List of Open Source Software which can be built on Fugaku

Spack logo
Spack will be used to manage open source software packages on Fugaku. Fugaku users can easily use pre-installed packages and built packages based on Spack recipes. The following list shows the results of building/compiling packages for aarch64 according to the Spack recipes. Note that the results in this list do not guarantee that each package will work properly. On the other hand, Fujitsu will provide the following packages compiled with Fujitsu compiler on Fugaku as "external" packages, of which Spack can be aware.
  • OpenJDK 11
  • Ruby 2.6.5 or later
  • Python2 2.7.15
  • Python3 3.6.8
  • Numpy 1.14.3
  • SciPy 1.0.0
  • Eclipse IDE 2019-09 R Packages
Please contact us from email:

maq 0.7.1

Compiler Fujitsu Compiler 4.7.0
Result Dependency Error

Failed Reason

Failed to install dependency package :
------------------------------------------------
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/gnuconfig-2021-08-14-ezyvb3gy7i726n45kwb44a4vxle3if3i
==> Installing maq-0.7.1-vu5geeay7q4br4sopublwfgsvendzuiv
==> No binary for maq-0.7.1-vu5geeay7q4br4sopublwfgsvendzuiv found: installing from source
==> Fetching https://mirror.spack.io/_source-cache/archive/e1/e1671e0408b0895f5ab943839ee8f28747cf5f55dc64032c7469b133202b6de2.tar.bz2
==> No patches needed for maq
==> maq: Executing phase: 'autoreconf'
==> maq: Executing phase: 'configure'
==> maq: Executing phase: 'build'
==> Error: ProcessError: Command exited with status 2:
'make' '-j16' 'V=1'

2 errors found in build log:
148
~ ~~~~^~~~~~~~~
149 assemble.cc:106:63: note: place parentheses around the '&' expressi
on to silence this warning
150 if (info>>24 < 4 && (info>>8&0x3f) != 0) info = 4<<
24 | info&0xffffff;
151
^
152
( )
153 In file included from mapcheck.cc:11:
>> 154 ./stdhash.hh:415:13: error: use of undeclared identifier 'direct_in
sert_aux'
155 int ret = direct_insert_aux(key, this->n_capacity,
this->keys, this->flags, &i);
156 ^
157 this->
158 mapcheck.cc:24:10: note: in instantiation of member function 'hash_
set_misc<unsigned long long>::insert' requested here
159 hash->insert((bit64_t)seqid<<32 | (pos-1));
160 ^

...

178 ~~^~~~
179 indel_soa.cc:56:40: note: place parentheses around the '-' expressi
on to silence this warning
180 if (int(m1->seq[k]>>6) == int(s>>(31-j<<1)&
3)) ++score;
181 ^
182 ( )
183 In file included from rmdup.cc:7:
>> 184 ./stdhash.hh:496:13: error: use of undeclared identifier 'direct_in
sert_aux'
185 int ret = direct_insert_aux(key, this->n_capacity,
this->keys, this->flags, &i);
186 ^
187 this->
188 rmdup.cc:98:16: note: in instantiation of member function 'hash_map
_misc<unsigned long long, maqmap1_t *>::insert' requested here
189 best_hash->insert(key, p);
190 ^

See build log for details:
/home/rccs-sdt/a01008/spack-stage/spack-stage-maq-0.7.1-vu5geeay7q4br4sopublwfgsvendzuiv/spack-build-out.txt


<= Back to list