List of Open Source Software which can be built on Fugaku

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Spack will be used to manage open source software packages on Fugaku. Fugaku users can easily use pre-installed packages and built packages based on Spack recipes. The following list shows the results of building/compiling packages for aarch64 according to the Spack recipes. Note that the results in this list do not guarantee that each package will work properly. On the other hand, Fujitsu will provide the following packages compiled with Fujitsu compiler on Fugaku as "external" packages, of which Spack can be aware.
  • OpenJDK 11
  • Ruby 2.6.5 or later
  • Python2 2.7.15
  • Python3 3.6.8
  • Numpy 1.14.3
  • SciPy 1.0.0
  • Eclipse IDE 2019-09 R Packages
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pmemkv 1.4

Compiler Fujitsu Compiler 4.7.0
Result Dependency Error

Failed Reason

Failed to install dependency package :
------------------------------------------------
badblocks.c
871 ../../src/../utils/check-os.sh ../../src/../utils/os-banned ../no
ndebug/libpmemobj/alloc.o ../../src/../src/core/alloc.c
872 skip ../nondebug/libpmemblk/os_thread_posix.o
873 /usr/bin/ld: ../debug/libpmem2/mcsafe_ops_posix.o(.debug_info+0x19
e): R_AARCH64_ABS64 used with TLS symbol Mcsafe_jmp
>> 874 clang-7: error: linker command failed with exit code 1 (use -v to
see invocation)
>> 875 make[2]: *** [../Makefile.inc:246: ../debug/libpmem2/../libpmem2.s
o.1.0.0] Error 1
876 make[2]: Leaving directory '/vol0003/rccs-sdt/a01008/spack-stage/s
pack-stage-pmdk-master-uqz3niatbj63mzesvxfjetetav7lklbw/spack-src/
src/libpmem2'
877 make[1]: *** [Makefile:147: libpmem2] Error 2
878 make[1]: *** Waiting for unfinished jobs....
879 /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/lib/spa
ck/env/fj/fcc -MD -c -o ../nondebug/libpmemobj/out.o -std=gnu99 -W
all -Werror -Wmissing-prototypes -Wpointer-arith -Wsign-conversion
-Wsign-compare -Wunused-parameter -Wconversion -Wunused-macros -W
missing-field-initializers -Wunreachable-code-return -Wmissing-var
iable-declarations -Wfloat-equal -Wswitch-default -O2 -U_FORTIFY_S
OURCE -D_FORTIFY_SOURCE=2 -std=gnu99 -fno-common -pthread -DSRCVER
SION=\"1.9.2+git.c36ac4e\" -fno-lto -Wno-error -DUSE_LIBDL -D_PME
MOBJ_INTRNL -I../include -I../common/ -I../core/ -fPIC ../../sr
c/../src/core/out.c
880 /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/lib/spa
ck/env/fj/fcc -MD -c -o ../nondebug/libpmemblk/ctl.o -std=gnu99 -W
all -Werror -Wmissing-prototypes -Wpointer-arith -Wsign-conversion
-Wsign-compare -Wunused-parameter -Wconversion -Wunused-macros -W
missing-field-initializers -Wunreachable-code-return -Wmissing-var
iable-declarations -Wfloat-equal -Wswitch-default -O2 -U_FORTIFY_S
OURCE -D_FORTIFY_SOURCE=2 -std=gnu99 -fno-common -pthread -DSRCVER
SION=\"1.9.2+git.c36ac4e\" -fno-lto -Wno-error -I../include -I..
/common/ -I../core/ -fPIC ../../src/../src/common/ctl.c
881 /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/lib/spa
ck/env/fj/fcc -MD -c -o ../nondebug/libpmemobj/ravl.o -std=gnu99 -
Wall -Werror -Wmissing-prototypes -Wpointer-arith -Wsign-conversio
n -Wsign-compare -Wunused-parameter -Wconversion -Wunused-macros -
Wmissing-field-initializers -Wunreachable-code-return -Wmissing-va
riable-declarations -Wfloat-equal -Wswitch-default -O2 -U_FORTIFY_
SOURCE -D_FORTIFY_SOURCE=2 -std=gnu99 -fno-common -pthread -DSRCVE
RSION=\"1.9.2+git.c36ac4e\" -fno-lto -Wno-error -DUSE_LIBDL -D_PM
EMOBJ_INTRNL -I../include -I../common/ -I../core/ -fPIC ../../s
rc/../src/core/ravl.c

...

