List of Open Source Software which can be built on Fugaku
 |
Spack will be used to manage open source software packages on Fugaku.
Fugaku users can easily use pre-installed packages and built packages based on Spack recipes.
The following list shows the results of building/compiling packages for aarch64 according to the Spack recipes.
Note that the results in this list do not guarantee that each package will work properly.
On the other hand, Fujitsu will provide the following packages compiled with Fujitsu compiler on Fugaku as "external" packages, of which Spack can be aware.
|
ncbi-rmblastn 2.11.0
| Compiler | Fujitsu Compiler 4.7.0 |
|---|---|
| Result | Dependency Error |
Failed Reason
Failed to install dependency package :
------------------------------------------------
e-ncbi-rmblastn-2.11.0-m67m2kvjd6ypgi45utehtqxvyf62qfel/spack-src/
c++/include -DNCBI_BUILD_SESSION_ID=e842b7c0-6c21-4b0a-bc66-33b35
da63665 /vol0003/rccs-sdt/a01008/spack-stage/spack-stage-ncbi-rmbl
astn-2.11.0-m67m2kvjd6ypgi45utehtqxvyf62qfel/spack-src/c++/src/cor
elib/ncbiatomic.cpp -o ncbiatomic.o
1252 /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/lib/spa
ck/env/fj/fcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k
-pthread -fopenmp -O2 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -
D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -
D_THREAD_SAFE -I/vol0003/rccs-sdt/a01008/spack-stage/spack-stage-n
cbi-rmblastn-2.11.0-m67m2kvjd6ypgi45utehtqxvyf62qfel/spack-src/c++
/ReleaseMT/inc -I/vol0003/rccs-sdt/a01008/spack-stage/spack-stage-
ncbi-rmblastn-2.11.0-m67m2kvjd6ypgi45utehtqxvyf62qfel/spack-src/c+
+/include -DNCBI_BUILD_SESSION_ID=e842b7c0-6c21-4b0a-bc66-33b35da
63665 ncbicfg.c -o ncbicfg.o
1253 /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/lib/spa
ck/env/fj/case-insensitive/FCC -std=gnu++14 -c -Wall -Wno-format
-y2k -pthread -fopenmp -O2 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE
-D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT
-D_THREAD_SAFE -I/vol0003/rccs-sdt/a01008/spack-stage/spack-stage
-ncbi-rmblastn-2.11.0-m67m2kvjd6ypgi45utehtqxvyf62qfel/spack-src/c
++/ReleaseMT/inc -I/vol0003/rccs-sdt/a01008/spack-stage/spack-stag
e-ncbi-rmblastn-2.11.0-m67m2kvjd6ypgi45utehtqxvyf62qfel/spack-src/
c++/include -DNCBI_BUILD_SESSION_ID=e842b7c0-6c21-4b0a-bc66-33b35
da63665 /vol0003/rccs-sdt/a01008/spack-stage/spack-stage-ncbi-rmbl
astn-2.11.0-m67m2kvjd6ypgi45utehtqxvyf62qfel/spack-src/c++/src/cor
elib/ncbidbg.cpp -o ncbidbg.o
1254 /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/lib/spa
ck/env/fj/case-insensitive/FCC -std=gnu++14 -c -Wall -Wno-format
-y2k -pthread -fopenmp -O2 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE
-D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT
-D_THREAD_SAFE -I/vol0003/rccs-sdt/a01008/spack-stage/spack-stage
-ncbi-rmblastn-2.11.0-m67m2kvjd6ypgi45utehtqxvyf62qfel/spack-src/c
++/ReleaseMT/inc -I/vol0003/rccs-sdt/a01008/spack-stage/spack-stag
e-ncbi-rmblastn-2.11.0-m67m2kvjd6ypgi45utehtqxvyf62qfel/spack-src/
c++/include -DNCBI_BUILD_SESSION_ID=e842b7c0-6c21-4b0a-bc66-33b35
da63665 /vol0003/rccs-sdt/a01008/spack-stage/spack-stage-ncbi-rmbl
astn-2.11.0-m67m2kvjd6ypgi45utehtqxvyf62qfel/spack-src/c++/src/cor
elib/ncbidiag.cpp -o ncbidiag.o
1255 /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/lib/spa
