List of Open Source Software which can be built on Fugaku

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Spack will be used to manage open source software packages on Fugaku. Fugaku users can easily use pre-installed packages and built packages based on Spack recipes. The following list shows the results of building/compiling packages for aarch64 according to the Spack recipes. Note that the results in this list do not guarantee that each package will work properly. On the other hand, Fujitsu will provide the following packages compiled with Fujitsu compiler on Fugaku as "external" packages, of which Spack can be aware.
  • OpenJDK 11
  • Ruby 2.6.5 or later
  • Python2 2.7.15
  • Python3 3.6.8
  • Numpy 1.14.3
  • SciPy 1.0.0
  • Eclipse IDE 2019-09 R Packages
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gmime 2.6.23

Compiler Fujitsu Compiler 4.7.0
Result Dependency Error

Failed Reason

Failed to install dependency package :
------------------------------------------------
[+] /usr (external gmp-6.1.2-aweb6qdw6k72z5szxngketpntkdvprym)
[+] /usr (external autoconf-2.69-me3qacnq6as2fvkhuiia2ks5udajax3b)
[+] /usr (external automake-1.16.1-gbketv7wv244mk5mkf65hyjxew4yocxo)
[+] /usr (external libtool-2.4.6-snb3wjzerg4q7w57akrhqlg2hfvalawy)
[+] /usr (external m4-1.4.18-zz6lq3qkexluljpiw5yxqyozzhkijvpn)
[+] /usr (external readline-7.0-776innbqk3ca64hss3u4zvuh46f5xe4y)
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/libiconv-1.16-53uyda5tbc4cft2ipchbsft56qsivt74
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/autoconf-archive-2019.01.06-5xupizjwrucyxednhyet5tkdx7jnlc4n
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/libsigsegv-2.13-k2r2mblre6vfu6wntucdd77fue353zhd
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/ninja-1.10.2-xqnjrwwmhbcvrxnzad4eoj6ty5bftx6l
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/py-setuptools-58.2.0-nwtt7d5cczfaezzecmrcr4swo63tvrg2
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/texinfo-6.5-dqgnoe2tyqkmtth6epsjkfp5uwgwvtwz
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/meson-0.60.0-ndoo3khnwedtaakey3qtuh2r6fqq5v6k
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/mpfr-4.1.0-lgxxsheprifg75vh4dowz2xxfiy23x4s
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/glib-2.70.0-rwhiqulrjvqznxg7eacgg4yob6viseed
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/gawk-5.1.0-y6txy7in44yyc4bmyentskfsjj7j6gx7
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/libgpg-error-1.42-d34e3izszq54ckuxrpfphftlpxe3bivq
==> Installing gmime-2.6.23-fkvsbtot3efjeefh2goxcrtdjh432czm
==> No binary for gmime-2.6.23-fkvsbtot3efjeefh2goxcrtdjh432czm found: installing from source
==> Fetching https://mirror.spack.io/_source-cache/archive/71/7149686a71ca42a1390869b6074815106b061aaeaaa8f2ef8c12c191d9a79f6a.tar.xz
==> No patches needed for gmime
==> gmime: Executing phase: 'autoreconf'
==> gmime: Executing phase: 'configure'
==> gmime: Executing phase: 'build'
==> Error: ProcessError: Command exited with status 2:
'make' '-j16' 'V=1'

7 errors found in build log:
88 checking for dlfcn.h... yes
89 checking for objdir... .libs
90 checking if /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/s
pack/lib/spack/env/fj/fcc supports -fno-rtti -fno-exceptions... ye
s
91 checking for /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/
spack/lib/spack/env/fj/fcc option to produce PIC... -fPIC -DPIC
92 checking if /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/s
pack/lib/spack/env/fj/fcc PIC flag -fPIC -DPIC works... yes
93 checking if /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/s
pack/lib/spack/env/fj/fcc static flag -static works... no
>> 94 checking if /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/s
pack/lib/spack/env/fj/fcc supports -c -o file.o... /usr/bin/rm: ca
nnot remove 'conftest*': No such file or directory
95 yes
96 checking if /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/s
pack/lib/spack/env/fj/fcc supports -c -o file.o... (cached) yes
97 checking whether the /vol0003/rccs-sdt/a01008/spack-all-test/env-2
0220225/spack/lib/spack/env/fj/fcc linker (/usr/bin/ld) supports s
hared libraries... yes
>> 98 checking whether -lc should be explicitly linked in... /usr/bin/rm
: cannot remove 'conftest*': No such file or directory
99 no
100 checking dynamic linker characteristics... GNU/Linux ld.so
101 checking how to hardcode library paths into programs... immediate
102 checking whether stripping libraries is possible... yes
103 checking if libtool supports shared libraries... yes
104 checking whether to build shared libraries... yes
105 checking whether to build static libraries... yes
106 configure: creating ./config.lt
107 config.lt: creating libtool
>> 108 /usr/bin/rm: cannot remove 'libtoolT': No such file or directory
109 checking for bash... /usr/bin/bash
110 checking if dolt supports this host... no, falling back to libtool
111 checking sys/mman.h usability... yes
112 checking sys/mman.h presence... yes
113 checking for sys/mman.h... yes
114 checking sys/param.h usability... yes

...

