List of Open Source Software which can be built on Fugaku

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Spack will be used to manage open source software packages on Fugaku. Fugaku users can easily use pre-installed packages and built packages based on Spack recipes. The following list shows the results of building/compiling packages for aarch64 according to the Spack recipes. Note that the results in this list do not guarantee that each package will work properly. On the other hand, Fujitsu will provide the following packages compiled with Fujitsu compiler on Fugaku as "external" packages, of which Spack can be aware.
  • OpenJDK 11
  • Ruby 2.6.5 or later
  • Python2 2.7.15
  • Python3 3.6.8
  • Numpy 1.14.3
  • SciPy 1.0.0
  • Eclipse IDE 2019-09 R Packages
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mirdeep2 0.0.8

Compiler Fujitsu Compiler 4.7.0
Result Dependency Error

Failed Reason

Failed to install dependency package :
------------------------------------------------
[+] /usr (external zlib-1.2.11-o3hvygtdcp6vg3bpvsrurq4hgklwtype)
[+] /usr (external perl-5.26.3-cfeod657avcbjzlstrxizeulrdfnqb3r)
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/gnuconfig-2021-08-14-ezyvb3gy7i726n45kwb44a4vxle3if3i
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/libsvm-323-qjfodzo5tnn44arisu26dukpz3r36pif
[+] /vol0003/rccs-sdt/a01008/opt/python/3.9.9/fj (external python-3.9.9-3wcip6atrybofsb566d7pjqwhl76u4dp)
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/bowtie-1.3.0-iqyjchyfg2fujuy2rgo6qvi52l3xf3x2
==> Installing perl-padwalker-2.2-h63iz22ibeordgi77oe7r44krxbnysyw
==> No binary for perl-padwalker-2.2-h63iz22ibeordgi77oe7r44krxbnysyw found: installing from source
==> Fetching https://mirror.spack.io/_source-cache/archive/fc/fc1df2084522e29e892da393f3719d2c1be0da022fdd89cff4b814167aecfea3.tar.gz
==> No patches needed for perl-padwalker
==> perl-padwalker: Executing phase: 'configure'
==> perl-padwalker: Executing phase: 'build'
==> perl-padwalker: Executing phase: 'install'
==> perl-padwalker: Successfully installed perl-padwalker-2.2-h63iz22ibeordgi77oe7r44krxbnysyw
Fetch: 0.62s. Build: 6.09s. Total: 6.71s.
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/perl-padwalker-2.2-h63iz22ibeordgi77oe7r44krxbnysyw
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/perl-sub-uplevel-0.2800-qogitzgr7loanktaeo5u3qiia6p4iawp
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/perl-font-ttf-1.06-5a5m7jmue6qzowqiu2obdkqpz5e6manw
==> Installing perl-devel-cycle-1.12-6uevs6yiz3anoicz4nvggounvb7xwi3r
==> No binary for perl-devel-cycle-1.12-6uevs6yiz3anoicz4nvggounvb7xwi3r found: installing from source
==> Fetching https://mirror.spack.io/_source-cache/archive/fd/fd3365c4d898b2b2bddbb78a46d507a18cca8490a290199547dab7f1e7390bc2.tar.gz
==> No patches needed for perl-devel-cycle
==> perl-devel-cycle: Executing phase: 'configure'
==> perl-devel-cycle: Executing phase: 'build'
==> perl-devel-cycle: Executing phase: 'install'
==> perl-devel-cycle: Successfully installed perl-devel-cycle-1.12-6uevs6yiz3anoicz4nvggounvb7xwi3r
Fetch: 0.58s. Build: 3.08s. Total: 3.65s.
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/perl-devel-cycle-1.12-6uevs6yiz3anoicz4nvggounvb7xwi3r
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/gsl-2.7-fm4fuduogrkyoqft5vpbzv7ylz5ejlrc
==> Installing squid-1.9g-zikaf4pzjigvbckv7lxnqj6cehbnfnyr
==> No binary for squid-1.9g-zikaf4pzjigvbckv7lxnqj6cehbnfnyr found: installing from source
==> Fetching https://mirror.spack.io/_source-cache/archive/30/302f42e8794aa4dbcfa0996c14fb7a70a7c4397fc45c2bbd2748055460d8dca7.tar.gz
==> No patches needed for squid
==> squid: Executing phase: 'autoreconf'
==> squid: Executing phase: 'configure'
==> squid: Executing phase: 'build'
==> squid: Executing phase: 'install'
==> squid: Successfully installed squid-1.9g-zikaf4pzjigvbckv7lxnqj6cehbnfnyr
Fetch: 0.95s. Build: 1m 21.62s. Total: 1m 22.57s.
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/squid-1.9g-zikaf4pzjigvbckv7lxnqj6cehbnfnyr
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/perl-test-exception-0.43-m4dsqhq4swnbsp6nplqwvmf2gmsefisb
==> Installing perl-test-memory-cycle-1.06-xs4ihf2dcood6qwz5d2xwnccsltwlbcm
==> No binary for perl-test-memory-cycle-1.06-xs4ihf2dcood6qwz5d2xwnccsltwlbcm found: installing from source
==> Fetching https://mirror.spack.io/_source-cache/archive/9d/9d53ddfdc964cd8454cb0da4c695b6a3ae47b45839291c34cb9d8d1cfaab3202.tar.gz
==> No patches needed for perl-test-memory-cycle
==> perl-test-memory-cycle: Executing phase: 'configure'
==> perl-test-memory-cycle: Executing phase: 'build'
==> perl-test-memory-cycle: Executing phase: 'install'
==> perl-test-memory-cycle: Successfully installed perl-test-memory-cycle-1.06-xs4ihf2dcood6qwz5d2xwnccsltwlbcm
Fetch: 0.60s. Build: 3.80s. Total: 4.40s.
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/perl-test-memory-cycle-1.06-xs4ihf2dcood6qwz5d2xwnccsltwlbcm
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/viennarna-2.4.3-hgughivnc3as4ssj5eiwrdravntfp4bd
==> Installing randfold-2.0.1-kf57kwgqptozlzteqrvhwjjvzecfmkt3
==> No binary for randfold-2.0.1-kf57kwgqptozlzteqrvhwjjvzecfmkt3 found: installing from source
==> Fetching https://mirror.spack.io/_source-cache/archive/b2/b286145deb9ac6197062d98e209da095f00c45a5a615616bcf2b2a6609ed113f.tar.gz
==> No patches needed for randfold
==> randfold: Executing phase: 'edit'
==> randfold: Executing phase: 'build'
==> Error: ProcessError: Command exited with status 2:
'make' '-j16'

