List of Open Source Software which can be built on Fugaku

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Spack will be used to manage open source software packages on Fugaku. Fugaku users can easily use pre-installed packages and built packages based on Spack recipes. The following list shows the results of building/compiling packages for aarch64 according to the Spack recipes. Note that the results in this list do not guarantee that each package will work properly. On the other hand, Fujitsu will provide the following packages compiled with Fujitsu compiler on Fugaku as "external" packages, of which Spack can be aware.
  • OpenJDK 11
  • Ruby 2.6.5 or later
  • Python2 2.7.15
  • Python3 3.6.8
  • Numpy 1.14.3
  • SciPy 1.0.0
  • Eclipse IDE 2019-09 R Packages
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portcullis 1.1.2

Compiler Fujitsu Compiler 4.7.0
Result Dependency Error

Failed Reason

Failed to install dependency package :
------------------------------------------------
[+] /usr (external autoconf-2.69-me3qacnq6as2fvkhuiia2ks5udajax3b)
[+] /usr (external automake-1.16.1-gbketv7wv244mk5mkf65hyjxew4yocxo)
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/gnuconfig-2021-08-14-ezyvb3gy7i726n45kwb44a4vxle3if3i
[+] /usr (external libtool-2.4.6-snb3wjzerg4q7w57akrhqlg2hfvalawy)
[+] /usr (external m4-1.4.18-zz6lq3qkexluljpiw5yxqyozzhkijvpn)
[+] /opt/FJSVxtclanga/tcsds-latest (external fujitsu-ssl2-head-qa7iyj5emttingfmlg3424h3vekiviw3)
[+] /vol0003/rccs-sdt/a01008/opt/python/3.9.9/fj (external python-3.9.9-3wcip6atrybofsb566d7pjqwhl76u4dp)
[+] /usr (external bzip2-1.0.6-pkyqs6czmr636ktska3fpjek77reodry)
[+] /usr (external curl-7.61.1-s5ho6wv4jx7d2f2vj27fvdaok5ajslfc)
[+] /usr (external xz-5.2.4-ur7otl6tq7yv3vijsn6wu2nnvot443ku)
[+] /usr (external zlib-1.2.11-o3hvygtdcp6vg3bpvsrurq4hgklwtype)
[+] /usr (external ncurses-6.1-qbvus6vwvtyxe33hxq4hbpazkrpy6ctb)
[+] /usr (external perl-5.26.3-cfeod657avcbjzlstrxizeulrdfnqb3r)
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/py-setuptools-58.2.0-nwtt7d5cczfaezzecmrcr4swo63tvrg2
==> Installing htslib-1.13-fhtjfrpfxso4cg63dmqktjajuysqtgqm
==> No binary for htslib-1.13-fhtjfrpfxso4cg63dmqktjajuysqtgqm found: installing from source
==> Using cached archive: /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/var/spack/cache/_source-cache/archive/f2/f2407df9f97f0bb6b07656579e41a1ca5100464067b6b21bf962a2ea4b0efd65.tar.bz2
==> No patches needed for htslib
==> htslib: Executing phase: 'autoreconf'
==> htslib: Executing phase: 'configure'
==> htslib: Executing phase: 'build'
==> Error: ProcessError: Command exited with status 2:
'make' '-j16' 'V=1'

1 error found in build log:
69 config.status: linking /home/rccs-sdt/a01008/spack-stage/spack-stage
-htslib-1.13-fhtjfrpfxso4cg63dmqktjajuysqtgqm/spack-src/htslib.mk to
htslib.mk
70 config.status: executing mkdir commands
71 ==> htslib: Executing phase: 'build'
72 ==> [2022-03-10-20:43:19.119644] 'make' '-j16' 'V=1'
73 make: Makefile: Too many levels of symbolic links
74 make: stat: Makefile: Too many levels of symbolic links
>> 75 make: *** No rule to make target 'Makefile'. Stop.

See build log for details:
/home/rccs-sdt/a01008/spack-stage/spack-stage-htslib-1.13-fhtjfrpfxso4cg63dmqktjajuysqtgqm/spack-build-out.txt

