List of Open Source Software which can be built on Fugaku

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Spack will be used to manage open source software packages on Fugaku. Fugaku users can easily use pre-installed packages and built packages based on Spack recipes. The following list shows the results of building/compiling packages for aarch64 according to the Spack recipes. Note that the results in this list do not guarantee that each package will work properly. On the other hand, Fujitsu will provide the following packages compiled with Fujitsu compiler on Fugaku as "external" packages, of which Spack can be aware.
  • OpenJDK 11
  • Ruby 2.6.5 or later
  • Python2 2.7.15
  • Python3 3.6.8
  • Numpy 1.14.3
  • SciPy 1.0.0
  • Eclipse IDE 2019-09 R Packages
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hpctoolkit 2021.10.15

Compiler Fujitsu Compiler 4.7.0
Result Dependency Error

Failed Reason

Failed to install dependency package :
------------------------------------------------
==> Warning: Skipping build of hpctoolkit-2021.10.15-36ak473oyareeqcwi42q23oluusd4nds since hpcviewer-2021.10-i7axv2hidmmugqd3n6uykvn5xhn6z626 failed
==> Fetching https://mirror.spack.io/_source-cache/archive/37/377d376919be19f07c7e7adeeded088a525be40353f6d938a78e4f986bce2ae0.tar.gz
==> No patches needed for mbedtls
==> mbedtls: Executing phase: 'edit'
==> mbedtls: Executing phase: 'build'
==> mbedtls: Executing phase: 'install'
==> mbedtls: Successfully installed mbedtls-3.0.0-xnvlx4xgmvmyhktodb6frqck5pbyarvl
Fetch: 1.35s. Build: 3m 23.67s. Total: 3m 25.02s.
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/mbedtls-3.0.0-xnvlx4xgmvmyhktodb6frqck5pbyarvl
[+] /usr (external autoconf-2.69-me3qacnq6as2fvkhuiia2ks5udajax3b)
[+] /usr (external automake-1.16.1-gbketv7wv244mk5mkf65hyjxew4yocxo)
[+] /usr (external libtool-2.4.6-snb3wjzerg4q7w57akrhqlg2hfvalawy)
[+] /usr (external m4-1.4.18-zz6lq3qkexluljpiw5yxqyozzhkijvpn)
[+] /usr (external numactl-2.0.12-qx3wztjfpiy4ddss4eeyowibeneb767k)
[+] /usr (external papi-5.6.0-37ay4vfagwhbdxubdpm4k3roods74wk7)
[+] /usr (external curl-7.61.1-s5ho6wv4jx7d2f2vj27fvdaok5ajslfc)
==> Installing boost-1.77.0-q5i7haiemtytzan7svl3lywcwsxvji7i
==> No binary for boost-1.77.0-q5i7haiemtytzan7svl3lywcwsxvji7i found: installing from source
1 out of 1 hunk FAILED -- saving rejects to file tools/build/src/tools/clang-linux.jam.rej
==> Using cached archive: /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/var/spack/cache/_source-cache/archive/fc/fc9f85fc030e233142908241af7a846e60630aa7388de9a5fafb1f3a26840854.tar.bz2
==> Using cached archive: /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/var/spack/cache/_source-cache/archive/93/93f4aad8f88d1437e50d95a2d066390ef3753b99ef5de24f7a46bc083bd6df06
==> Patch /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/var/spack/repos/builtin/packages/boost/fujitsu_version_analysis.patch failed.
==> Error: ProcessError: Command exited with status 1:
'/usr/bin/patch' '-s' '-p' '1' '-i' '/vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/var/spack/repos/builtin/packages/boost/fujitsu_version_analysis.patch' '-d' '.'
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/cmake-3.21.4-vgsk3aw6j4szlnkzjz3u57u7qtoosnkz
==> Installing libdwarf-20180129-sy77byx5ltwjgbopuuozivhgssb4nkwh
==> No binary for libdwarf-20180129-sy77byx5ltwjgbopuuozivhgssb4nkwh found: installing from source
==> Warning: Skipping build of dyninst-11.0.1-v5n2nptr2jfwhgkesiqyjk7fe4fvhn5c since boost-1.77.0-q5i7haiemtytzan7svl3lywcwsxvji7i failed
==> Using cached archive: /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/var/spack/cache/_source-cache/archive/8b/8bd91b57064b0c14ade5a009d3a1ce819f1b6ec0e189fc876eb8f42a8720d8a6.tar.gz
==> Ran patch() for libdwarf
==> libdwarf: Executing phase: 'install'
==> libdwarf: Successfully installed libdwarf-20180129-sy77byx5ltwjgbopuuozivhgssb4nkwh
Fetch: 0.07s. Build: 2m 59.05s. Total: 2m 59.12s.
