List of Open Source Software which can be built on Fugaku

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Spack will be used to manage open source software packages on Fugaku. Fugaku users can easily use pre-installed packages and built packages based on Spack recipes. The following list shows the results of building/compiling packages for aarch64 according to the Spack recipes. Note that the results in this list do not guarantee that each package will work properly. On the other hand, Fujitsu will provide the following packages compiled with Fujitsu compiler on Fugaku as "external" packages, of which Spack can be aware.
  • OpenJDK 11
  • Ruby 2.6.5 or later
  • Python2 2.7.15
  • Python3 3.6.8
  • Numpy 1.14.3
  • SciPy 1.0.0
  • Eclipse IDE 2019-09 R Packages
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orthomcl 2.0.9

Compiler Fujitsu Compiler 4.7.0
Result Dependency Error

Failed Reason

Failed to install dependency package :
------------------------------------------------
[+] /usr (external bzip2-1.0.6-pkyqs6czmr636ktska3fpjek77reodry)
[+] /usr (external freetype-2.9.1-dwvapggh55qh4fl64dvaxm2ht5fauxe5)
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/gnuconfig-2021-08-14-ezyvb3gy7i726n45kwb44a4vxle3if3i
[+] /usr (external gnutls-3.6.14-am5d4tfzb22n5gtcbbngvqmlan67pedv)
[+] /usr (external ncurses-6.1-qbvus6vwvtyxe33hxq4hbpazkrpy6ctb)
[+] /usr (external openssl-1.1.1g-dqzlhh5x3gd54fdshnsmluwmtatw7u6k)
[+] /usr (external libpng-1.6.34-heedxfzojpqtiev7bmm3u2nkfuqztjea)
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/lmdb-0.9.29-q3rg5yqhxwzwtekiv2iposqnxo5q2sos
[+] /usr (external pcre-8.42-ubt55iodsyy4jsmwgjpm7otqpdrrpgt2)
[+] /usr (external perl-5.26.3-cfeod657avcbjzlstrxizeulrdfnqb3r)
[+] /vol0003/rccs-sdt/a01008/opt/python/3.9.9/fj (external python-3.9.9-3wcip6atrybofsb566d7pjqwhl76u4dp)
[+] /usr (external zlib-1.2.11-o3hvygtdcp6vg3bpvsrurq4hgklwtype)
[+] /usr (external m4-1.4.18-zz6lq3qkexluljpiw5yxqyozzhkijvpn)
[+] /usr (external curl-7.61.1-s5ho6wv4jx7d2f2vj27fvdaok5ajslfc)
[+] /usr (external libaio-0.3.112-5ct5zq2q77cuwwsjcmuhkfsmh2fe2nno)
[+] /usr (external libedit-3.1-4g37s3varkd6d47tgjpdwabtxqwda66j)
[+] /usr (external libevent-2.1.8-4hzh2nw7o4xnki7pl6sejvrgsk4eqesg)
[+] /usr (external libxml2-2.9.7-sjfhie7egvrddyaxgsplnop3zfbkkssb)
[+] /usr (external pkgconf-1.4.2-x2r3t6jrikcoqgyvulfa2xm3cgearc2z)
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/lz4-1.9.3-xodk2w4ws7op7b7arnt4mhbqf346xjkp
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/libsodium-1.0.18-ufbjhyel5wmxfvkf3enwuqewx7uqx2cq
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/mcl-14-137-l7inzusbnnz63sevyyqnwmz556idby3h
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/jemalloc-5.2.1-4zpuhftwb74oua3ucchjkecnxd7g2vre
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/libmd-1.0.3-stbabcescctoosfu2nwuv5cekryi4p4g
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/nasm-2.15.05-ondar7fl4cx5br57fs2a4e67d6h2w55p
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/libiconv-1.16-53uyda5tbc4cft2ipchbsft56qsivt74
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/lzo-2.10-ilmm6evbqallg652set6a5oa26hhxcqh
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/cmake-3.21.4-yfmqcorx5ikstkbyr7h7l4u3d3qzjlfx
==> Installing boost-1.77.0-tfuifjz2phadvkgys7c237zb3uj4noi5
==> No binary for boost-1.77.0-tfuifjz2phadvkgys7c237zb3uj4noi5 found: installing from source
==> Warning: using "openssl@1.1.1g" which is a deprecated version
1 out of 1 hunk FAILED -- saving rejects to file tools/build/src/tools/clang-linux.jam.rej
==> Using cached archive: /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/var/spack/cache/_source-cache/archive/fc/fc9f85fc030e233142908241af7a846e60630aa7388de9a5fafb1f3a26840854.tar.bz2
==> Using cached archive: /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/var/spack/cache/_source-cache/archive/93/93f4aad8f88d1437e50d95a2d066390ef3753b99ef5de24f7a46bc083bd6df06
==> Patch /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/var/spack/repos/builtin/packages/boost/fujitsu_version_analysis.patch failed.
==> Error: ProcessError: Command exited with status 1:
'/usr/bin/patch' '-s' '-p' '1' '-i' '/vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/var/spack/repos/builtin/packages/boost/fujitsu_version_analysis.patch' '-d' '.'
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/libbsd-0.11.3-xiejcn74x7lxnfv2gl3k2zsohzdun57v
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/diffutils-3.8-c3z2qrsurl5l57yct4kuz2mxjyjywwgz
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/msgpack-c-3.1.1-hxvj6ohnllpcm525d554tkwan7o75q66
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/libjpeg-turbo-2.1.0-uocr25meow4yzjybzchavleirgndwx4i
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/libzmq-4.3.3-koybfeuaxei43dv32zqorzb2lso6acwi
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/bison-3.8.2-ta2ecl7xyo4uznxun3zvhbitdklgbcck
==> Installing blast-plus-2.12.0-u4il6avl5eumo55ytbkpeml3taglsbiy
==> No binary for blast-plus-2.12.0-u4il6avl5eumo55ytbkpeml3taglsbiy found: installing from source
==> Warning: Skipping build of mariadb-10.4.12-kd2kdc6vy3jegrvaneusqkx4oyhncd52 since boost-1.77.0-tfuifjz2phadvkgys7c237zb3uj4noi5 failed
==> Warning: Skipping build of orthomcl-2.0.9-wfqdmjxnbdsuarurjvq3tki2imgdrnqf since mariadb-10.4.12-kd2kdc6vy3jegrvaneusqkx4oyhncd52 failed
==> Using cached archive: /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/var/spack/cache/_source-cache/archive/fd/fda3c9c9d488cad6c1880a98a236d842bcf3610e3e702af61f7a48cf0a714b88.tar.gz
==> No patches needed for blast-plus
==> blast-plus: Executing phase: 'autoreconf'
==> blast-plus: Executing phase: 'configure'
==> Error: ProcessError: Command exited with status 1:
'/vol0003/rccs-sdt/a01008/spack-stage/spack-stage-blast-plus-2.12.0-u4il6avl5eumo55ytbkpeml3taglsbiy/spack-src/c++/configure' '--prefix=/vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/blast-plus-2.12.0-u4il6avl5eumo55ytbkpeml3taglsbiy' '--with-bin-release' '--without-debug' '--with-mt' '--without-boost' '--with-dll' '--without-static' '--without-static-exe' '--with-jpeg=/vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/libjpeg-turbo-2.1.0-uocr25meow4yzjybzchavleirgndwx4i' '--with-png=/usr' '--with-freetype=/usr' '--without-hdf5' '--with-z=/usr' '--with-bz2=/usr' '--with-lzo=/vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/lzo-2.10-ilmm6evbqallg652set6a5oa26hhxcqh' '--with-gnutls=/usr' '--with-openssl=/usr' '--with-pcre=/usr' '--with-python=/vol0003/rccs-sdt/a01008/opt/python/3.9.9/fj' '--with-perl=/usr'

