List of Open Source Software which can be built on Fugaku

Spack logo
Spack will be used to manage open source software packages on Fugaku. Fugaku users can easily use pre-installed packages and built packages based on Spack recipes. The following list shows the results of building/compiling packages for aarch64 according to the Spack recipes. Note that the results in this list do not guarantee that each package will work properly. On the other hand, Fujitsu will provide the following packages compiled with Fujitsu compiler on Fugaku as "external" packages, of which Spack can be aware.
  • OpenJDK 11
  • Ruby 2.6.5 or later
  • Python2 2.7.15
  • Python3 3.6.8
  • Numpy 1.14.3
  • SciPy 1.0.0
  • Eclipse IDE 2019-09 R Packages
Please contact us from email:

exabayes 1.5.1

Compiler Fujitsu Compiler 4.7.0
Result Dependency Error

Failed Reason

Failed to install dependency package :
------------------------------------------------
[+] /opt/FJSVxtclanga/tcsds-latest (external fujitsu-mpi-head-zlunfezjmwzq5pfrxkeb3tpfc6ja5cxz)
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/gnuconfig-2021-08-14-ezyvb3gy7i726n45kwb44a4vxle3if3i
==> Installing exabayes-1.5.1-s4b6rvmcq6zncdks6bhkdvs66l2gpdig
==> No binary for exabayes-1.5.1-s4b6rvmcq6zncdks6bhkdvs66l2gpdig found: installing from source
==> Fetching https://mirror.spack.io/_source-cache/archive/f7/f75ce8d5cee4d241cadacd0f5f5612d783b9e9babff2a99c7e0c3819a94bbca9.tar.gz
==> No patches needed for exabayes
==> exabayes: Executing phase: 'autoreconf'
==> exabayes: Executing phase: 'configure'
==> exabayes: Executing phase: 'build'
==> Error: ProcessError: Command exited with status 2:
'make' '-j16' 'V=1'

