hal 2.1
Compiler |
Fujitsu Compiler 4.7.0 |
Result |
Dependency Error |
Failed Reason
Failed to install dependency package :
------------------------------------------------
[+] /usr (external ncurses-6.1-qbvus6vwvtyxe33hxq4hbpazkrpy6ctb)
[+] /usr (external pkgconf-1.4.2-x2r3t6jrikcoqgyvulfa2xm3cgearc2z)
[+] /usr (external zlib-1.2.11-o3hvygtdcp6vg3bpvsrurq4hgklwtype)
[+] /vol0003/rccs-sdt/a01008/opt/python/3.9.9/fj (external python-3.9.9-3wcip6atrybofsb566d7pjqwhl76u4dp)
==> Installing sonlib-2020-04-01-ckzani2nulnds2k3ejoxz4offjdohywc
==> No binary for sonlib-2020-04-01-ckzani2nulnds2k3ejoxz4offjdohywc found: installing from source
==> No patches needed for sonlib
==> sonlib: Executing phase: 'edit'
==> sonlib: Executing phase: 'build'
==> sonlib: Executing phase: 'install'
==> sonlib: Successfully installed sonlib-2020-04-01-ckzani2nulnds2k3ejoxz4offjdohywc
Fetch: 7.43s. Build: 49.66s. Total: 57.09s.
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/sonlib-2020-04-01-ckzani2nulnds2k3ejoxz4offjdohywc
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/cmake-3.21.4-vgsk3aw6j4szlnkzjz3u57u7qtoosnkz
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/py-setuptools-58.2.0-nwtt7d5cczfaezzecmrcr4swo63tvrg2
==> Installing hdf5-1.10.7-27uylmg4ru4wkllb5x37g752qfjf7anu
==> No binary for hdf5-1.10.7-27uylmg4ru4wkllb5x37g752qfjf7anu found: installing from source
==> Using cached archive: /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/var/spack/cache/_source-cache/archive/7a/7a1a0a54371275ce2dfc5cd093775bb025c365846512961e7e5ceaecb437ef15.tar.gz
==> Ran patch() for hdf5
==> hdf5: Executing phase: 'cmake'
==> hdf5: Executing phase: 'build'
==> hdf5: Executing phase: 'install'
==> hdf5: Successfully installed hdf5-1.10.7-27uylmg4ru4wkllb5x37g752qfjf7anu
Fetch: 0.18s. Build: 6m 6.14s. Total: 6m 6.32s.
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/hdf5-1.10.7-27uylmg4ru4wkllb5x37g752qfjf7anu
==> Installing py-sonlib-20200401-yvsch762glstms7c6ug4jc3c6qt4qcc3
==> No binary for py-sonlib-20200401-yvsch762glstms7c6ug4jc3c6qt4qcc3 found: installing from source
==> Using cached archive: /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/var/spack/cache/_source-cache/git//ComparativeGenomicsToolkit/sonLib.git/7ebe2ede05a6ee366d93a7a993db69a99943a68f.tar.gz
==> No patches needed for py-sonlib
==> Warning: Fetching from mirror without a checksum!
This package is normally checked out from a version control system, but it has been archived on a spack mirror. This means we cannot know a checksum for the tarball in advance. Be sure that your connection to this mirror is secure!
==> py-sonlib: Executing phase: 'build'
==> py-sonlib: Executing phase: 'install'
==> py-sonlib: Successfully installed py-sonlib-20200401-yvsch762glstms7c6ug4jc3c6qt4qcc3
Fetch: 0.01s. Build: 8.51s. Total: 8.53s.
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/py-sonlib-20200401-yvsch762glstms7c6ug4jc3c6qt4qcc3
==> Warning: Skipping build of hal-2.1-qn75kbi4uqkdwzat3x66szyuhqb5a4hz since py-sonlib-20200401-yvsch762glstms7c6ug4jc3c6qt4qcc3 failed
==> Error: Failed to install py-sonlib due to CorruptDatabaseError: error parsing database:
[Errno 2] No such file or directory: '/vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/.spack-db/index.json'
==> Error: hal-2.1-qn75kbi4uqkdwzat3x66szyuhqb5a4hz: Package was not installed
==> Error: Installation request failed. Refer to reported errors for failing package(s).
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