List of Open Source Software which can be built on Fugaku

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Spack will be used to manage open source software packages on Fugaku. Fugaku users can easily use pre-installed packages and built packages based on Spack recipes. The following list shows the results of building/compiling packages for aarch64 according to the Spack recipes. Note that the results in this list do not guarantee that each package will work properly. On the other hand, Fujitsu will provide the following packages compiled with Fujitsu compiler on Fugaku as "external" packages, of which Spack can be aware.
  • OpenJDK 11
  • Ruby 2.6.5 or later
  • Python2 2.7.15
  • Python3 3.6.8
  • Numpy 1.14.3
  • SciPy 1.0.0
  • Eclipse IDE 2019-09 R Packages
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mummer4 4.0.0rc1

Compiler Fujitsu Compiler 4.7.0
Result Dependency Error

Failed Reason

Failed to install dependency package :
------------------------------------------------
[+] /usr (external gettext-0.19.8.1-seu57rrlbvdvq4fllw4fy75gelcj4jsh)
[+] /usr (external gmp-6.1.2-aweb6qdw6k72z5szxngketpntkdvprym)
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/gnuconfig-2021-08-14-ezyvb3gy7i726n45kwb44a4vxle3if3i
[+] /usr (external autoconf-2.69-me3qacnq6as2fvkhuiia2ks5udajax3b)
[+] /usr (external automake-1.16.1-gbketv7wv244mk5mkf65hyjxew4yocxo)
[+] /usr (external libtool-2.4.6-snb3wjzerg4q7w57akrhqlg2hfvalawy)
[+] /usr (external m4-1.4.18-zz6lq3qkexluljpiw5yxqyozzhkijvpn)
[+] /usr (external perl-5.26.3-cfeod657avcbjzlstrxizeulrdfnqb3r)
[+] /usr (external readline-7.0-776innbqk3ca64hss3u4zvuh46f5xe4y)
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/libsigsegv-2.13-k2r2mblre6vfu6wntucdd77fue353zhd
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/sed-4.2.2-iqhhn62dw377ouch35maia5ayjg7j7gv
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/autoconf-archive-2019.01.06-5xupizjwrucyxednhyet5tkdx7jnlc4n
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/texinfo-6.5-dqgnoe2tyqkmtth6epsjkfp5uwgwvtwz
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/mpfr-4.1.0-lgxxsheprifg75vh4dowz2xxfiy23x4s
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/gawk-5.1.0-y6txy7in44yyc4bmyentskfsjj7j6gx7
==> Installing mummer4-4.0.0rc1-eu756jwojvmzw364za54lag7y5jjysrk
==> No binary for mummer4-4.0.0rc1-eu756jwojvmzw364za54lag7y5jjysrk found: installing from source
==> Fetching https://mirror.spack.io/_source-cache/archive/85/85006adb2d6539c2f738c3e3bb14b58bb6f62cd6c6ca5ede884a87ae76e07d1d.tar.gz
==> No patches needed for mummer4
==> mummer4: Executing phase: 'autoreconf'
==> mummer4: Executing phase: 'configure'
==> mummer4: Executing phase: 'build'
==> Error: ProcessError: Command exited with status 2:
'make' '-j16' 'V=1'