1838 a - ../debug/libpmemobj/libpmemobj_all.o
1839 /usr/bin/ld: ../debug/libpmemobj/lane.o(.debug_info+0x5e): R_AARCH
64_ABS64 used with TLS symbol Lane_info_ht
1840 /usr/bin/ld: ../debug/libpmemobj/lane.o(.debug_info+0x7e): R_AARCH
64_ABS64 used with TLS symbol Lane_info_records
1841 /usr/bin/ld: ../debug/libpmemobj/lane.o(.debug_info+0x11b): R_AARC
H64_ABS64 used with TLS symbol Lane_info_cache
1842 /usr/bin/ld: ../debug/libpmemobj/obj.o(.debug_info+0xe6): R_AARCH6
4_ABS64 used with TLS symbol _pobj_cached_pool
1843 /usr/bin/ld: ../debug/libpmemobj/tx.o(.debug_info+0x50): R_AARCH64
_ABS64 used with TLS symbol get_tx.tx
>> 1844 clang-7: error: linker command failed with exit code 1 (use -v to
see invocation)
>> 1845 make[2]: *** [../Makefile.inc:246: ../debug/libpmemobj/../libpmemo
bj.so.1.0.0] Error 1
1846 make[2]: Leaving directory '/vol0003/rccs-sdt/a01008/spack-stage/s
pack-stage-pmdk-master-uqz3niatbj63mzesvxfjetetav7lklbw/spack-src/
src/libpmemobj'
1847 make[1]: *** [Makefile:147: libpmemobj] Error 2
1848 make[1]: Leaving directory '/vol0003/rccs-sdt/a01008/spack-stage/s
pack-stage-pmdk-master-uqz3niatbj63mzesvxfjetetav7lklbw/spack-src/
src'
1849 make: *** [Makefile:58: all] Error 2

See build log for details:
/home/rccs-sdt/a01008/spack-stage/spack-stage-pmdk-master-uqz3niatbj63mzesvxfjetetav7lklbw/spack-build-out.txt

[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/cmake-3.21.4-vgsk3aw6j4szlnkzjz3u57u7qtoosnkz
==> Installing memkind-1.10.1-4xg42j6g26zryejqqjpseymemi5urrdf
==> No binary for memkind-1.10.1-4xg42j6g26zryejqqjpseymemi5urrdf found: installing from source
==> Warning: Skipping build of libpmemobj-cpp-1.12-x4mou6kmi7bpvcaovnxy7dib66c2iyxq since pmdk-master-uqz3niatbj63mzesvxfjetetav7lklbw failed
==> Warning: Skipping build of pmemkv-1.4-fuadvcoc4coiu6it33e44rpp2wcs5jnv since libpmemobj-cpp-1.12-x4mou6kmi7bpvcaovnxy7dib66c2iyxq failed
==> Using cached archive: /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/var/spack/cache/_source-cache/archive/c2/c203615d964a0bb151756ad8a5c9565391ee77d79c1f8b59d2ea8ff87989b294.tar.gz
==> Ran patch() for memkind
==> memkind: Executing phase: 'build_jemalloc'
==> memkind: Executing phase: 'autoreconf'
==> memkind: Executing phase: 'configure'
==> memkind: Executing phase: 'build'
==> Error: ProcessError: Command exited with status 2:
'make' '-j16' 'V=1'