1 error found in build log:
5 gcc -c energy_par.c
6 gcc -c params.c
7 gcc -c fold.c
8 gcc -c fold_vars.c
9 gcc -c utils.c
10 gcc -O3 -I. -o randfold params.o energy_par.o fold.o fold_vars.o ut
ils.o randfold.c -lm -lsquid
>> 11 randfold.c:25:9: fatal error: squid.h: No such file or directory
12 #include<squid.h>
13 ^~~~~~~~~
14 compilation terminated.
15 make: *** [Makefile:7: randfold] Error 1

See build log for details:
/home/rccs-sdt/a01008/spack-stage/spack-stage-randfold-2.0.1-kf57kwgqptozlzteqrvhwjjvzecfmkt3/spack-build-out.txt

==> Installing perl-pdf-api2-2.033-caczq2lmlyuw5thw37apm4fvmz4yfd4d
==> No binary for perl-pdf-api2-2.033-caczq2lmlyuw5thw37apm4fvmz4yfd4d found: installing from source
==> Warning: Skipping build of mirdeep2-0.0.8-k5wun7o5wwwubjumdist6ugjpeaflknw since randfold-2.0.1-kf57kwgqptozlzteqrvhwjjvzecfmkt3 failed
==> Fetching https://mirror.spack.io/_source-cache/archive/9c/9c0866ec1a3053f73afaca5f5cdbe6925903b4ce606f4bf4ac317731a69d27a0.tar.gz
==> No patches needed for perl-pdf-api2
==> perl-pdf-api2: Executing phase: 'configure'
==> perl-pdf-api2: Executing phase: 'build'
==> perl-pdf-api2: Executing phase: 'install'
==> perl-pdf-api2: Successfully installed perl-pdf-api2-2.033-caczq2lmlyuw5thw37apm4fvmz4yfd4d
Fetch: 1.29s. Build: 18.59s. Total: 19.88s.
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/perl-pdf-api2-2.033-caczq2lmlyuw5thw37apm4fvmz4yfd4d
==> Error: mirdeep2-0.0.8-k5wun7o5wwwubjumdist6ugjpeaflknw: Package was not installed
==> Error: Installation request failed. Refer to reported errors for failing package(s).


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