1 error found in build log:
56 checking whether /vol0003/rccs-sdt/a01008/spack-all-test/env-2022022
5/spack/lib/spack/env/fj/fcc has an option to discard unneeded shar
ed libraries... -Wl,--as-needed
57 checking whether /vol0003/rccs-sdt/a01008/spack-all-test/env-2022022
5/spack/lib/spack/env/fj/fcc has an option to link in whole static
archives... -Wl,--whole-archive
58 checking whether _LIBCPP_VERSION is declared... no
59 checking how to enable C++ '14 features in /vol0003/rccs-sdt/a01008/
spack-all-test/env-20220225/spack/lib/spack/env/fj/case-insensitive/
FCC ... -std=gnu++14
60 checking how to enable C '11 or at least '99 features in /vol0003/rc
cs-sdt/a01008/spack-all-test/env-20220225/spack/lib/spack/env/fj/fcc
... -std=gnu11 -fgnu89-inline
61 checking for dpkg-architecture... no
>> 62 configure: error: Unable to find static libstdc++ requested by --wit
h-bin-release.

See build log for details:
/home/rccs-sdt/a01008/spack-stage/spack-stage-blast-plus-2.12.0-u4il6avl5eumo55ytbkpeml3taglsbiy/spack-build-out.txt

==> Error: orthomcl-2.0.9-wfqdmjxnbdsuarurjvq3tki2imgdrnqf: Package was not installed
==> Error: Installation request failed. Refer to reported errors for failing package(s).
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/krb5-1.19.2-hza6xo7qbg3uyjakyhndbhjsmgfedhfl


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