List of Open Source Software which can be built on Fugaku

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Spack will be used to manage open source software packages on Fugaku. Fugaku users can easily use pre-installed packages and built packages based on Spack recipes. The following list shows the results of building/compiling packages for aarch64 according to the Spack recipes. Note that the results in this list do not guarantee that each package will work properly. On the other hand, Fujitsu will provide the following packages compiled with Fujitsu compiler on Fugaku as "external" packages, of which Spack can be aware.
  • OpenJDK 11
  • Ruby 2.6.5 or later
  • Python2 2.7.15
  • Python3 3.6.8
  • Numpy 1.14.3
  • SciPy 1.0.0
  • Eclipse IDE 2019-09 R Packages
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r-annotationhub 2.22.0

Compiler Fujitsu Compiler 4.7.0
Result Dependency Error

Failed Reason

Failed to install dependency package :
------------------------------------------------
[+] /usr (external bzip2-1.0.6-pkyqs6czmr636ktska3fpjek77reodry)
[+] /usr (external curl-7.61.1-s5ho6wv4jx7d2f2vj27fvdaok5ajslfc)
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/gnuconfig-2021-08-14-ezyvb3gy7i726n45kwb44a4vxle3if3i
[+] /vol0003/rccs-sdt/a01008/opt/python/3.9.9/fj (external python-3.9.9-3wcip6atrybofsb566d7pjqwhl76u4dp)
[+] /usr (external ncurses-6.1-qbvus6vwvtyxe33hxq4hbpazkrpy6ctb)
==> Installing openjdk-11.0.12_7-a75f25zctkd65qs6k6k3deyegg5s7c6o
==> No binary for openjdk-11.0.12_7-a75f25zctkd65qs6k6k3deyegg5s7c6o found: installing from source
==> Warning: using "openssl@1.1.1g" which is a deprecated version
==> Using cached archive: /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/var/spack/cache/_source-cache/archive/10/105bdc12fcd54c551e8e8ac96bc82412467244c32063689c41cee29ceb7452a2.tar.gz
==> No patches needed for openjdk
==> openjdk: Executing phase: 'install'
==> Error: PermissionError: [Errno 13] Permission denied: '/vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/openjdk-11.0.12_7-a75f25zctkd65qs6k6k3deyegg5s7c6o/legal/jdk.crypto.ec/ecc.md'

/vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/var/spack/repos/builtin/packages/openjdk/package.py:144, in install:
142 def install(self, spec, prefix):
143 top_dir = 'Contents/Home/' if platform.system() == "Darwin" else '.'
>> 144 install_tree(top_dir, prefix)

See build log for details:
/home/rccs-sdt/a01008/spack-stage/spack-stage-openjdk-11.0.12_7-a75f25zctkd65qs6k6k3deyegg5s7c6o/spack-build-out.txt

