List of Open Source Software which can be built on Fugaku
 |
Spack will be used to manage open source software packages on Fugaku.
Fugaku users can easily use pre-installed packages and built packages based on Spack recipes.
The following list shows the results of building/compiling packages for aarch64 according to the Spack recipes.
Note that the results in this list do not guarantee that each package will work properly.
On the other hand, Fujitsu will provide the following packages compiled with Fujitsu compiler on Fugaku as "external" packages, of which Spack can be aware.
|
r-biocsingular 1.6.0
| Compiler | Fujitsu Compiler 4.7.0 |
|---|---|
| Result | Dependency Error |
Failed Reason
Failed to install dependency package :
------------------------------------------------
==> Warning: openjdk-11.0.12_7-a75f25zctkd65qs6k6k3deyegg5s7c6o failed to install
==> Warning: Skipping build of r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd since openjdk-11.0.12_7-a75f25zctkd65qs6k6k3deyegg5s7c6o failed
==> Warning: Skipping build of r-matrix-1.3-4-r3cv3g7e4rbjpu54oxtn36fqkknlp7bj since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-biocsingular-1.6.0-fgb6oj3akm5jnakbo47fqotyd5ybpakk since r-matrix-1.3-4-r3cv3g7e4rbjpu54oxtn36fqkknlp7bj failed
==> Warning: Skipping build of r-rsvd-1.0.3-xkb35giuuwrcba6aryh63matncinlvsq since r-matrix-1.3-4-r3cv3g7e4rbjpu54oxtn36fqkknlp7bj failed
==> Warning: Skipping build of r-irlba-2.3.3-rajphixupub4yea2q2wizugg57rgptbn since r-matrix-1.3-4-r3cv3g7e4rbjpu54oxtn36fqkknlp7bj failed
==> Warning: Skipping build of r-delayedarray-0.16.1-jz7uqywx7r6akhy6fovva2w5t6dmqqvj since r-matrix-1.3-4-r3cv3g7e4rbjpu54oxtn36fqkknlp7bj failed
==> Warning: Skipping build of r-beachmat-2.6.4-dbsxe3yhuniyiiph2jbstslablrl45vo since r-delayedarray-0.16.1-jz7uqywx7r6akhy6fovva2w5t6dmqqvj failed
==> Warning: Skipping build of r-s4vectors-0.28.1-5bxtahmit5cuxriily6em3eomlmf6pin since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-iranges-2.24.1-nioprmvtgwxd4dy2esrbtdxppxaa4xcz since r-s4vectors-0.28.1-5bxtahmit5cuxriily6em3eomlmf6pin failed
==> Warning: Skipping build of r-lattice-0.20-44-zhivmcbxm5rdy4fhq5xebw2ddplo4vo5 since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-formatr-1.7-gywjikfj5dc4vm3ivr6gjfebg53zcxio since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-lambda-r-1.2.4-zwmlt55p3b6tgv2prsmgojuv5f67sm3a since r-formatr-1.7-gywjikfj5dc4vm3ivr6gjfebg53zcxio failed
==> Warning: Skipping build of r-futile-logger-1.4.3-rryohpdaguj4f5knujmauoztccczppgu since r-lambda-r-1.2.4-zwmlt55p3b6tgv2prsmgojuv5f67sm3a failed
==> Warning: Skipping build of r-biocparallel-1.24.1-qvbkuowbn32dhn7ezem5yccbgxddq47l since r-futile-logger-1.4.3-rryohpdaguj4f5knujmauoztccczppgu failed
==> Warning: Skipping build of r-snow-0.4-3-kivuxvl7ctiy6swglgtzr3zwpmlmhvty since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-bh-1.72.0-3-il7lwc5yielc6znge3j7mjx6ccvfc6m7 since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-rcpp-1.0.7-n2ruao7tr3cg6mabmekhqzwq6doyosx7 since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-matrixgenerics-1.2.1-q7bzh4ufdajhr33sqnvze5jv2smljfg3 since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-biocgenerics-0.36.0-t7umcmsxli26dcatnfajusvw2iq7iwxn since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-futile-options-1.0.1-o46fmp4o4kocjgvaxlokybrmorh4nk5l since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-matrixstats-0.61.0-hejlwgzjrzlugmbbuv3vtc5bdb3kix7z since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: AssertionError exception when releasing read lock for openjdk-11.0.12_7-a75f25zctkd65qs6k6k3deyegg5s7c6o:
==> Error: r-biocsingular-1.6.0-fgb6oj3akm5jnakbo47fqotyd5ybpakk: Package was not installed
==> Error: Installation request failed. Refer to reported errors for failing package(s).
[+] /usr (external bzip2-1.0.6-pkyqs6czmr636ktska3fpjek77reodry)
[+] /usr (external curl-7.61.1-s5ho6wv4jx7d2f2vj27fvdaok5ajslfc)
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/gnuconfig-2021-08-14-ezyvb3gy7i726n45kwb44a4vxle3if3i
[+] /vol0003/rccs-sdt/a01008/opt/python/3.9.9/fj (external python-3.9.9-3wcip6atrybofsb566d7pjqwhl76u4dp)
[+] /usr (external ncurses-6.1-qbvus6vwvtyxe33hxq4hbpazkrpy6ctb)
[+] /usr (external pcre2-10.32-2v5oqubg7f5kjsxdijjldrqpmdiocf76)
[+] /usr (external readline-7.0-776innbqk3ca64hss3u4zvuh46f5xe4y)
[+] /usr (external xz-5.2.4-ur7otl6tq7yv3vijsn6wu2nnvot443ku)
[+] /usr (external zlib-1.2.11-o3hvygtdcp6vg3bpvsrurq4hgklwtype)
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/icu4c-67.1-hmdff6tgajfx4xdxnlafitauesya5c64
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