2 errors found in build log:
103 config.status: creating src/config.h
104 config.status: executing depfiles commands
105 ==> exabayes: Executing phase: 'build'
106 ==> [2022-03-01-16:21:46.684046] 'make' '-j16' 'V=1'
107 /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/lib/spac
k/env/fj/fcc -DHAVE_CONFIG_H -I. -I/home/rccs-sdt/a01008/spack-stag
e/spack-stage-exabayes-1.5.1-s4b6rvmcq6zncdks6bhkdvs66l2gpdig/spack
-src -I./src -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -
D__STRICT_ANSI__ -Wall -Wextra -pedantic -Wcast-qual -Wcomment -Wc
onversion -Wdisabled-optimization -Wfloat-equal -Wformat -Wformat=2
-Wformat-security -Winit-self -Winline -Winvalid-pch -Wmissing-bra
ces -Wmissing-include-dirs -Wparentheses -Wpointer-arith -Wreturn-t
ype -Wsequence-point -Wshadow -Wsign-compare -Wstrict-aliasing -Wst
rict-aliasing=2 -Wswitch -Wtrigraphs -Wuninitialized -Wunknown-prag
mas -Wwrite-strings -Wunused -Wunused-function -Wunused-variable -W
return-type -Wmissing-declarations -Wundef -Wno-unused-parameter -W
no-sign-conversion -Wno-unknown-pragmas -Wno-inline -Wcast-align -W
char-subscripts -Wformat-nonliteral -Wformat-y2k -Wimport -Wmissin
g-field-initializers -Wmissing-format-attribute -Wpacked -Wredunda
nt-decls -Wstack-protector -Wswitch-default -Wswitch-enum -Wunreach
able-code -Wvariadic-macros -Wvolatile-register-var -Wunused-label
-Wunused-value -Wint-to-pointer-cast -Wno-suggest-attribute=noretur
n -Wno-unknown-warning-option -Wno-unknown-warning -Wno-missing-nor
eturn -std=c99 -march=native -mtune=native -w -O2 -I/home/rccs-sd
t/a01008/spack-stage/spack-stage-exabayes-1.5.1-s4b6rvmcq6zncdks6bh
kdvs66l2gpdig/spack-src/src -I/home/rccs-sdt/a01008/spack-stage/spa
ck-stage-exabayes-1.5.1-s4b6rvmcq6zncdks6bhkdvs66l2gpdig/spack-src/
src/contrib -I/home/rccs-sdt/a01008/spack-stage/spack-stage-exabaye
s-1.5.1-s4b6rvmcq6zncdks6bhkdvs66l2gpdig/spack-src/src/system -I/ho
me/rccs-sdt/a01008/spack-stage/spack-stage-exabayes-1.5.1-s4b6rvmcq
6zncdks6bhkdvs66l2gpdig/spack-src/src/proposals -I/home/rccs-sdt/a0
1008/spack-stage/spack-stage-exabayes-1.5.1-s4b6rvmcq6zncdks6bhkdvs
66l2gpdig/spack-src/src/proposals/param-proposers -I/home/rccs-sdt/
a01008/spack-stage/spack-stage-exabayes-1.5.1-s4b6rvmcq6zncdks6bhkd
vs66l2gpdig/spack-src/src/proposals/topo-proposers -I/home/rccs-sdt
/a01008/spack-stage/spack-stage-exabayes-1.5.1-s4b6rvmcq6zncdks6bhk
dvs66l2gpdig/spack-src/src/config -I/home/rccs-sdt/a01008/spack-sta
ge/spack-stage-exabayes-1.5.1-s4b6rvmcq6zncdks6bhkdvs66l2gpdig/spac
k-src/src/file -I/home/rccs-sdt/a01008/spack-stage/spack-stage-exab
ayes-1.5.1-s4b6rvmcq6zncdks6bhkdvs66l2gpdig/spack-src/src/mcmc -I/h
ome/rccs-sdt/a01008/spack-stage/spack-stage-exabayes-1.5.1-s4b6rvmc
q6zncdks6bhkdvs66l2gpdig/spack-src/src/eval -I/home/rccs-sdt/a01008
/spack-stage/spack-stage-exabayes-1.5.1-s4b6rvmcq6zncdks6bhkdvs66l2
gpdig/spack-src/src/data-struct -I/home/rccs-sdt/a01008/spack-stage
/spack-stage-exabayes-1.5.1-s4b6rvmcq6zncdks6bhkdvs66l2gpdig/spack-
src/src/priors -I/home/rccs-sdt/a01008/spack-stage/spack-stage-exab
ayes-1.5.1-s4b6rvmcq6zncdks6bhkdvs66l2gpdig/spack-src/src/tree-pars
e -I/home/rccs-sdt/a01008/spack-stage/spack-stage-exabayes-1.5.1-s4
b6rvmcq6zncdks6bhkdvs66l2gpdig/spack-src/src/model -I/home/rccs-sdt
/a01008/spack-stage/spack-stage-exabayes-1.5.1-s4b6rvmcq6zncdks6bhk
dvs66l2gpdig/spack-src/src/math -I/home/rccs-sdt/a01008/spack-stage
/spack-stage-exabayes-1.5.1-s4b6rvmcq6zncdks6bhkdvs66l2gpdig/spack-
src/src/parameters -I/home/rccs-sdt/a01008/spack-stage/spack-stage-
exabayes-1.5.1-s4b6rvmcq6zncdks6bhkdvs66l2gpdig/spack-src/src/branc
hes -I/home/rccs-sdt/a01008/spack-stage/spack-stage-exabayes-1.5.1
-s4b6rvmcq6zncdks6bhkdvs66l2gpdig/spack-src/src/comm/ -I/home/rccs-
sdt/a01008/spack-stage/spack-stage-exabayes-1.5.1-s4b6rvmcq6zncdks6
bhkdvs66l2gpdig/spack-src/src/comm/threads -MT ./src/libpll_a-a
vxConditional.o -MD -MP -MF ./src/.deps/libpll_a-avxConditional.Tpo
-c -o ./src/libpll_a-avxConditional.o `test -f './src/avxCondition
al.c' || echo '/home/rccs-sdt/a01008/spack-stage/spack-stage-exabay
es-1.5.1-s4b6rvmcq6zncdks6bhkdvs66l2gpdig/spack-src/'`./src/avxCond
itional.c
108 /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/lib/spac
k/env/fj/fcc -DHAVE_CONFIG_H -I. -I/home/rccs-sdt/a01008/spack-stag