ck/env/fj/case-insensitive/FCC -std=gnu++14 -c -Wall -Wno-format
-y2k -pthread -fopenmp -O2 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE
-D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT
-D_THREAD_SAFE -I/vol0003/rccs-sdt/a01008/spack-stage/spack-stage
-ncbi-rmblastn-2.11.0-m67m2kvjd6ypgi45utehtqxvyf62qfel/spack-src/c
++/ReleaseMT/inc -I/vol0003/rccs-sdt/a01008/spack-stage/spack-stag
e-ncbi-rmblastn-2.11.0-m67m2kvjd6ypgi45utehtqxvyf62qfel/spack-src/
c++/include -DNCBI_BUILD_SESSION_ID=e842b7c0-6c21-4b0a-bc66-33b35
da63665 /vol0003/rccs-sdt/a01008/spack-stage/spack-stage-ncbi-rmbl
astn-2.11.0-m67m2kvjd6ypgi45utehtqxvyf62qfel/spack-src/c++/src/cor
elib/ncbidiag_p.cpp -o ncbidiag_p.o
>> 1256 /vol0003/rccs-sdt/a01008/spack-stage/spack-stage-ncbi-rmblastn-2.1
1.0-m67m2kvjd6ypgi45utehtqxvyf62qfel/spack-src/c++/src/corelib/ncb
i_system.cpp:1554:36: error: invalid output constraint '=a' in asm
1257 asm volatile("cpuid" : "=a" (r[0]), "=b" (r[1]), "=c"
(r[2]), "=d" (r[3]) : "a" (func_id));
1258 ^
>> 1259 /vol0003/rccs-sdt/a01008/spack-stage/spack-stage-ncbi-rmblastn-2.1
1.0-m67m2kvjd6ypgi45utehtqxvyf62qfel/spack-src/c++/src/corelib/ncb
i_system.cpp:1561:36: error: invalid output constraint '=a' in asm
1260 asm volatile("cpuid" : "=a" (r[0]), "=b" (r[1]), "=c"
(r[2]), "=d" (r[3]) : "a" (func_id), "c" (sub_id));
1261 ^
1262 /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/lib/spa
ck/env/fj/case-insensitive/FCC -std=gnu++14 -c -Wall -Wno-format
-y2k -pthread -fopenmp -O2 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE
-D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT
-D_THREAD_SAFE -I/vol0003/rccs-sdt/a01008/spack-stage/spack-stage
-ncbi-rmblastn-2.11.0-m67m2kvjd6ypgi45utehtqxvyf62qfel/spack-src/c
++/ReleaseMT/inc -I/vol0003/rccs-sdt/a01008/spack-stage/spack-stag
e-ncbi-rmblastn-2.11.0-m67m2kvjd6ypgi45utehtqxvyf62qfel/spack-src/
c++/include -DNCBI_BUILD_SESSION_ID=e842b7c0-6c21-4b0a-bc66-33b35
da63665 /vol0003/rccs-sdt/a01008/spack-stage/spack-stage-ncbi-rmbl
astn-2.11.0-m67m2kvjd6ypgi45utehtqxvyf62qfel/spack-src/c++/src/cor
elib/ncbidll.cpp -o ncbidll.o
1263 2 errors generated.
>> 1264 make[4]: *** [/vol0003/rccs-sdt/a01008/spack-stage/spack-stage-ncb
i-rmblastn-2.11.0-m67m2kvjd6ypgi45utehtqxvyf62qfel/spack-src/c++/R
eleaseMT/build/Makefile.rules:88: ncbi_system.o] Error 1
1265 make[4]: *** Waiting for unfinished jobs....
1266 /vol0003/rccs-sdt/a01008/spack-stage/spack-stage-ncbi-rmblastn-2.1
1.0-m67m2kvjd6ypgi45utehtqxvyf62qfel/spack-src/c++/src/corelib/ncb
idiag.cpp:873:20: warning: 'GetProperties' is deprecated [-Wdeprec
ated-declarations]
1267 value->GetProperties(CDiagContextThreadData::eProp_Get
); /* NCBI_FAKE_WARNING */
1268 ^
1269 /vol0003/rccs-sdt/a01008/spack-stage/spack-stage-ncbi-rmblastn-2.1
1.0-m67m2kvjd6ypgi45utehtqxvyf62qfel/spack-src/c++/include/corelib
/ncbidiag.hpp:1819:5: note: 'GetProperties' has been explicitly ma
rked deprecated here
1270 NCBI_DEPRECATED TProperties* GetProperties(EGetProperties flag
);
...
1286 ^
1287 /vol0003/rccs-sdt/a01008/spack-stage/spack-stage-ncbi-rmblastn-2.1
1.0-m67m2kvjd6ypgi45utehtqxvyf62qfel/spack-src/c++/include/common/
ncbiconf_impl.h:122:56: note: expanded from macro 'NCBI_LEGACY_DEP
RECATED_0'
1288 # define NCBI_LEGACY_DEPRECATED_0 __attribute__((deprecated)
)
1289 ^
1290 2 warnings generated.