228 config.status: creating tools/Makefile
229 config.status: creating gmime.spec
230 config.status: creating gmime.pc
231 config.status: creating config.h
232 config.status: executing depfiles commands
233 config.status: executing libtool commands
>> 234 /usr/bin/rm: cannot remove 'libtoolT': No such file or directory
235
236
237 Configuration:
238
239 Source code location: /home/rccs-sdt/a01008/spack-stage/spack-st
age-gmime-2.6.23-fkvsbtot3efjeefh2goxcrtdjh432czm/spack-src
240 Install prefix: /vol0003/rccs-sdt/a01008/spack-all-test/en
v-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/gmime-2.6.23
-fkvsbtot3efjeefh2goxcrtdjh432czm

...

1608 /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spa
ck/linux-rhel8-a64fx/fj-4.7.0/glib-2.70.0-rwhiqulrjvqznxg7eacgg4yo
b6viseed/include/glib-2.0/glib/gmacros.h:1112:44: note: expanded f
rom macro 'G_DEPRECATED_FOR'
1609 #define G_DEPRECATED_FOR(f) __attribute__((__deprecated__("Use '"
#f "' instead")))
1610 ^
1611 6 warnings generated.
1612 libtool: compile: /vol0003/rccs-sdt/a01008/spack-all-test/env-202
20225/spack/lib/spack/env/fj/fcc -DHAVE_CONFIG_H -I. -I/home/rccs-
sdt/a01008/spack-stage/spack-stage-gmime-2.6.23-fkvsbtot3efjeefh2g
oxcrtdjh432czm/spack-src/gmime -I.. -I/home/rccs-sdt/a01008/spack-
stage/spack-stage-gmime-2.6.23-fkvsbtot3efjeefh2goxcrtdjh432czm/sp
ack-src -I.. -I/home/rccs-sdt/a01008/spack-stage/spack-stage-gmime
-2.6.23-fkvsbtot3efjeefh2goxcrtdjh432czm/spack-src/util -I../util
-DG_LOG_DOMAIN=\"gmime\" -D_LARGEFILE64_SOURCE -I/vol0003/rccs-sdt
/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a6
4fx/fj-4.7.0/glib-2.70.0-rwhiqulrjvqznxg7eacgg4yob6viseed/include/
glib-2.0 -I/vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/sp
ack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/glib-2.70.0-rwhiqulrjvqzn
xg7eacgg4yob6viseed/lib/glib-2.0/include -I/vol0003/rccs-sdt/a0100
8/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj
-4.7.0/glib-2.70.0-rwhiqulrjvqznxg7eacgg4yob6viseed/include -pthre
ad -g -O2 -fno-strict-aliasing -MT internet-address.lo -MD -MP -MF
.deps/internet-address.Tpo -c internet-address.c -o internet-addr
ess.o >/dev/null 2>&1
1613 libtool: compile: /vol0003/rccs-sdt/a01008/spack-all-test/env-202
20225/spack/lib/spack/env/fj/fcc -DHAVE_CONFIG_H -I. -I/home/rccs-
sdt/a01008/spack-stage/spack-stage-gmime-2.6.23-fkvsbtot3efjeefh2g
oxcrtdjh432czm/spack-src/gmime -I.. -I/home/rccs-sdt/a01008/spack-
stage/spack-stage-gmime-2.6.23-fkvsbtot3efjeefh2goxcrtdjh432czm/sp
ack-src -I.. -I/home/rccs-sdt/a01008/spack-stage/spack-stage-gmime
-2.6.23-fkvsbtot3efjeefh2goxcrtdjh432czm/spack-src/util -I../util
-DG_LOG_DOMAIN=\"gmime\" -D_LARGEFILE64_SOURCE -I/vol0003/rccs-sdt
/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a6
4fx/fj-4.7.0/glib-2.70.0-rwhiqulrjvqznxg7eacgg4yob6viseed/include/
glib-2.0 -I/vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/sp
ack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/glib-2.70.0-rwhiqulrjvqzn
xg7eacgg4yob6viseed/lib/glib-2.0/include -I/vol0003/rccs-sdt/a0100
8/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj
-4.7.0/glib-2.70.0-rwhiqulrjvqznxg7eacgg4yob6viseed/include -pthre
ad -g -O2 -fno-strict-aliasing -MT gmime-utils.lo -MD -MP -MF .dep
s/gmime-utils.Tpo -c gmime-utils.c -o gmime-utils.o >/dev/null 2>&
1
>> 1614 /usr/bin/ld: charset-map.o: undefined reference to symbol 'libicon
v_open'
>> 1615 //vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/sp
ack/linux-rhel8-a64fx/fj-4.7.0/libiconv-1.16-53uyda5tbc4cft2ipchbs
ft56qsivt74/lib/libiconv.so.2: error adding symbols: DSO missing f
rom command line
>> 1616 clang-7: error: linker command failed with exit code 1 (use -v to
see invocation)
1617 make[3]: *** [Makefile:743: charset-map] Error 1
1618 make[3]: *** Waiting for unfinished jobs....
1619 mv -f .deps/gmime-stream-mem.Tpo .deps/gmime-stream-mem.Plo
1620 mv -f .deps/gmime-stream-null.Tpo .deps/gmime-stream-null.Plo
1621 mv -f .deps/gmime-stream-mmap.Tpo .deps/gmime-stream-mmap.Plo
1622 mv -f .deps/gmime-stream-pipe.Tpo .deps/gmime-stream-pipe.Plo

See build log for details:
/home/rccs-sdt/a01008/spack-stage/spack-stage-gmime-2.6.23-fkvsbtot3efjeefh2goxcrtdjh432czm/spack-build-out.txt


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