==> Warning: Skipping build of r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd since openjdk-11.0.12_7-a75f25zctkd65qs6k6k3deyegg5s7c6o failed
==> Warning: Skipping build of r-tidyselect-1.1.1-5e66d5aceimfjcz3uggvebkhbc4nflnj since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-dbplyr-2.1.1-m5a4s6igmtbvgjdzd3livsa3hlslncod since r-tidyselect-1.1.1-5e66d5aceimfjcz3uggvebkhbc4nflnj failed
==> Warning: Skipping build of r-biocfilecache-1.14.0-ldehkqnxgqxgiryu2mkjwsjhsqi5funl since r-dbplyr-2.1.1-m5a4s6igmtbvgjdzd3livsa3hlslncod failed
==> Warning: Skipping build of r-annotationhub-2.22.0-uiqob6ghipj57cbwegsqjbfgbfrsjb5k since r-biocfilecache-1.14.0-ldehkqnxgqxgiryu2mkjwsjhsqi5funl failed
==> Warning: Skipping build of r-dplyr-1.0.7-amtbxfyqctwavqw62445ctoxrg7xkaia since r-tidyselect-1.1.1-5e66d5aceimfjcz3uggvebkhbc4nflnj failed
==> Warning: Skipping build of r-lifecycle-1.0.1-nkdn4avwjnsdmwrqt6crzfyjhmmo5amb since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-pillar-1.6.4-6ef4fa2pvtclffxm4rr7rnt6i6io73ya since r-lifecycle-1.0.1-nkdn4avwjnsdmwrqt6crzfyjhmmo5amb failed
==> Warning: Skipping build of r-tibble-3.1.5-ejh4hbsgen5fox5ikhnyb526x2bstx6d since r-pillar-1.6.4-6ef4fa2pvtclffxm4rr7rnt6i6io73ya failed
==> Warning: Skipping build of r-crayon-1.4.1-oebib5duroblw7btkhfazy73odikeipe since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-shiny-1.5.0-vshmqzy7gzarrhaocg27g7e4nbx2rbci since r-crayon-1.4.1-oebib5duroblw7btkhfazy73odikeipe failed
==> Warning: Skipping build of r-interactivedisplaybase-1.28.0-buw6e7y6yj6n56waju4smsbhoxrp5i72 since r-shiny-1.5.0-vshmqzy7gzarrhaocg27g7e4nbx2rbci failed
==> Warning: Skipping build of r-curl-4.3.2-xfku7crkji62d4sabdd3vnywdu2qd77k since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-httr-1.4.2-tsw2c7xsdgd747t2f5lp44nhmr6ehcnp since r-curl-4.3.2-xfku7crkji62d4sabdd3vnywdu2qd77k failed
==> Warning: Skipping build of r-bh-1.72.0-3-il7lwc5yielc6znge3j7mjx6ccvfc6m7 since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-httpuv-1.5.5-zew57pmrg5i5g4suxzhi544n4jhbi64w since r-bh-1.72.0-3-il7lwc5yielc6znge3j7mjx6ccvfc6m7 failed
==> Warning: Skipping build of r-rsqlite-2.2.2-3cd4kmq6xzlyhcb4b3ugib2arse26ccl since r-bh-1.72.0-3-il7lwc5yielc6znge3j7mjx6ccvfc6m7 failed
==> Warning: Skipping build of r-annotationdbi-1.52.0-4avxuhzftme4hzw7qqa5z3olfe4yzigo since r-rsqlite-2.2.2-3cd4kmq6xzlyhcb4b3ugib2arse26ccl failed
==> Warning: Skipping build of r-later-1.1.0.1-cvr5ppogpuathuz6tlxrcgrs3yo5mzo5 since r-bh-1.72.0-3-il7lwc5yielc6znge3j7mjx6ccvfc6m7 failed
==> Warning: Skipping build of r-promises-1.1.1-esokirdql7gvxh6uyxq7focp5dy5ig3m since r-later-1.1.0.1-cvr5ppogpuathuz6tlxrcgrs3yo5mzo5 failed
==> Warning: Skipping build of r-dt-0.17-yp2gfiwgqwhvh4z4kwnxg55pauhm2nqe since r-promises-1.1.1-esokirdql7gvxh6uyxq7focp5dy5ig3m failed
==> Warning: Skipping build of r-utf8-1.1.4-2duoalfsbunwyclzgiiknq5ns6r5rned since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-r6-2.5.0-b3ar3cpb5zhsdyy6avrr4ic6hw53y7qf since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-crosstalk-1.1.0.1-emjjzclaeetfhr2u5fa6gpm7a7pcgant since r-r6-2.5.0-b3ar3cpb5zhsdyy6avrr4ic6hw53y7qf failed
==> Warning: Skipping build of r-purrr-0.3.4-dybd526kmmldimhslvozfwodc6rrww4j since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-plogr-0.2.0-vmham4mahj2tqsfnjiixqzqd2dpdnnyj since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-withr-2.4.2-zxmwovdknl4ofhk5lpug5fclb2f4uusc since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-cli-3.0.1-ga5bf2phfvjpyldd6szdlrfka56uhnf2 since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-htmltools-0.5.1.1-ddyttm2rorg3pnlflp37fnzewyhhahmc since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-htmlwidgets-1.5.3-xonnaerug3u4fwb6rcsjooinqbmycx5d since r-htmltools-0.5.1.1-ddyttm2rorg3pnlflp37fnzewyhhahmc failed
==> Warning: Skipping build of r-mime-0.11-v5qd2ubzfdnz625peuyjrqgjeiqsk7z3 since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-rlang-0.4.12-pjevktkvogcj5nieno7fpaalzkuoeqfw since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-ellipsis-0.3.2-ys75xaazpv72ln75ezgbgc7q2llj4zcj since r-rlang-0.4.12-pjevktkvogcj5nieno7fpaalzkuoeqfw failed
==> Warning: Skipping build of r-vctrs-0.3.8-zv57ofusd4xtdybberzbk3lhntsot4fc since r-ellipsis-0.3.2-ys75xaazpv72ln75ezgbgc7q2llj4zcj failed
==> Warning: Skipping build of r-blob-1.2.1-k4jwfghag5vhruqspe7v4vypflsrrr2q since r-vctrs-0.3.8-zv57ofusd4xtdybberzbk3lhntsot4fc failed
