List of Open Source Software which can be built on Fugaku

Spack logo
Spack will be used to manage open source software packages on Fugaku. Fugaku users can easily use pre-installed packages and built packages based on Spack recipes. The following list shows the results of building/compiling packages for aarch64 according to the Spack recipes. Note that the results in this list do not guarantee that each package will work properly. On the other hand, Fujitsu will provide the following packages compiled with Fujitsu compiler on Fugaku as "external" packages, of which Spack can be aware.
  • OpenJDK 11
  • Ruby 2.6.5 or later
  • Python2 2.7.15
  • Python3 3.6.8
  • Numpy 1.14.3
  • SciPy 1.0.0
  • Eclipse IDE 2019-09 R Packages
Please contact us from email:

grabix 0.1.7

Compiler Fujitsu Compiler 4.7.0
Result Dependency Error

Failed Reason

Failed to install dependency package :
------------------------------------------------
==> Installing grabix-0.1.7-ctynswokmnosnby5spnp4k6rtrw5ngks
==> No binary for grabix-0.1.7-ctynswokmnosnby5spnp4k6rtrw5ngks found: installing from source
==> Fetching https://mirror.spack.io/_source-cache/archive/d9/d90735c55c0985a4d751858d7ce9e36ad534fff4103257e8e981e34d5c915b28.tar.gz
==> No patches needed for grabix
==> grabix: Executing phase: 'edit'
==> grabix: Executing phase: 'build'
==> Error: ProcessError: Command exited with status 2:
'make' '-j16'

3 errors found in build log:
1 ==> grabix: Executing phase: 'edit'
2 ==> [2022-03-02-07:39:52.827667] Using default implementation: skipp
ing edit phase.
3 ==> grabix: Executing phase: 'build'
4 ==> [2022-03-02-07:39:52.963532] 'make' '-j16'
5 gcc -Wall -O2 -o grabix grabix_main.cpp grabix.cpp bgzf.c -lstdc++ -
lz
6 grabix.cpp: In function 'int create_grabix_index(std::__cxx11::strin
g)':
>> 7 grabix.cpp:81:15: error: invalid conversion from 'char' to 'char*' [
-fpermissive]
8 line->s = '\0';
9 ^~~~
10 grabix.cpp: In function 'int grab(std::__cxx11::string, int64_t, int
64_t)':
>> 11 grabix.cpp:213:19: error: invalid conversion from 'char' to 'char*'
[-fpermissive]
12 line->s = '\0';
13 ^~~~
14 grabix.cpp: In function 'int random(std::__cxx11::string, uint64_t)'
:
>> 15 grabix.cpp:285:19: error: invalid conversion from 'char' to 'char*'
[-fpermissive]
16 line->s = '\0';
17 ^~~~
18 make: *** [Makefile:2: all] Error 1

See build log for details:
/home/rccs-sdt/a01008/spack-stage/spack-stage-grabix-0.1.7-ctynswokmnosnby5spnp4k6rtrw5ngks/spack-build-out.txt


<= Back to list