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/libdwarf-20180129-sy77byx5ltwjgbopuuozivhgssb4nkwh
==> Installing libmonitor-2021.04.27-uawrpcjvimvqu4mzg5jkbr5bjfngwwzu
==> No binary for libmonitor-2021.04.27-uawrpcjvimvqu4mzg5jkbr5bjfngwwzu found: installing from source
==> No patches needed for libmonitor
==> libmonitor: Executing phase: 'autoreconf'
==> libmonitor: Executing phase: 'configure'
==> libmonitor: Executing phase: 'build'
==> libmonitor: Executing phase: 'install'
==> libmonitor: Successfully installed libmonitor-2021.04.27-uawrpcjvimvqu4mzg5jkbr5bjfngwwzu
Fetch: 5.96s. Build: 1m 51.07s. Total: 1m 57.03s.
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/libmonitor-2021.04.27-uawrpcjvimvqu4mzg5jkbr5bjfngwwzu
==> Installing libiberty-2.33.1-cscicmrbst3h4fdonsvac5y23ips6yln
==> No binary for libiberty-2.33.1-cscicmrbst3h4fdonsvac5y23ips6yln found: installing from source
==> Using cached archive: /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/var/spack/cache/_source-cache/archive/ab/ab66fc2d1c3ec0359b8e08843c9f33b63e8707efdff5e4cc5c200eae24722cbf.tar.xz
==> No patches needed for libiberty
==> libiberty: Executing phase: 'autoreconf'
==> libiberty: Executing phase: 'configure'
==> libiberty: Executing phase: 'build'
==> libiberty: Executing phase: 'install'
==> libiberty: Successfully installed libiberty-2.33.1-cscicmrbst3h4fdonsvac5y23ips6yln
Fetch: 0.37s. Build: 14m 45.68s. Total: 14m 46.05s.
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/libiberty-2.33.1-cscicmrbst3h4fdonsvac5y23ips6yln
==> Installing libunwind-1.5.0-lpmf7iuh75feyqc7x3tgk474d4ykscjb
==> No binary for libunwind-1.5.0-lpmf7iuh75feyqc7x3tgk474d4ykscjb found: installing from source
==> Using cached archive: /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/var/spack/cache/_source-cache/archive/90/90337653d92d4a13de590781371c604f9031cdb50520366aa1e3a91e1efb1017.tar.gz
==> No patches needed for libunwind
==> libunwind: Executing phase: 'autoreconf'
==> libunwind: Executing phase: 'configure'
==> libunwind: Executing phase: 'build'
==> libunwind: Executing phase: 'install'
==> libunwind: Successfully installed libunwind-1.5.0-lpmf7iuh75feyqc7x3tgk474d4ykscjb
Fetch: 0.05s. Build: 6m 56.35s. Total: 6m 56.40s.
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/libunwind-1.5.0-lpmf7iuh75feyqc7x3tgk474d4ykscjb
==> Installing memkind-1.10.1-4xg42j6g26zryejqqjpseymemi5urrdf
==> No binary for memkind-1.10.1-4xg42j6g26zryejqqjpseymemi5urrdf found: installing from source
==> Fetching https://mirror.spack.io/_source-cache/archive/c2/c203615d964a0bb151756ad8a5c9565391ee77d79c1f8b59d2ea8ff87989b294.tar.gz
==> Ran patch() for memkind
==> memkind: Executing phase: 'build_jemalloc'
==> memkind: Executing phase: 'autoreconf'
==> memkind: Executing phase: 'configure'
==> memkind: Executing phase: 'build'
==> Error: ProcessError: Command exited with status 2:
'make' '-j16' 'V=1'

7 errors found in build log:
6 libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'm4'.
7 libtoolize: copying file 'm4/libtool.m4'
8 libtoolize: copying file 'm4/ltoptions.m4'
9 libtoolize: copying file 'm4/ltsugar.m4'
10 libtoolize: copying file 'm4/ltversion.m4'
11 libtoolize: copying file 'm4/lt~obsolete.m4'
>> 12 configure.ac:18: installing './ar-lib'
>> 13 configure.ac:18: installing './compile'
>> 14 configure.ac:23: installing './config.guess'
>> 15 configure.ac:23: installing './config.sub'
>> 16 configure.ac:14: installing './install-sh'
>> 17 configure.ac:14: installing './missing'
18 Makefile.am: installing './depcomp'
19 parallel-tests: installing './test-driver'
20 ==> memkind: Executing phase: 'configure'
21 ==> [2022-03-05-12:00:27.818767] './configure' '--prefix=/vol0003/
rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-
rhel8-a64fx/fj-4.7.0/memkind-1.10.1-4xg42j6g26zryejqqjpseymemi5urr
df'
22 checking for a BSD-compatible install... /usr/bin/install -c
23 checking whether build environment is sane... yes

...

