List of Open Source Software which can be built on Fugaku

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Spack will be used to manage open source software packages on Fugaku. Fugaku users can easily use pre-installed packages and built packages based on Spack recipes. The following list shows the results of building/compiling packages for aarch64 according to the Spack recipes. Note that the results in this list do not guarantee that each package will work properly. On the other hand, Fujitsu will provide the following packages compiled with Fujitsu compiler on Fugaku as "external" packages, of which Spack can be aware.
  • OpenJDK 11
  • Ruby 2.6.5 or later
  • Python2 2.7.15
  • Python3 3.6.8
  • Numpy 1.14.3
  • SciPy 1.0.0
  • Eclipse IDE 2019-09 R Packages
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pbbam 0.18.0

Compiler Fujitsu Compiler 4.7.0
Result Dependency Error

Failed Reason

Failed to install dependency package :
------------------------------------------------
[+] /usr (external bzip2-1.0.6-pkyqs6czmr636ktska3fpjek77reodry)
[+] /usr (external zlib-1.2.11-o3hvygtdcp6vg3bpvsrurq4hgklwtype)
[+] /usr (external ncurses-6.1-qbvus6vwvtyxe33hxq4hbpazkrpy6ctb)
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/gnuconfig-2021-08-14-ezyvb3gy7i726n45kwb44a4vxle3if3i
[+] /usr (external m4-1.4.18-zz6lq3qkexluljpiw5yxqyozzhkijvpn)
[+] /usr (external perl-5.26.3-cfeod657avcbjzlstrxizeulrdfnqb3r)
[+] /usr (external autoconf-2.69-me3qacnq6as2fvkhuiia2ks5udajax3b)
[+] /usr (external automake-1.16.1-gbketv7wv244mk5mkf65hyjxew4yocxo)
[+] /usr (external libtool-2.4.6-snb3wjzerg4q7w57akrhqlg2hfvalawy)
[+] /usr (external pkgconf-1.4.2-x2r3t6jrikcoqgyvulfa2xm3cgearc2z)
[+] /vol0003/rccs-sdt/a01008/opt/python/3.9.9/fj (external python-3.9.9-3wcip6atrybofsb566d7pjqwhl76u4dp)
[+] /usr (external curl-7.61.1-s5ho6wv4jx7d2f2vj27fvdaok5ajslfc)
[+] /usr (external xz-5.2.4-ur7otl6tq7yv3vijsn6wu2nnvot443ku)
==> Installing boost-1.77.0-tfuifjz2phadvkgys7c237zb3uj4noi5
==> No binary for boost-1.77.0-tfuifjz2phadvkgys7c237zb3uj4noi5 found: installing from source
1 out of 1 hunk FAILED -- saving rejects to file tools/build/src/tools/clang-linux.jam.rej
==> Using cached archive: /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/var/spack/cache/_source-cache/archive/fc/fc9f85fc030e233142908241af7a846e60630aa7388de9a5fafb1f3a26840854.tar.bz2
==> Using cached archive: /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/var/spack/cache/_source-cache/archive/93/93f4aad8f88d1437e50d95a2d066390ef3753b99ef5de24f7a46bc083bd6df06
==> Patch /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/var/spack/repos/builtin/packages/boost/fujitsu_version_analysis.patch failed.
==> Error: ProcessError: Command exited with status 1:
'/usr/bin/patch' '-s' '-p' '1' '-i' '/vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/var/spack/repos/builtin/packages/boost/fujitsu_version_analysis.patch' '-d' '.'
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/cmake-3.21.4-vgsk3aw6j4szlnkzjz3u57u7qtoosnkz
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/findutils-4.8.0-hbp3a5kijvggip2hu6cjjjtqnruxmh76
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/sed-4.2.2-iqhhn62dw377ouch35maia5ayjg7j7gv
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/libiconv-1.16-53uyda5tbc4cft2ipchbsft56qsivt74
==> Installing htslib-1.13-fhtjfrpfxso4cg63dmqktjajuysqtgqm
==> No binary for htslib-1.13-fhtjfrpfxso4cg63dmqktjajuysqtgqm found: installing from source
==> Warning: Skipping build of pbbam-0.18.0-ejvxx2kqom76x7bhqbxce557kh6mlbq3 since boost-1.77.0-tfuifjz2phadvkgys7c237zb3uj4noi5 failed
==> Using cached archive: /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/var/spack/cache/_source-cache/archive/f2/f2407df9f97f0bb6b07656579e41a1ca5100464067b6b21bf962a2ea4b0efd65.tar.bz2
==> No patches needed for htslib
==> htslib: Executing phase: 'autoreconf'
==> htslib: Executing phase: 'configure'
==> htslib: Executing phase: 'build'
==> Error: ProcessError: Command exited with status 2:
'make' '-j16' 'V=1'