e/spack-stage-exabayes-1.5.1-s4b6rvmcq6zncdks6bhkdvs66l2gpdig/spack
-src -I./src -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -
D__STRICT_ANSI__ -Wall -Wextra -pedantic -Wcast-qual -Wcomment -Wc
onversion -Wdisabled-optimization -Wfloat-equal -Wformat -Wformat=2
-Wformat-security -Winit-self -Winline -Winvalid-pch -Wmissing-bra
ces -Wmissing-include-dirs -Wparentheses -Wpointer-arith -Wreturn-t
ype -Wsequence-point -Wshadow -Wsign-compare -Wstrict-aliasing -Wst
rict-aliasing=2 -Wswitch -Wtrigraphs -Wuninitialized -Wunknown-prag
mas -Wwrite-strings -Wunused -Wunused-function -Wunused-variable -W
return-type -Wmissing-declarations -Wundef -Wno-unused-parameter -W
no-sign-conversion -Wno-unknown-pragmas -Wno-inline -Wcast-align -W
char-subscripts -Wformat-nonliteral -Wformat-y2k -Wimport -Wmissin
g-field-initializers -Wmissing-format-attribute -Wpacked -Wredunda
nt-decls -Wstack-protector -Wswitch-default -Wswitch-enum -Wunreach
able-code -Wvariadic-macros -Wvolatile-register-var -Wunused-label
-Wunused-value -Wint-to-pointer-cast -Wno-suggest-attribute=noretur
n -Wno-unknown-warning-option -Wno-unknown-warning -Wno-missing-nor
eturn -std=c99 -march=native -mtune=native -w -I/home/rccs-sdt/a0
1008/spack-stage/spack-stage-exabayes-1.5.1-s4b6rvmcq6zncdks6bhkdvs
66l2gpdig/spack-src/src -I/home/rccs-sdt/a01008/spack-stage/spack-s
tage-exabayes-1.5.1-s4b6rvmcq6zncdks6bhkdvs66l2gpdig/spack-src/src/
contrib -I/home/rccs-sdt/a01008/spack-stage/spack-stage-exabayes-1.
5.1-s4b6rvmcq6zncdks6bhkdvs66l2gpdig/spack-src/src/system -I/home/r
ccs-sdt/a01008/spack-stage/spack-stage-exabayes-1.5.1-s4b6rvmcq6znc
dks6bhkdvs66l2gpdig/spack-src/src/proposals -I/home/rccs-sdt/a01008
/spack-stage/spack-stage-exabayes-1.5.1-s4b6rvmcq6zncdks6bhkdvs66l2
gpdig/spack-src/src/proposals/param-proposers -I/home/rccs-sdt/a010
08/spack-stage/spack-stage-exabayes-1.5.1-s4b6rvmcq6zncdks6bhkdvs66
l2gpdig/spack-src/src/proposals/topo-proposers -I/home/rccs-sdt/a01
008/spack-stage/spack-stage-exabayes-1.5.1-s4b6rvmcq6zncdks6bhkdvs6
6l2gpdig/spack-src/src/config -I/home/rccs-sdt/a01008/spack-stage/s
pack-stage-exabayes-1.5.1-s4b6rvmcq6zncdks6bhkdvs66l2gpdig/spack-sr
c/src/file -I/home/rccs-sdt/a01008/spack-stage/spack-stage-exabayes
-1.5.1-s4b6rvmcq6zncdks6bhkdvs66l2gpdig/spack-src/src/mcmc -I/home/
rccs-sdt/a01008/spack-stage/spack-stage-exabayes-1.5.1-s4b6rvmcq6zn
cdks6bhkdvs66l2gpdig/spack-src/src/eval -I/home/rccs-sdt/a01008/spa
ck-stage/spack-stage-exabayes-1.5.1-s4b6rvmcq6zncdks6bhkdvs66l2gpdi
g/spack-src/src/data-struct -I/home/rccs-sdt/a01008/spack-stage/spa
ck-stage-exabayes-1.5.1-s4b6rvmcq6zncdks6bhkdvs66l2gpdig/spack-src/
src/priors -I/home/rccs-sdt/a01008/spack-stage/spack-stage-exabayes
-1.5.1-s4b6rvmcq6zncdks6bhkdvs66l2gpdig/spack-src/src/tree-parse -I
/home/rccs-sdt/a01008/spack-stage/spack-stage-exabayes-1.5.1-s4b6rv
mcq6zncdks6bhkdvs66l2gpdig/spack-src/src/model -I/home/rccs-sdt/a01
008/spack-stage/spack-stage-exabayes-1.5.1-s4b6rvmcq6zncdks6bhkdvs6
6l2gpdig/spack-src/src/math -I/home/rccs-sdt/a01008/spack-stage/spa
ck-stage-exabayes-1.5.1-s4b6rvmcq6zncdks6bhkdvs66l2gpdig/spack-src/
src/parameters -I/home/rccs-sdt/a01008/spack-stage/spack-stage-exab
ayes-1.5.1-s4b6rvmcq6zncdks6bhkdvs66l2gpdig/spack-src/src/branches
-I/home/rccs-sdt/a01008/spack-stage/spack-stage-exabayes-1.5.1-s4b
6rvmcq6zncdks6bhkdvs66l2gpdig/spack-src/src/comm/ -I/home/rccs-sdt/
a01008/spack-stage/spack-stage-exabayes-1.5.1-s4b6rvmcq6zncdks6bhkd
vs66l2gpdig/spack-src/src/comm/threads -O1 -MT ./lib/pll/libpll_m
odel_a-models.o -MD -MP -MF ./lib/pll/.deps/libpll_model_a-models.T
po -c -o ./lib/pll/libpll_model_a-models.o `test -f './lib/pll/mode
ls.c' || echo '/home/rccs-sdt/a01008/spack-stage/spack-stage-exabay
es-1.5.1-s4b6rvmcq6zncdks6bhkdvs66l2gpdig/spack-src/'`./lib/pll/mod
els.c
>> 109 clang-7: error: the clang compiler does not support '-march=native'
>> 110 clang-7: error: the clang compiler does not support '-march=native'
111 make: *** [Makefile:2784: src/libpll_a-avxConditional.o] Error 1
112 make: *** Waiting for unfinished jobs....
113 make: *** [Makefile:2826: lib/pll/libpll_model_a-models.o] Error 1

See build log for details:
/home/rccs-sdt/a01008/spack-stage/spack-stage-exabayes-1.5.1-s4b6rvmcq6zncdks6bhkdvs66l2gpdig/spack-build-out.txt


<= Back to list