List of Open Source Software which can be built on Fugaku

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Spack will be used to manage open source software packages on Fugaku. Fugaku users can easily use pre-installed packages and built packages based on Spack recipes. The following list shows the results of building/compiling packages for aarch64 according to the Spack recipes. Note that the results in this list do not guarantee that each package will work properly. On the other hand, Fujitsu will provide the following packages compiled with Fujitsu compiler on Fugaku as "external" packages, of which Spack can be aware.
  • OpenJDK 11
  • Ruby 2.6.5 or later
  • Python2 2.7.15
  • Python3 3.6.8
  • Numpy 1.14.3
  • SciPy 1.0.0
  • Eclipse IDE 2019-09 R Packages
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py-atropos 1.1.22

Compiler Fujitsu Compiler 4.7.0
Result Dependency Error

Failed Reason

Failed to install dependency package :
------------------------------------------------
[+] /vol0003/rccs-sdt/a01008/opt/python/3.9.9/fj (external python-3.9.9-3wcip6atrybofsb566d7pjqwhl76u4dp)
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/py-setuptools-58.2.0-nwtt7d5cczfaezzecmrcr4swo63tvrg2
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/py-cython-0.29.24-rmuycsh3hdsfbp3ffdahdadzgeju5kfs
==> Installing py-atropos-1.1.22-rrzvq3glvw2wuxhld4r2ary6lanssscg
==> No binary for py-atropos-1.1.22-rrzvq3glvw2wuxhld4r2ary6lanssscg found: installing from source
==> Fetching https://mirror.spack.io/_source-cache/archive/05/05e40cb9337421479c692e1154b962fbf811d7939b72c197a024929b7ae88b78.tar.gz
==> No patches needed for py-atropos
==> py-atropos: Executing phase: 'build'
==> Error: ProcessError: Command exited with status 1:
'/vol0003/rccs-sdt/a01008/opt/python/3.9.9/fj/bin/python3.9' '-s' 'setup.py' '--no-user-cfg' 'build'

7 errors found in build log:
>> 3 /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spac
k/linux-rhel8-a64fx/fj-4.7.0/py-setuptools-58.2.0-nwtt7d5cczfaezzec
mrcr4swo63tvrg2/lib/python3.9/site-packages/setuptools/dist.py:717:
UserWarning: Usage of dash-separated 'description-file' will not b
e supported in future versions. Please use the underscore name 'des
cription_file' instead
4 warnings.warn(
5 running build
6 running build_py
7 creating build
8 creating build/lib.linux-aarch64-3.9
9 creating build/lib.linux-aarch64-3.9/atropos

...

72 running build_ext
73 building 'atropos.align._align' extension
74 creating build/temp.linux-aarch64-3.9
75 creating build/temp.linux-aarch64-3.9/atropos
76 creating build/temp.linux-aarch64-3.9/atropos/align
77 /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/lib/spac
k/env/fj/fcc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv
-O3 -Wall -fPIC -I/vol0003/rccs-sdt/a01008/opt/python/3.9.9/fj/incl
ude/python3.9 -c atropos/align/_align.c -o build/temp.linux-aarch64
-3.9/atropos/align/_align.o
>> 78 atropos/align/_align.c:8466:46: error: no member named 'tp_print' i
n 'struct _typeobject'
79 __pyx_type_7atropos_5align_6_align_Aligner.tp_print = 0;
80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^
>> 81 atropos/align/_align.c:8474:51: error: no member named 'tp_print' i
n 'struct _typeobject'
82 __pyx_type_7atropos_5align_6_align_MultiAligner.tp_print = 0;
83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^
>> 84 atropos/align/_align.c:8482:66: error: no member named 'tp_print' i
n 'struct _typeobject'
85 __pyx_type_7atropos_5align_6_align___pyx_scope_struct____str__.tp
_print = 0;
86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^
>> 87 atropos/align/_align.c:8488:67: error: no member named 'tp_print' i
n 'struct _typeobject'
88 __pyx_type_7atropos_5align_6_align___pyx_scope_struct_1_genexpr.t
p_print = 0;
89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^
>> 90 atropos/align/_align.c:8494:67: error: no member named 'tp_print' i
n 'struct _typeobject'
91 __pyx_type_7atropos_5align_6_align___pyx_scope_struct_2_genexpr.t
p_print = 0;
92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^
93 atropos/align/_align.c:9430:22: warning: '_PyUnicode_get_wstr_lengt
h' is deprecated [-Wdeprecated-declarations]
94 (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SI
ZE(key)) ? 1 :
95 ^
96 /vol0003/rccs-sdt/a01008/opt/python/3.9.9/fj/include/python3.9/cpyt
hon/unicodeobject.h:261:7: note: expanded from macro 'PyUnicode_GET
_SIZE'

...

256 Py_DEPRECATED(3.3)
257 ^
258 /vol0003/rccs-sdt/a01008/opt/python/3.9.9/fj/include/python3.9/pypo
rt.h:508:54: note: expanded from macro 'Py_DEPRECATED'
259 #define Py_DEPRECATED(VERSION_UNUSED) __attribute__((__deprecated__
))
260 ^
261 12 warnings and 5 errors generated.
>> 262 error: command '/vol0003/rccs-sdt/a01008/spack-all-test/env-2022022
5/spack/lib/spack/env/fj/fcc' failed with exit code 1

See build log for details:
/home/rccs-sdt/a01008/spack-stage/spack-stage-py-atropos-1.1.22-rrzvq3glvw2wuxhld4r2ary6lanssscg/spack-build-out.txt


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