1022 ar crus lib/libjemalloc.a src/jemalloc.o src/arena.o src/backgroun
d_thread.o src/base.o src/bin.o src/bitmap.o src/ckh.o src/ctl.o s
rc/div.o src/extent.o src/extent_dss.o src/extent_mmap.o src/hash.
o src/hook.o src/large.o src/log.o src/malloc_io.o src/mutex.o src
/mutex_pool.o src/nstime.o src/pages.o src/prng.o src/prof.o src/r
tree.o src/safety_check.o src/stats.o src/sc.o src/sz.o src/tcache
.o src/test_hooks.o src/ticker.o src/tsd.o src/witness.o src/jemal
loc_cpp.o
1023 make[1]: Leaving directory '/vol0003/rccs-sdt/a01008/spack-stage/s
pack-stage-memkind-1.10.1-4xg42j6g26zryejqqjpseymemi5urrdf/spack-s
rc/jemalloc'
1024 depbase=`echo src/hbwmalloc.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'
`;\
1025 /bin/sh ./libtool --tag=CC --mode=compile /vol0003/rccs-sdt/a01
008/spack-all-test/env-20220225/spack/lib/spack/env/fj/fcc -DHAVE_
CONFIG_H -I. -I./include -I./jemalloc/include -Itest/gtest_fused
-DMEMKIND_DEPRECATED\(x\)=x -fvisibility=hidden -Wall -Werror -D_
GNU_SOURCE -DJE_PREFIX=jemk_ -g -O2 -pthread -fstack-protector -D_
FORTIFY_SOURCE=2 -MT src/hbwmalloc.lo -MD -MP -MF $depbase.Tpo -c
-o src/hbwmalloc.lo src/hbwmalloc.c &&\
1026 mv -f $depbase.Tpo $depbase.Plo
1027 libtool: compile: /vol0003/rccs-sdt/a01008/spack-all-test/env-202
20225/spack/lib/spack/env/fj/fcc -DHAVE_CONFIG_H -I. -I./include -
I./jemalloc/include -Itest/gtest_fused "-DMEMKIND_DEPRECATED(x)=x"
-fvisibility=hidden -Wall -Werror -D_GNU_SOURCE -DJE_PREFIX=jemk_
-g -O2 -pthread -fstack-protector -D_FORTIFY_SOURCE=2 -MT src/hbw
malloc.lo -MD -MP -MF src/.deps/hbwmalloc.Tpo -c src/hbwmalloc.c
>> 1028 clang-7: error: unknown argument: '-fstack-protector'
1029 make: *** [Makefile:2809: src/hbwmalloc.lo] Error 1

See build log for details:
/home/rccs-sdt/a01008/spack-stage/spack-stage-memkind-1.10.1-4xg42j6g26zryejqqjpseymemi5urrdf/spack-build-out.txt

==> Installing xerces-c-3.2.3-lelhirfjggtda6g535rfljeldkcc75pa
==> No binary for xerces-c-3.2.3-lelhirfjggtda6g535rfljeldkcc75pa found: installing from source
==> Using cached archive: /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/var/spack/cache/_source-cache/archive/45/45c2329e684405f2b8854ecbddfb8d5b055cdf0fe4d35736cc352c504989bbb6.tar.bz2
==> No patches needed for xerces-c
==> xerces-c: Executing phase: 'autoreconf'
==> xerces-c: Executing phase: 'configure'
==> xerces-c: Executing phase: 'build'
==> xerces-c: Executing phase: 'install'
==> xerces-c: Successfully installed xerces-c-3.2.3-lelhirfjggtda6g535rfljeldkcc75pa
Fetch: 0.10s. Build: 16m 58.91s. Total: 16m 59.01s.
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/xerces-c-3.2.3-lelhirfjggtda6g535rfljeldkcc75pa
==> Error: hpctoolkit-2021.10.15-36ak473oyareeqcwi42q23oluusd4nds: Package was not installed
==> Error: Installation request failed. Refer to reported errors for failing package(s).
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/intel-tbb-2020.3-7babpk2kuh5ydo4vmbilzrnkzcz4pxdq
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/gotcha-1.0.3-57ed4ybkniv5z4eaaag6pdknzynqzx4j


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