[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/py-six-1.16.0-7wy35e2zjrxyks3it4qdao6wlgugjsjj
==> Installing py-sphinxcontrib-websupport-1.1.2-pemae7gbhbaz3czgdqlyixkgilescybg
==> No binary for py-sphinxcontrib-websupport-1.1.2-pemae7gbhbaz3czgdqlyixkgilescybg found: installing from source
==> Warning: Skipping build of samtools-1.13-i3dfs62qbg4cwtazkdeanomc6nejydbk since htslib-1.13-fhtjfrpfxso4cg63dmqktjajuysqtgqm failed
==> Warning: Skipping build of portcullis-1.1.2-mjwzjgepriii7rdl56f5ne2qp5gemcli since samtools-1.13-i3dfs62qbg4cwtazkdeanomc6nejydbk failed
==> Fetching https://mirror.spack.io/_source-cache/archive/15/1501befb0fdf1d1c29a800fdbf4ef5dc5369377300ddbdd16d2cd40e54c6eefc.tar.gz
==> No patches needed for py-sphinxcontrib-websupport
==> py-sphinxcontrib-websupport: Executing phase: 'build'
==> py-sphinxcontrib-websupport: Executing phase: 'install'
==> py-sphinxcontrib-websupport: Successfully installed py-sphinxcontrib-websupport-1.1.2-pemae7gbhbaz3czgdqlyixkgilescybg
Fetch: 0.98s. Build: 10.63s. Total: 11.61s.
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/py-sphinxcontrib-websupport-1.1.2-pemae7gbhbaz3czgdqlyixkgilescybg
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/py-chardet-4.0.0-sthonkzen5xvsgvhvpmmd5454itn22wc
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/py-imagesize-1.1.0-3mjqdm5vtyqvtrcfivzzvvyinwmauefd
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/py-cython-0.29.24-rmuycsh3hdsfbp3ffdahdadzgeju5kfs
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/py-pyparsing-2.4.7-svkdl2gu6r74fpeovo2dzkur2gjc52i7
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/py-certifi-2021.10.8-unokuqtcoh3uja5zbsqodlngvhkafqpu
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/py-pygments-2.10.0-viid7c2tudly6pbqgvbhbjc4fsdujhzw
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/py-urllib3-1.26.6-whpygnempsru6vi3pn33gyuerrd6zjd5
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/py-docutils-0.18-shpkbj7jzcdz4eerggp26rk4c2xtwq4y
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/py-alabaster-0.7.12-7qtc5oaqbr4juywcuhn24j4auulfpkuz
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/py-pytz-2021.1-kacp2cftqbyzqvegcf4iswuwo26slg6y
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/py-snowballstemmer-2.0.0-2zrqyarao2k5oc3stegodmh3a54mmchh
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/py-markupsafe-2.0.1-4td6e2neiiuadlhwguzdam5injfbrhqz
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/py-pip-21.1.2-lraxbrobmv3m3awsrfqfvxwklwpu52rf
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/py-idna-2.9-azjim3f2ye5v6yi4xu4g44jxbg42rtcf
==> Installing py-numpy-1.21.3-eopspnavmocj2cziofoszo4vonyhfseh
==> No binary for py-numpy-1.21.3-eopspnavmocj2cziofoszo4vonyhfseh found: installing from source
==> Using cached archive: /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/var/spack/cache/_source-cache/archive/63/63571bb7897a584ca3249c86dd01c10bcb5fe4296e3568b2e9c1a55356b6410e.zip
==> Applied patch /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/var/spack/repos/builtin/packages/py-numpy/check_executables.patch
==> py-numpy: Executing phase: 'build'
==> Error: ProcessError: Command exited with status 1:
'/vol0003/rccs-sdt/a01008/opt/python/3.9.9/fj/bin/python3.9' '-s' 'setup.py' '--no-user-cfg' 'build'
See build log for details:
/home/rccs-sdt/a01008/spack-stage/spack-stage-py-numpy-1.21.3-eopspnavmocj2cziofoszo4vonyhfseh/spack-build-out.txt

[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/py-packaging-21.0-s6cid7alqa7tw3xxefl7ekdcot2fjcgn
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/py-babel-2.7.0-ogbnrgpgrsoqsedbypvd2tv74xrx23qk
==> Installing py-jinja2-2.11.3-ypzqkdlfrwq74hczjlfxlffnn4givnts
==> No binary for py-jinja2-2.11.3-ypzqkdlfrwq74hczjlfxlffnn4givnts found: installing from source
==> Warning: Skipping build of py-bottleneck-1.3.2-ybqyr4x7357j4aaukdocygyjeinmjwna since py-numpy-1.21.3-eopspnavmocj2cziofoszo4vonyhfseh failed
==> Warning: Skipping build of py-pandas-1.3.4-74viuy5e2dws2uy5s4q2chyud2jrh23k since py-bottleneck-1.3.2-ybqyr4x7357j4aaukdocygyjeinmjwna failed
==> Warning: Skipping build of py-numexpr-2.7.3-nx7efwtr3746vziof2zbflf23ik2i2za since py-numpy-1.21.3-eopspnavmocj2cziofoszo4vonyhfseh failed
==> Fetching https://mirror.spack.io/_source-cache/archive/a6/a6d58433de0ae800347cab1fa3043cebbabe8baa9d29e668f1c768cb87a333c6.tar.gz
==> No patches needed for py-jinja2
==> py-jinja2: Executing phase: 'build'
==> py-jinja2: Executing phase: 'install'
==> py-jinja2: Successfully installed py-jinja2-2.11.3-ypzqkdlfrwq74hczjlfxlffnn4givnts
Fetch: 0.92s. Build: 8.31s. Total: 9.23s.
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/py-jinja2-2.11.3-ypzqkdlfrwq74hczjlfxlffnn4givnts
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/py-tomli-1.2.1-qxysj56clo6kspouoq4msjtem3n3lijr
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/py-requests-2.25.1-ndtgawukeu3njk4c2kenikaqiadhbqur
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/py-setuptools-scm-6.3.2-eobdhwxld3ay3ywvassepocvioqlmoyt
==> Installing py-sphinx-1.4.5-oug6rrvt6udx3jdib2kaxcewi5u2ycfz
==> No binary for py-sphinx-1.4.5-oug6rrvt6udx3jdib2kaxcewi5u2ycfz found: installing from source
==> Fetching https://mirror.spack.io/_source-cache/archive/c5/c5df65d97a58365cbf4ea10212186a9a45d89c61ed2c071de6090cdf9ddb4028.tar.gz
==> No patches needed for py-sphinx
==> py-sphinx: Executing phase: 'build'
==> py-sphinx: Executing phase: 'install'
==> py-sphinx: Successfully installed py-sphinx-1.4.5-oug6rrvt6udx3jdib2kaxcewi5u2ycfz
Fetch: 1.36s. Build: 1m 17.18s. Total: 1m 18.55s.
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/py-sphinx-1.4.5-oug6rrvt6udx3jdib2kaxcewi5u2ycfz
==> Error: portcullis-1.1.2-mjwzjgepriii7rdl56f5ne2qp5gemcli: Package was not installed
==> Error: Installation request failed. Refer to reported errors for failing package(s).
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/py-python-dateutil-2.8.2-47xpbgpsge4zr2jarbvsyc5uofvh3srv


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