List of Open Source Software which can be built on Fugaku

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Spack will be used to manage open source software packages on Fugaku. Fugaku users can easily use pre-installed packages and built packages based on Spack recipes. The following list shows the results of building/compiling packages for aarch64 according to the Spack recipes. Note that the results in this list do not guarantee that each package will work properly. On the other hand, Fujitsu will provide the following packages compiled with Fujitsu compiler on Fugaku as "external" packages, of which Spack can be aware.
  • OpenJDK 11
  • Ruby 2.6.5 or later
  • Python2 2.7.15
  • Python3 3.6.8
  • Numpy 1.14.3
  • SciPy 1.0.0
  • Eclipse IDE 2019-09 R Packages
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ea-utils 1.04.807

Compiler Fujitsu Compiler 4.7.0
Result Dependency Error

Failed Reason

Failed to install dependency package :
------------------------------------------------
[+] /usr (external ncurses-6.1-qbvus6vwvtyxe33hxq4hbpazkrpy6ctb)
[+] /usr (external zlib-1.2.11-o3hvygtdcp6vg3bpvsrurq4hgklwtype)
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/gnuconfig-2021-08-14-ezyvb3gy7i726n45kwb44a4vxle3if3i
[+] /usr (external perl-5.26.3-cfeod657avcbjzlstrxizeulrdfnqb3r)
[+] /usr (external libuuid-2.32.1-cho3cxgnsepebks5vpp5itx6oqs7he5i)
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/lz4-1.9.3-xodk2w4ws7op7b7arnt4mhbqf346xjkp
[+] /usr (external sqlite-3.26.0-jn2e3mz74r4jhks7qc2myuzgjrjyhsz3)
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/cmake-3.21.4-vgsk3aw6j4szlnkzjz3u57u7qtoosnkz
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/gsl-2.7-fm4fuduogrkyoqft5vpbzv7ylz5ejlrc
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/libiconv-1.16-53uyda5tbc4cft2ipchbsft56qsivt74
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/libmd-1.0.3-stbabcescctoosfu2nwuv5cekryi4p4g
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/apr-1.7.0-inzvuc37qjjazvqmvujwdydzktpo3mee
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/bamtools-2.5.1-e3khxbqz3c4po2qlo3hooehffiywlmfq
==> Installing utf8proc-2.4.0-idkaehtjrmzfaclqumwo6hk2z7sfdsnc
==> No binary for utf8proc-2.4.0-idkaehtjrmzfaclqumwo6hk2z7sfdsnc found: installing from source
==> Fetching https://mirror.spack.io/_source-cache/archive/b2/b2e5d547c1d94762a6d03a7e05cea46092aab68636460ff8648f1295e2cdfbd7.tar.gz
==> No patches needed for utf8proc
==> utf8proc: Executing phase: 'cmake'
==> utf8proc: Executing phase: 'build'
==> utf8proc: Executing phase: 'install'
==> utf8proc: Successfully installed utf8proc-2.4.0-idkaehtjrmzfaclqumwo6hk2z7sfdsnc
Fetch: 0.86s. Build: 10.61s. Total: 11.47s.
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/utf8proc-2.4.0-idkaehtjrmzfaclqumwo6hk2z7sfdsnc
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/libbsd-0.11.3-xiejcn74x7lxnfv2gl3k2zsohzdun57v
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/expat-2.4.1-6d5wgt5slcremuk5p6srspiodqufzm3h
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/apr-util-1.6.1-mmih7yenwkbmfbbtpq3mqolkwpgneupk
==> Installing subversion-1.14.0-koy3teuz5r6ojd5mzx2fknd3ddxfux22
==> No binary for subversion-1.14.0-koy3teuz5r6ojd5mzx2fknd3ddxfux22 found: installing from source
==> Fetching https://mirror.spack.io/_source-cache/archive/ef/ef3d1147535e41874c304fb5b9ea32745fbf5d7faecf2ce21d4115b567e937d0.tar.gz
==> No patches needed for subversion
==> subversion: Executing phase: 'autoreconf'
==> subversion: Executing phase: 'configure'
==> subversion: Executing phase: 'build'
==> subversion: Executing phase: 'install'
==> subversion: Successfully installed subversion-1.14.0-koy3teuz5r6ojd5mzx2fknd3ddxfux22
Fetch: 1.65s. Build: 41m 28.64s. Total: 41m 30.29s.
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/subversion-1.14.0-koy3teuz5r6ojd5mzx2fknd3ddxfux22
==> Installing ea-utils-1.04.807-eu2z6nrvxeezm4qw5fnymwwgb4v4l3t4
==> No binary for ea-utils-1.04.807-eu2z6nrvxeezm4qw5fnymwwgb4v4l3t4 found: installing from source
==> Fetching https://mirror.spack.io/_source-cache/archive/aa/aa09d25e6aa7ae71d2ce4198a98e58d563f151f8ff248e4602fa437f12b8d05f.tar.gz
==> No patches needed for ea-utils
==> ea-utils: Executing phase: 'edit'
==> ea-utils: Executing phase: 'build'
==> Error: ProcessError: Command exited with status 2:
'make' '-j16'

1 error found in build log:
323 case 'D': ++trackdup; break;
324 ^~~~~~~~
325 sam-stats.cpp: In member function 'int ibucket::operator[](int) con
st':
326 sam-stats.cpp:139:2: warning: control reaches end of non-void funct
ion [-Wreturn-type]
327 }
328 ^
>> 329 varcall.cpp:33:10: fatal error: gsl/gsl_randist.h: No such file or
directory
330 #include <gsl/gsl_randist.h>
331 ^~~~~~~~~~~~~~~~~~~
332 compilation terminated.
333 make: *** [Makefile:94: varcall] Error 1
334 make: *** Waiting for unfinished jobs....
335 fastq-stats.cpp: In function 'int main(int, char**)':

See build log for details:
/home/rccs-sdt/a01008/spack-stage/spack-stage-ea-utils-1.04.807-eu2z6nrvxeezm4qw5fnymwwgb4v4l3t4/spack-build-out.txt


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