1 error found in build log:
69 config.status: linking /home/rccs-sdt/a01008/spack-stage/spack-stage
-htslib-1.13-fhtjfrpfxso4cg63dmqktjajuysqtgqm/spack-src/htslib.mk to
htslib.mk
70 config.status: executing mkdir commands
71 ==> htslib: Executing phase: 'build'
72 ==> [2022-03-10-17:40:22.957997] 'make' '-j16' 'V=1'
73 make: Makefile: Too many levels of symbolic links
74 make: stat: Makefile: Too many levels of symbolic links
>> 75 make: *** No rule to make target 'Makefile'. Stop.

See build log for details:
/home/rccs-sdt/a01008/spack-stage/spack-stage-htslib-1.13-fhtjfrpfxso4cg63dmqktjajuysqtgqm/spack-build-out.txt

[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/diffutils-3.8-c3z2qrsurl5l57yct4kuz2mxjyjywwgz
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/bison-3.8.2-ta2ecl7xyo4uznxun3zvhbitdklgbcck
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/flex-2.6.3-pefwrvzgcd6f4nkwmynv7ibzizsip6wk
==> Installing graphviz-2.49.0-prq5eg3ipopjmgogzb7q6no62gnxt5aj
==> No binary for graphviz-2.49.0-prq5eg3ipopjmgogzb7q6no62gnxt5aj found: installing from source
==> Using cached archive: /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/var/spack/cache/_source-cache/archive/b1/b129555743bb9bfb7b63c55825da51763b2f1ee7c0eaa6234a42a61a3aff6cc9.tar.bz2
==> No patches needed for graphviz
==> graphviz: Executing phase: 'autoreconf'
==> Error: ProcessError: Command exited with status 1:
'/usr/bin/bash' './autogen.sh' 'NOCONFIG'

2 warnings found in build log:
>> 5 Warning: build not started in a Git clone, or Git is not installed: s
etting version date to 0.
>> 6 Warning: build not started in a Git clone, or Git is not installed: s
etting version date to 0.
7 autoreconf: Entering directory `.'
8 autoreconf: configure.ac: not using Gettext
9 autoreconf: running: aclocal --force -I m4
10 autoreconf: configure.ac: tracing
11 autoreconf: configure.ac: subdirectory libltdl not present
12 autoreconf: running: libtoolize --copy --force --ltdl

See build log for details:
/home/rccs-sdt/a01008/spack-stage/spack-stage-graphviz-2.49.0-prq5eg3ipopjmgogzb7q6no62gnxt5aj/spack-build-out.txt

==> Warning: Skipping build of doxygen-1.9.2-g7ttmtgbx7z4o66n45ajkiphd7qvzs44 since graphviz-2.49.0-prq5eg3ipopjmgogzb7q6no62gnxt5aj failed
==> Error: pbbam-0.18.0-ejvxx2kqom76x7bhqbxce557kh6mlbq3: Package was not installed
==> Error: Installation request failed. Refer to reported errors for failing package(s).


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