1 error found in build log:
223 libtool: compile: /vol0003/rccs-sdt/a01008/spack-all-test/env-2022
0225/spack/lib/spack/env/fj/case-insensitive/FCC -DHAVE_CONFIG_H -I
. -I/home/rccs-sdt/a01008/spack-stage/spack-stage-mummer4-4.0.0rc1-
eu756jwojvmzw364za54lag7y5jjysrk/spack-src -Wall -I/home/rccs-sdt/a
01008/spack-stage/spack-stage-mummer4-4.0.0rc1-eu756jwojvmzw364za54
lag7y5jjysrk/spack-src/include -std=c++11 -fopenmp -DNDEBUG -std=c+
+0x -g -O2 -MT src/tigr/sw_align.lo -MD -MP -MF src/tigr/.deps/sw_a
lign.Tpo -c src/tigr/sw_align.cc -fPIC -DPIC -o src/tigr/.libs/sw_
align.o
224 libtool: compile: /vol0003/rccs-sdt/a01008/spack-all-test/env-2022
0225/spack/lib/spack/env/fj/case-insensitive/FCC -DHAVE_CONFIG_H -I
. -I/home/rccs-sdt/a01008/spack-stage/spack-stage-mummer4-4.0.0rc1-
eu756jwojvmzw364za54lag7y5jjysrk/spack-src -Wall -I/home/rccs-sdt/a
01008/spack-stage/spack-stage-mummer4-4.0.0rc1-eu756jwojvmzw364za54
lag7y5jjysrk/spack-src/include -std=c++11 -fopenmp -DNDEBUG -std=c+
+0x -g -O2 -MT src/tigr/tigrinc.lo -MD -MP -MF src/tigr/.deps/tigri
nc.Tpo -c src/tigr/tigrinc.cc -fPIC -DPIC -o src/tigr/.libs/tigrin
c.o
225 libtool: compile: /vol0003/rccs-sdt/a01008/spack-all-test/env-2022
0225/spack/lib/spack/env/fj/case-insensitive/FCC -DHAVE_CONFIG_H -I
. -I/home/rccs-sdt/a01008/spack-stage/spack-stage-mummer4-4.0.0rc1-
eu756jwojvmzw364za54lag7y5jjysrk/spack-src -Wall -I/home/rccs-sdt/a
01008/spack-stage/spack-stage-mummer4-4.0.0rc1-eu756jwojvmzw364za54
lag7y5jjysrk/spack-src/include -std=c++11 -fopenmp -DNDEBUG -std=c+
+0x -g -O2 -MT src/umd/nucmer.lo -MD -MP -MF src/umd/.deps/nucmer.T
po -c src/umd/nucmer.cc -fPIC -DPIC -o src/umd/.libs/nucmer.o
226 libtool: compile: /vol0003/rccs-sdt/a01008/spack-all-test/env-2022
0225/spack/lib/spack/env/fj/case-insensitive/FCC -DHAVE_CONFIG_H -I
. -I/home/rccs-sdt/a01008/spack-stage/spack-stage-mummer4-4.0.0rc1-
eu756jwojvmzw364za54lag7y5jjysrk/spack-src -Wall -I/home/rccs-sdt/a
01008/spack-stage/spack-stage-mummer4-4.0.0rc1-eu756jwojvmzw364za54
lag7y5jjysrk/spack-src/include -std=c++11 -fopenmp -DNDEBUG -std=c+
+0x -g -O2 -MT src/tigr/tigrinc.lo -MD -MP -MF src/tigr/.deps/tigri
nc.Tpo -c src/tigr/tigrinc.cc -o src/tigr/tigrinc.o >/dev/null 2>&1
227 libtool: compile: /vol0003/rccs-sdt/a01008/spack-all-test/env-2022
0225/spack/lib/spack/env/fj/case-insensitive/FCC -DHAVE_CONFIG_H -I
. -I/home/rccs-sdt/a01008/spack-stage/spack-stage-mummer4-4.0.0rc1-
eu756jwojvmzw364za54lag7y5jjysrk/spack-src -Wall -I/home/rccs-sdt/a
01008/spack-stage/spack-stage-mummer4-4.0.0rc1-eu756jwojvmzw364za54
lag7y5jjysrk/spack-src/include -std=c++11 -fopenmp -DNDEBUG -std=c+
+0x -g -O2 -MT src/essaMEM/sssort_compact.lo -MD -MP -MF src/essaME
M/.deps/sssort_compact.Tpo -c src/essaMEM/sssort_compact.cc -o src/
essaMEM/sssort_compact.o >/dev/null 2>&1
228 libtool: compile: /vol0003/rccs-sdt/a01008/spack-all-test/env-2022
0225/spack/lib/spack/env/fj/case-insensitive/FCC -DHAVE_CONFIG_H -I
. -I/home/rccs-sdt/a01008/spack-stage/spack-stage-mummer4-4.0.0rc1-
eu756jwojvmzw364za54lag7y5jjysrk/spack-src -Wall -I/home/rccs-sdt/a
01008/spack-stage/spack-stage-mummer4-4.0.0rc1-eu756jwojvmzw364za54
lag7y5jjysrk/spack-src/include -std=c++11 -fopenmp -DNDEBUG -std=c+
+0x -g -O2 -MT src/tigr/sw_align.lo -MD -MP -MF src/tigr/.deps/sw_a
lign.Tpo -c src/tigr/sw_align.cc -o src/tigr/sw_align.o >/dev/null
2>&1
>> 229 src/tigr/postnuc.cc:174:37: error: non-constant-expression cannot b
e narrowed from type 'signed char' to 'char' in initializer list [-
Wc++11-narrowing]
230 Alignments.push_back({ *Mp, CurrCp->dirB } );
231 ^~~~~~~~~~~~
232 src/tigr/postnuc.cc:174:37: note: insert an explicit cast to silenc
e this issue
233 Alignments.push_back({ *Mp, CurrCp->dirB } );
234 ^~~~~~~~~~~~
235 static_cast<char>( )

See build log for details:
/home/rccs-sdt/a01008/spack-stage/spack-stage-mummer4-4.0.0rc1-eu756jwojvmzw364za54lag7y5jjysrk/spack-build-out.txt


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