==> Warning: Skipping build of r-biocgenerics-0.36.0-t7umcmsxli26dcatnfajusvw2iq7iwxn since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-s4vectors-0.28.1-5bxtahmit5cuxriily6em3eomlmf6pin since r-biocgenerics-0.36.0-t7umcmsxli26dcatnfajusvw2iq7iwxn failed
==> Warning: Skipping build of r-iranges-2.24.1-nioprmvtgwxd4dy2esrbtdxppxaa4xcz since r-s4vectors-0.28.1-5bxtahmit5cuxriily6em3eomlmf6pin failed
==> Warning: Skipping build of r-biobase-2.50.0-k22ss54hmg34ngzo5t4swdk6fopzreis since r-biocgenerics-0.36.0-t7umcmsxli26dcatnfajusvw2iq7iwxn failed
==> Warning: Skipping build of r-biocversion-3.12.0-xouskc5ygsoagradgxnhkvd6n44fomvu since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-memoise-1.1.0-sd4mu7nqv6avp2ki3ksl2un7btxvxvgf since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-sys-3.4-aar3xq7zdnbbqvinqyhozh6xgrakmlav since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-askpass-1.1-6jl7s55kd67sekytrnoxna6fvbbjn3qd since r-sys-3.4-aar3xq7zdnbbqvinqyhozh6xgrakmlav failed
==> Warning: Skipping build of r-openssl-1.4.5-wr2tzw6recxc5oashlj4t2t6zujbf2eu since r-askpass-1.1-6jl7s55kd67sekytrnoxna6fvbbjn3qd failed
==> Warning: Skipping build of r-generics-0.1.1-eyov5vq47cjbrz2haq4d4rvr4ualzvzf since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-xtable-1.8-4-rfjqpllpl3csihcs4ril45rxmjxkgh4w since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-biocmanager-1.30.10-eu6hjmqgupu2cfupnyoaep75mprsaeu7 since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-fansi-0.5.0-6en7nrrpcogv6utw52rwgoiinpvttl5h since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-lazyeval-0.2.2-x5qtw3eqp7tlkfmffmrnn37oodiop7q6 since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-assertthat-0.2.1-e5nu5yxbca742mmxe4ngsh37sgzjtbsc since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-rappdirs-0.3.3-taxj4rguppruiutoyv5kx4o6hwjxsr6c since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-pkgconfig-2.0.3-ymkoj7ujg2v6ht35utom4533y2ldrr3g since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-glue-1.4.2-paln62jixi4s5oqwx47fwvue73c4irey since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-bit64-4.0.5-qdummkzvwml4u4gffwfl2kqjlu55gh6g since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-magrittr-2.0.1-bagxltcrvoof2326nsd6ctk7srve727a since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-commonmark-1.7-feh6zmd7zaxjkc76vdwl4bstb74gm2by since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-dbi-1.1.0-3ijzulqcsr37zu6pham4s5ntsaehrgox since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-jsonlite-1.7.2-4y53q37zo5zmrc7nmqo3q52hfe3l26mw since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-bit-4.0.4-zkwzjlyap5kmgvoogf6zkoavtfxforlm since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-base64enc-0.1-3-vloflrgdgfundd4t7c627rmfjayhzcq2 since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-fastmap-1.0.1-gwtu34dfke5kuoqgqdejfipo2oxd7utv since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-digest-0.6.28-unosuh7jnjbxvj4ypk3d6gqj627zfgpp since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-yaml-2.2.1-4ilo3z3qffri4p44rxqalgiaz36o7ziz since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-rcpp-1.0.7-n2ruao7tr3cg6mabmekhqzwq6doyosx7 since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-sourcetools-0.1.7-kgwhwny3widxlz65cgvqdg77rkagctat since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Error: r-annotationhub-2.22.0-uiqob6ghipj57cbwegsqjbfgbfrsjb5k: Package was not installed
==> Error: Installation request failed. Refer to reported errors for failing package(s).
[+] /usr (external pcre2-10.32-2v5oqubg7f5kjsxdijjldrqpmdiocf76)
[+] /usr (external readline-7.0-776innbqk3ca64hss3u4zvuh46f5xe4y)
[+] /usr (external xz-5.2.4-ur7otl6tq7yv3vijsn6wu2nnvot443ku)
[+] /usr (external zlib-1.2.11-o3hvygtdcp6vg3bpvsrurq4hgklwtype)
[+] /usr (external openssl-1.1.1g-dqzlhh5x3gd54fdshnsmluwmtatw7u6k)
[+] /usr (external gettext-0.19.8.1-seu57rrlbvdvq4fllw4fy75gelcj4jsh)
[+] /usr (external perl-5.26.3-cfeod657avcbjzlstrxizeulrdfnqb3r)
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/icu4c-67.1-hmdff6tgajfx4xdxnlafitauesya5c64
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/texinfo-6.5-dqgnoe2tyqkmtth6epsjkfp5uwgwvtwz
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/gmake-4.3-tihkaag6lmrhygdnlg7k47nfzh6dtujp


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