List of Open Source Software which can be built on Fugaku

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Spack will be used to manage open source software packages on Fugaku. Fugaku users can easily use pre-installed packages and built packages based on Spack recipes. The following list shows the results of building/compiling packages for aarch64 according to the Spack recipes. Note that the results in this list do not guarantee that each package will work properly. On the other hand, Fujitsu will provide the following packages compiled with Fujitsu compiler on Fugaku as "external" packages, of which Spack can be aware.
  • OpenJDK 11
  • Ruby 2.6.5 or later
  • Python2 2.7.15
  • Python3 3.6.8
  • Numpy 1.14.3
  • SciPy 1.0.0
  • Eclipse IDE 2019-09 R Packages
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mash 2.3

Compiler Fujitsu Compiler 4.7.0
Result Dependency Error

Failed Reason

Failed to install dependency package :
------------------------------------------------
[+] /usr (external autoconf-2.69-me3qacnq6as2fvkhuiia2ks5udajax3b)
[+] /usr (external automake-1.16.1-gbketv7wv244mk5mkf65hyjxew4yocxo)
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/gnuconfig-2021-08-14-ezyvb3gy7i726n45kwb44a4vxle3if3i
[+] /usr (external libtool-2.4.6-snb3wjzerg4q7w57akrhqlg2hfvalawy)
[+] /usr (external m4-1.4.18-zz6lq3qkexluljpiw5yxqyozzhkijvpn)
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/gsl-2.7-fm4fuduogrkyoqft5vpbzv7ylz5ejlrc
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/capnproto-0.8.0-olpy6vvmombdcgzelxizwah4eykqfepn
==> Installing mash-2.3-jalhajdu6b7ykaurpdr7yaeopiw6omim
==> No binary for mash-2.3-jalhajdu6b7ykaurpdr7yaeopiw6omim found: installing from source
==> Fetching https://mirror.spack.io/_source-cache/archive/f9/f96cf7305e010012c3debed966ac83ceecac0351dbbfeaa6cd7ad7f068d87fe1.tar.gz
==> No patches needed for mash
==> mash: Executing phase: 'autoreconf'
==> mash: Executing phase: 'configure'
==> mash: Executing phase: 'build'
==> Error: ProcessError: Command exited with status 2:
'make' '-j16' 'V=1'

7 errors found in build log:
103 clang-7: warning: -Wl,--wrap=memcpy: 'linker' input unused [-Wunuse
d-command-line-argument]
104 1 warning generated.
105 ar -cr libmash.a src/mash/Command.o src/mash/CommandBounds.o src/ma
sh/CommandContain.o src/mash/CommandDistance.o src/mash/CommandTaxS
creen.o src/mash/CommandScreen.o src/mash/CommandTriangle.o src/mas
h/CommandFind.o src/mash/CommandInfo.o src/mash/CommandPaste.o src/
mash/CommandSketch.o src/mash/CommandList.o src/mash/hash.o src/mas
h/HashList.o src/mash/HashPriorityQueue.o src/mash/HashSet.o src/ma
sh/MinHashHeap.o src/mash/MurmurHash3.o src/mash/mash.o src/mash/Sk
etch.o src/mash/sketchParameterSetup.o src/mash/capnp/MinHash.capnp
.o
106 ranlib libmash.a
107 /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/lib/spac
k/env/fj/case-insensitive/FCC -O3 -std=c++14 -Isrc -I/vol0003/rccs-
sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-
a64fx/fj-4.7.0/capnproto-0.8.0-olpy6vvmombdcgzelxizwah4eykqfepn/inc
lude -I/vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/o
pt/spack/linux-rhel8-a64fx/fj-4.7.0/gsl-2.7-fm4fuduogrkyoqft5vpbzv7
ylz5ejlrc/include -include src/mash/memcpyLink.h -Wl,--wrap=memcpy
-o mash src/mash/memcpyWrap.o libmash.a /vol0003/rccs-sdt/a01008/s
pack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7
.0/capnproto-0.8.0-olpy6vvmombdcgzelxizwah4eykqfepn/lib/libcapnp.a
/vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spac
k/linux-rhel8-a64fx/fj-4.7.0/capnproto-0.8.0-olpy6vvmombdcgzelxizwa
h4eykqfepn/lib/libkj.a -L/vol0003/rccs-sdt/a01008/spack-all-test/en
v-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/gsl-2.7-fm4fu
duogrkyoqft5vpbzv7ylz5ejlrc/lib -lgsl -lgslcblas -lstdc++ -lz -lm -
lpthread
108 libmash.a(mash.o): In function `copy':
>> 109 /usr/lib/gcc/aarch64-redhat-linux/8/../../../../include/c++/8/bits/
char_traits.h:352: undefined reference to `memcpy@@GLIBC_2.2.5'
>> 110 /usr/lib/gcc/aarch64-redhat-linux/8/../../../../include/c++/8/bits/
char_traits.h:352: undefined reference to `memcpy@@GLIBC_2.2.5'
>> 111 /usr/lib/gcc/aarch64-redhat-linux/8/../../../../include/c++/8/bits/
char_traits.h:352: undefined reference to `memcpy@@GLIBC_2.2.5'
>> 112 /usr/lib/gcc/aarch64-redhat-linux/8/../../../../include/c++/8/bits/
char_traits.h:352: undefined reference to `memcpy@@GLIBC_2.2.5'
>> 113 /usr/lib/gcc/aarch64-redhat-linux/8/../../../../include/c++/8/bits/
char_traits.h:352: undefined reference to `memcpy@@GLIBC_2.2.5'
>> 114 libmash.a(mash.o):/usr/lib/gcc/aarch64-redhat-linux/8/../../../../i
nclude/c++/8/bits/char_traits.h:352: more undefined references to `
memcpy@@GLIBC_2.2.5' follow
>> 115 clang-7: error: linker command failed with exit code 1 (use -v to s
ee invocation)
116 make: *** [Makefile:41: mash] Error 1

See build log for details:
/home/rccs-sdt/a01008/spack-stage/spack-stage-mash-2.3-jalhajdu6b7ykaurpdr7yaeopiw6omim/spack-build-out.txt


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