1291 make[4]: Leaving directory '/vol0003/rccs-sdt/a01008/spack-stage/s
pack-stage-ncbi-rmblastn-2.11.0-m67m2kvjd6ypgi45utehtqxvyf62qfel/s
pack-src/c++/ReleaseMT/build/corelib'
>> 1292 FAILED: src/corelib/Makefile.corelib.lib
1293 make[4]: Entering directory '/vol0003/rccs-sdt/a01008/spack-stage/
spack-stage-ncbi-rmblastn-2.11.0-m67m2kvjd6ypgi45utehtqxvyf62qfel/
spack-src/c++/ReleaseMT/build/corelib'
1294 make[4]: warning: -jN forced in submake: disabling jobserver mode.
1295 /bin/rm -f libxncbi.a .xncbi.dep .libxncbi.a.stamp
1296 /bin/rm -f /vol0003/rccs-sdt/a01008/spack-stage/spack-stage-ncbi-r
mblastn-2.11.0-m67m2kvjd6ypgi45utehtqxvyf62qfel/spack-src/c++/Rele
aseMT/lib/libxncbi.a /vol0003/rccs-sdt/a01008/spack-stage/spack-st
age-ncbi-rmblastn-2.11.0-m67m2kvjd6ypgi45utehtqxvyf62qfel/spack-sr
c/c++/ReleaseMT/status/.xncbi.dep \
1297 /vol0003/rccs-sdt/a01008/spack-stage/spack-stage-ncbi-rmblastn
-2.11.0-m67m2kvjd6ypgi45utehtqxvyf62qfel/spack-src/c++/ReleaseMT/l
ib/libxncbi-static.a /vol0003/rccs-sdt/a01008/spack-stage/spack-st
age-ncbi-rmblastn-2.11.0-m67m2kvjd6ypgi45utehtqxvyf62qfel/spack-sr
c/c++/ReleaseMT/status/.xncbi-static.dep
1298 make[4]: Leaving directory '/vol0003/rccs-sdt/a01008/spack-stage/s
pack-stage-ncbi-rmblastn-2.11.0-m67m2kvjd6ypgi45utehtqxvyf62qfel/s
pack-src/c++/ReleaseMT/build/corelib'
>> 1299 make[3]: *** [/vol0003/rccs-sdt/a01008/spack-stage/spack-stage-ncb
i-rmblastn-2.11.0-m67m2kvjd6ypgi45utehtqxvyf62qfel/spack-src/c++/s
rc/build-system/Makefile.meta_l:323: all.nonusr] Error 2
1300 make[3]: Leaving directory '/vol0003/rccs-sdt/a01008/spack-stage/s
pack-stage-ncbi-rmblastn-2.11.0-m67m2kvjd6ypgi45utehtqxvyf62qfel/s
pack-src/c++/ReleaseMT/build/corelib'
>> 1301 make[2]: *** [/vol0003/rccs-sdt/a01008/spack-stage/spack-stage-ncb
i-rmblastn-2.11.0-m67m2kvjd6ypgi45utehtqxvyf62qfel/spack-src/c++/s
rc/build-system/Makefile.meta_l:281: all_l.real] Error 2
1302 make[2]: Leaving directory '/vol0003/rccs-sdt/a01008/spack-stage/s
pack-stage-ncbi-rmblastn-2.11.0-m67m2kvjd6ypgi45utehtqxvyf62qfel/s
pack-src/c++/ReleaseMT/build/corelib'
>> 1303 make[1]: *** [/vol0003/rccs-sdt/a01008/spack-stage/spack-stage-ncb
i-rmblastn-2.11.0-m67m2kvjd6ypgi45utehtqxvyf62qfel/spack-src/c++/s
rc/build-system/Makefile.meta_p:129: all_p.real] Error 5
1304 make[1]: Leaving directory '/vol0003/rccs-sdt/a01008/spack-stage/s
pack-stage-ncbi-rmblastn-2.11.0-m67m2kvjd6ypgi45utehtqxvyf62qfel/s
pack-src/c++/ReleaseMT/build'
1305 make: *** [Makefile:24: all] Error 2
See build log for details:
/home/rccs-sdt/a01008/spack-stage/spack-stage-ncbi-rmblastn-2.11.0-m67m2kvjd6ypgi45utehtqxvyf62qfel/spack-build-out.txt
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