List of Open Source Software which can be built on Fugaku

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Spack will be used to manage open source software packages on Fugaku. Fugaku users can easily use pre-installed packages and built packages based on Spack recipes. The following list shows the results of building/compiling packages for aarch64 according to the Spack recipes. Note that the results in this list do not guarantee that each package will work properly. On the other hand, Fujitsu will provide the following packages compiled with Fujitsu compiler on Fugaku as "external" packages, of which Spack can be aware.
  • OpenJDK 11
  • Ruby 2.6.5 or later
  • Python2 2.7.15
  • Python3 3.6.8
  • Numpy 1.14.3
  • SciPy 1.0.0
  • Eclipse IDE 2019-09 R Packages
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dialign-tx 1.0.2

Compiler Fujitsu Compiler 4.7.0
Result Dependency Error

Failed Reason

Failed to install dependency package :
------------------------------------------------
==> Installing dialign-tx-1.0.2-qcm23cmrt5uprn5ip7t46ewkf54nsr4q
==> No binary for dialign-tx-1.0.2-qcm23cmrt5uprn5ip7t46ewkf54nsr4q found: installing from source
==> Fetching https://mirror.spack.io/_source-cache/archive/fb/fb3940a48a12875332752a298f619f0da62593189cd257d28932463c7cebcb8f.tar.gz
==> No patches needed for dialign-tx
==> dialign-tx: Executing phase: 'edit'
==> dialign-tx: Executing phase: 'build'
==> Error: ProcessError: Command exited with status 2:
'make' '-j16'

10 errors found in build log:
80 1 warning generated.
81 rm -f ./museq
82 /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/lib/spack
/env/fj/fcc -o ./museq \
83 ./museq.o ./parameters.o ./io.o ./diag.o ./alig.o ./assemble.o ./pro
b.o ./orf.o ./translate.o \
84 -pipe -Wall -lm
85 ./diag.o: In function `find_all_diags':
>> 86 /vol0003/rccs-sdt/a01008/spack-stage/spack-stage-dialign-tx-1.0.2-qc
m23cmrt5uprn5ip7t46ewkf54nsr4q/spack-src/source/diag.c:1845: undefin
ed reference to `find_diags_dialign'
>> 87 /vol0003/rccs-sdt/a01008/spack-stage/spack-stage-dialign-tx-1.0.2-qc
m23cmrt5uprn5ip7t46ewkf54nsr4q/spack-src/source/diag.c:1913: undefin
ed reference to `calc_ov_weight'
88 ./diag.o: In function `old_find_all_diags':
>> 89 /vol0003/rccs-sdt/a01008/spack-stage/spack-stage-dialign-tx-1.0.2-qc
m23cmrt5uprn5ip7t46ewkf54nsr4q/spack-src/source/diag.c:1997: undefin
ed reference to `find_diags_dialign'
>> 90 /vol0003/rccs-sdt/a01008/spack-stage/spack-stage-dialign-tx-1.0.2-qc
m23cmrt5uprn5ip7t46ewkf54nsr4q/spack-src/source/diag.c:2100: undefin
ed reference to `calc_ov_weight'
91 ./assemble.o: In function `simple_aligner':
>> 92 /vol0003/rccs-sdt/a01008/spack-stage/spack-stage-dialign-tx-1.0.2-qc
m23cmrt5uprn5ip7t46ewkf54nsr4q/spack-src/source/assemble.c:476: unde
fined reference to `calc_weight'
>> 93 /vol0003/rccs-sdt/a01008/spack-stage/spack-stage-dialign-tx-1.0.2-qc
m23cmrt5uprn5ip7t46ewkf54nsr4q/spack-src/source/assemble.c:459: unde
fined reference to `calc_weight'
>> 94 /vol0003/rccs-sdt/a01008/spack-stage/spack-stage-dialign-tx-1.0.2-qc
m23cmrt5uprn5ip7t46ewkf54nsr4q/spack-src/source/assemble.c:532: unde
fined reference to `align_diag'
95 ./assemble.o: In function `guided_aligner_rec':
>> 96 /vol0003/rccs-sdt/a01008/spack-stage/spack-stage-dialign-tx-1.0.2-qc
m23cmrt5uprn5ip7t46ewkf54nsr4q/spack-src/source/assemble.c:1128: und
efined reference to `confl_diag'
>> 97 /vol0003/rccs-sdt/a01008/spack-stage/spack-stage-dialign-tx-1.0.2-qc
m23cmrt5uprn5ip7t46ewkf54nsr4q/spack-src/source/assemble.c:1128: und
efined reference to `confl_diag'
>> 98 clang-7: error: linker command failed with exit code 1 (use -v to se
e invocation)
99 make: *** [Makefile:36: museq] Error 1

See build log for details:
/home/rccs-sdt/a01008/spack-stage/spack-stage-dialign-tx-1.0.2-qcm23cmrt5uprn5ip7t46ewkf54nsr4q/spack-build-out.txt


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