List of Open Source Software which can be built on Fugaku

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Spack will be used to manage open source software packages on Fugaku. Fugaku users can easily use pre-installed packages and built packages based on Spack recipes. The following list shows the results of building/compiling packages for aarch64 according to the Spack recipes. Note that the results in this list do not guarantee that each package will work properly. On the other hand, Fujitsu will provide the following packages compiled with Fujitsu compiler on Fugaku as "external" packages, of which Spack can be aware.
  • OpenJDK 11
  • Ruby 2.6.5 or later
  • Python2 2.7.15
  • Python3 3.6.8
  • Numpy 1.14.3
  • SciPy 1.0.0
  • Eclipse IDE 2019-09 R Packages
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fastq-screen 0.11.2

Compiler Fujitsu Compiler 4.7.0
Result Dependency Error

Failed Reason

Failed to install dependency package :
------------------------------------------------
>> 193 ../test/x86/../../simde/x86/avx512f.h:3470:23: error: address of ve
ctor element requested
194 svst1_s32(pg, &(r_.i32[i]), svadd_s32_x(pg, va, vb));
195 ^ ~~~~~~~~~
196 /opt/FJSVxtclanga/tcsds-1.2.34/clang-comp/lib64/clang/7.1.0/include
/arm_sve.h:20260:44: note: expanded from macro 'svst1_s32'
197 __attribute__((unused)) int32_t * __s1 = __p1; \
198 ^~~~
199 In file included from test/x86/avx512f.cpp:26:
200 In file included from ../test/x86/test-avx512.h:6:
>> 201 ../test/x86/../../simde/x86/avx512f.h:3470:23: error: address of ve
ctor element requested
202 svst1_s32(pg, &(r_.i32[i]), svadd_s32_x(pg, va, vb));
203 ^ ~~~~~~~~~
204 /opt/FJSVxtclanga/tcsds-1.2.34/clang-comp/lib64/clang/7.1.0/include
/arm_sve.h:20262:33: note: expanded from macro 'svst1_s32'
205 __builtin_sve_svst1_s32(__s0, __p1, __s2); \
206 ^~~~
207 6 errors generated.
208 [72/876] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack
/lib/spack/env/fj/fcc -Itest/x86/avx512bw-native-c.p -Itest/x86 -I.
./test/x86 -I. -I.. -fcolor-diagnostics -D_FILE_OFFSET_BITS=64 -Wal
l -Winvalid-pch -std=c99 -O2 -g -fopenmp-simd -DSIMDE_ENABLE_OPENMP
-DSIMDE_TEST_BARE -MD -MQ test/x86/avx512bw-native-c.p/avx512bw.c.
o -MF test/x86/avx512bw-native-c.p/avx512bw.c.o.d -o test/x86/avx51
2bw-native-c.p/avx512bw.c.o -c ../test/x86/avx512bw.c
>> 209 FAILED: test/x86/avx512bw-native-c.p/avx512bw.c.o
210 /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/lib/spac
k/env/fj/fcc -Itest/x86/avx512bw-native-c.p -Itest/x86 -I../test/x8
6 -I. -I.. -fcolor-diagnostics -D_FILE_OFFSET_BITS=64 -Wall -Winval
id-pch -std=c99 -O2 -g -fopenmp-simd -DSIMDE_ENABLE_OPENMP -DSIMDE_
TEST_BARE -MD -MQ test/x86/avx512bw-native-c.p/avx512bw.c.o -MF tes
t/x86/avx512bw-native-c.p/avx512bw.c.o.d -o test/x86/avx512bw-nativ
e-c.p/avx512bw.c.o -c ../test/x86/avx512bw.c
211 In file included from ../test/x86/avx512bw.c:25:
212 In file included from ../simde/x86/avx512bw.h:33:
213 In file included from ../simde/x86/avx512vl.h:32:
>> 214 ../simde/x86/avx512f.h:3468:30: error: address of vector element re
quested
215 va = svld1_s32(pg, &(a_.i32[i])),
216 ^ ~~~~~~~~~
217 /opt/FJSVxtclanga/tcsds-1.2.34/clang-comp/lib64/clang/7.1.0/include
/arm_sve.h:8086:50: note: expanded from macro 'svld1_s32'
218 __attribute__((unused)) int32_t const * __s1 = __p1; \
219 ^~~~
220 In file included from ../test/x86/avx512bw.c:25:
221 In file included from ../simde/x86/avx512bw.h:33:
222 In file included from ../simde/x86/avx512vl.h:32:
>> 223 ../simde/x86/avx512f.h:3468:30: error: address of vector element re
quested
224 va = svld1_s32(pg, &(a_.i32[i])),
225 ^ ~~~~~~~~~
226 /opt/FJSVxtclanga/tcsds-1.2.34/clang-comp/lib64/clang/7.1.0/include
/arm_sve.h:8088:41: note: expanded from macro 'svld1_s32'
227 __ret = __builtin_sve_svld1_s32(__s0, __p1); \
228 ^~~~
229 In file included from ../test/x86/avx512bw.c:25:
230 In file included from ../simde/x86/avx512bw.h:33:
231 In file included from ../simde/x86/avx512vl.h:32:
>> 232 ../simde/x86/avx512f.h:3469:30: error: address of vector element re
quested
233 vb = svld1_s32(pg, &(b_.i32[i]));
234 ^ ~~~~~~~~~
235 /opt/FJSVxtclanga/tcsds-1.2.34/clang-comp/lib64/clang/7.1.0/include
/arm_sve.h:8086:50: note: expanded from macro 'svld1_s32'
236 __attribute__((unused)) int32_t const * __s1 = __p1; \
237 ^~~~
238 In file included from ../test/x86/avx512bw.c:25:
239 In file included from ../simde/x86/avx512bw.h:33:
240 In file included from ../simde/x86/avx512vl.h:32:
>> 241 ../simde/x86/avx512f.h:3469:30: error: address of vector element re
quested
242 vb = svld1_s32(pg, &(b_.i32[i]));
243 ^ ~~~~~~~~~
244 /opt/FJSVxtclanga/tcsds-1.2.34/clang-comp/lib64/clang/7.1.0/include
/arm_sve.h:8088:41: note: expanded from macro 'svld1_s32'
245 __ret = __builtin_sve_svld1_s32(__s0, __p1); \
246 ^~~~
247 In file included from ../test/x86/avx512bw.c:25:
248 In file included from ../simde/x86/avx512bw.h:33:
249 In file included from ../simde/x86/avx512vl.h:32:
>> 250 ../simde/x86/avx512f.h:3470:23: error: address of vector element re
quested
251 svst1_s32(pg, &(r_.i32[i]), svadd_s32_x(pg, va, vb));
252 ^ ~~~~~~~~~
253 /opt/FJSVxtclanga/tcsds-1.2.34/clang-comp/lib64/clang/7.1.0/include
/arm_sve.h:20260:44: note: expanded from macro 'svst1_s32'
254 __attribute__((unused)) int32_t * __s1 = __p1; \
255 ^~~~
256 In file included from ../test/x86/avx512bw.c:25:
257 In file included from ../simde/x86/avx512bw.h:33:
258 In file included from ../simde/x86/avx512vl.h:32:
>> 259 ../simde/x86/avx512f.h:3470:23: error: address of vector element re
quested
260 svst1_s32(pg, &(r_.i32[i]), svadd_s32_x(pg, va, vb));
261 ^ ~~~~~~~~~
262 /opt/FJSVxtclanga/tcsds-1.2.34/clang-comp/lib64/clang/7.1.0/include
/arm_sve.h:20262:33: note: expanded from macro 'svst1_s32'
263 __builtin_sve_svst1_s32(__s0, __p1, __s2); \
264 ^~~~
265 6 errors generated.