7 errors found in build log:
6 libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'm4'.
7 libtoolize: copying file 'm4/libtool.m4'
8 libtoolize: copying file 'm4/ltoptions.m4'
9 libtoolize: copying file 'm4/ltsugar.m4'
10 libtoolize: copying file 'm4/ltversion.m4'
11 libtoolize: copying file 'm4/lt~obsolete.m4'
>> 12 configure.ac:18: installing './ar-lib'
>> 13 configure.ac:18: installing './compile'
>> 14 configure.ac:23: installing './config.guess'
>> 15 configure.ac:23: installing './config.sub'
>> 16 configure.ac:14: installing './install-sh'
>> 17 configure.ac:14: installing './missing'
18 Makefile.am: installing './depcomp'
19 parallel-tests: installing './test-driver'
20 ==> memkind: Executing phase: 'configure'
21 ==> [2022-03-10-20:24:43.466355] './configure' '--prefix=/vol0003/
rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-
rhel8-a64fx/fj-4.7.0/memkind-1.10.1-4xg42j6g26zryejqqjpseymemi5urr
df'
22 checking for a BSD-compatible install... /usr/bin/install -c
23 checking whether build environment is sane... yes

...

1022 ar crus lib/libjemalloc.a src/jemalloc.o src/arena.o src/backgroun
d_thread.o src/base.o src/bin.o src/bitmap.o src/ckh.o src/ctl.o s
rc/div.o src/extent.o src/extent_dss.o src/extent_mmap.o src/hash.
o src/hook.o src/large.o src/log.o src/malloc_io.o src/mutex.o src
/mutex_pool.o src/nstime.o src/pages.o src/prng.o src/prof.o src/r
tree.o src/safety_check.o src/stats.o src/sc.o src/sz.o src/tcache
.o src/test_hooks.o src/ticker.o src/tsd.o src/witness.o src/jemal
loc_cpp.o
1023 make[1]: Leaving directory '/vol0003/rccs-sdt/a01008/spack-stage/s
pack-stage-memkind-1.10.1-4xg42j6g26zryejqqjpseymemi5urrdf/spack-s
rc/jemalloc'
1024 depbase=`echo src/hbwmalloc.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'
`;\
1025 /bin/sh ./libtool --tag=CC --mode=compile /vol0003/rccs-sdt/a01
008/spack-all-test/env-20220225/spack/lib/spack/env/fj/fcc -DHAVE_
CONFIG_H -I. -I./include -I./jemalloc/include -Itest/gtest_fused
-DMEMKIND_DEPRECATED\(x\)=x -fvisibility=hidden -Wall -Werror -D_
GNU_SOURCE -DJE_PREFIX=jemk_ -g -O2 -pthread -fstack-protector -D_
FORTIFY_SOURCE=2 -MT src/hbwmalloc.lo -MD -MP -MF $depbase.Tpo -c
-o src/hbwmalloc.lo src/hbwmalloc.c &&\
1026 mv -f $depbase.Tpo $depbase.Plo
1027 libtool: compile: /vol0003/rccs-sdt/a01008/spack-all-test/env-202
20225/spack/lib/spack/env/fj/fcc -DHAVE_CONFIG_H -I. -I./include -
I./jemalloc/include -Itest/gtest_fused "-DMEMKIND_DEPRECATED(x)=x"
-fvisibility=hidden -Wall -Werror -D_GNU_SOURCE -DJE_PREFIX=jemk_
-g -O2 -pthread -fstack-protector -D_FORTIFY_SOURCE=2 -MT src/hbw
malloc.lo -MD -MP -MF src/.deps/hbwmalloc.Tpo -c src/hbwmalloc.c
>> 1028 clang-7: error: unknown argument: '-fstack-protector'
1029 make: *** [Makefile:2809: src/hbwmalloc.lo] Error 1

See build log for details:
/home/rccs-sdt/a01008/spack-stage/spack-stage-memkind-1.10.1-4xg42j6g26zryejqqjpseymemi5urrdf/spack-build-out.txt

==> Error: pmemkv-1.4-fuadvcoc4coiu6it33e44rpp2wcs5jnv: Package was not installed
==> Error: Installation request failed. Refer to reported errors for failing package(s).
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/intel-tbb-2020.3-7babpk2kuh5ydo4vmbilzrnkzcz4pxdq
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/rapidjson-1.1.0-5efxjas4h3vyh3bc4lknhmdtp2uie554


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