See build log for details:
/home/rccs-sdt/a01008/spack-stage/spack-stage-simde-0.6.0-zhwpa3bf7vgzv7ytpkfpby3xkkqkqz7f/spack-build-out.txt

==> Installing perl-gd-2.53-4imqncrpfmgf64vnl3g7ynd7dwfxfqni
==> No binary for perl-gd-2.53-4imqncrpfmgf64vnl3g7ynd7dwfxfqni found: installing from source
==> Using cached archive: /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/var/spack/cache/_source-cache/archive/d0/d05d01fe95e581adb3468cf05ab5d405db7497c0fb3ec7ecf23d023705fab7aa.tar.gz
==> No patches needed for perl-gd
==> perl-gd: Executing phase: 'configure'
==> perl-gd: Executing phase: 'build'
==> Error: ProcessError: Command exited with status 2:
'make' '-j16'

1 error found in build log:
29 cp qd.pl blib/lib/qd.pl
30 cp GD/Polygon.pm blib/lib/GD/Polygon.pm
31 "/usr/bin/perl" "-Iblib/arch" "-Iblib/lib" bdf_scripts/bdf2gdfont.PL
S bdf_scripts/bdf2gdfont.pl
32 Extracting bdf2gdfont.pl (with variable substitutions)
33 mv GD.xsc GD.c
34 gcc -c -I/vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack
/opt/spack/linux-rhel8-a64fx/fj-4.7.0/libgd-2.2.4-r23bxzc3v57fsk32xe
px5yyo7o6miwgf/include -D_REENTRANT -D_GNU_SOURCE -O2 -g -pipe -Wall
-Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSE
RTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -
specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/re
dhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-p
rotection -fwrapv -fno-strict-aliasing -I/usr/local/include -D_LARGE
FILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wformat=0 -g -DVERSION=\"2.53\
" -DXS_VERSION=\"2.53\" -fPIC "-I/usr/lib64/perl5/CORE" -DHAVE_JPEG
-DHAVE_FT -DHAVE_GIF -DHAVE_PNG -DHAVE_FONTCONFIG GD.c
>> 35 cc1: error: -Wformat-security ignored without -Wformat [-Werror=form
at-security]
36 GD.xs: In function 'constant':
37 GD.xs:337:1: warning: label 'not_there' defined but not used [-Wunus
ed-label]
38 not_there:
39 ^~~~~~~~~
40 GD.c: In function 'XS_GD__Image_trueColor':
41 GD.c:716:9: warning: variable 'packname' set but not used [-Wunused-
but-set-variable]

See build log for details:
/home/rccs-sdt/a01008/spack-stage/spack-stage-perl-gd-2.53-4imqncrpfmgf64vnl3g7ynd7dwfxfqni/spack-build-out.txt

==> Warning: Skipping build of perl-gdtextutil-0.86-7ezgyagksqosnjazvwk4btz32dfism3j since perl-gd-2.53-4imqncrpfmgf64vnl3g7ynd7dwfxfqni failed
==> Warning: Skipping build of perl-gdgraph-1.4308-qm52d7wuqatrp6gqlm6muo547ch4gh4v since perl-gdtextutil-0.86-7ezgyagksqosnjazvwk4btz32dfism3j failed
==> Error: fastq-screen-0.11.2-5dgznp7hocmpmsbbx2ifmmqmrthzny6s: Package was not installed
==> Error: Installation request failed. Refer to reported errors for failing package(s).


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