List of Open Source Software which can be built on Fugaku

Spack logo
Spack will be used to manage open source software packages on Fugaku. Fugaku users can easily use pre-installed packages and built packages based on Spack recipes. The following list shows the results of building/compiling packages for aarch64 according to the Spack recipes. Note that the results in this list do not guarantee that each package will work properly. On the other hand, Fujitsu will provide the following packages compiled with Fujitsu compiler on Fugaku as "external" packages, of which Spack can be aware.
  • OpenJDK 11
  • Ruby 2.6.5 or later
  • Python2 2.7.15
  • Python3 3.6.8
  • Numpy 1.14.3
  • SciPy 1.0.0
  • Eclipse IDE 2019-09 R Packages
Please contact us from email:

r-bsseq 1.26.0

Compiler Fujitsu Compiler 4.7.0
Result Dependency Error

Failed Reason

Failed to install dependency package :
------------------------------------------------
==> Warning: openjdk-11.0.12_7-a75f25zctkd65qs6k6k3deyegg5s7c6o failed to install
==> Warning: Skipping build of r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd since openjdk-11.0.12_7-a75f25zctkd65qs6k6k3deyegg5s7c6o failed
==> Warning: Skipping build of r-r-oo-1.24.0-vyzqkhmv6wzxejfo4sfgowwygckagfuw since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-r-utils-2.10.1-he7vy2joq4my4copw467uepqwsnotzxk since r-r-oo-1.24.0-vyzqkhmv6wzxejfo4sfgowwygckagfuw failed
==> Warning: Skipping build of r-bsseq-1.26.0-6rbjiu32yvnclsfjgqzwwl57ln6bct6u since r-r-utils-2.10.1-he7vy2joq4my4copw467uepqwsnotzxk failed
==> Warning: Skipping build of r-matrixstats-0.61.0-hejlwgzjrzlugmbbuv3vtc5bdb3kix7z since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-matrixgenerics-1.2.1-q7bzh4ufdajhr33sqnvze5jv2smljfg3 since r-matrixstats-0.61.0-hejlwgzjrzlugmbbuv3vtc5bdb3kix7z failed
==> Warning: Skipping build of r-summarizedexperiment-1.20.0-5qtuptrjxt7hm5q32dmlavmi6d7mhtwa since r-matrixgenerics-1.2.1-q7bzh4ufdajhr33sqnvze5jv2smljfg3 failed
==> Warning: Skipping build of r-genomicalignments-1.26.0-5m5q32l6ukong4dwo43li6qywnfbre7s since r-summarizedexperiment-1.20.0-5qtuptrjxt7hm5q32dmlavmi6d7mhtwa failed
==> Warning: Skipping build of r-rtracklayer-1.50.0-by52n6e54jea3qqzs6nlx7apx6r2asoi since r-genomicalignments-1.26.0-5m5q32l6ukong4dwo43li6qywnfbre7s failed
==> Warning: Skipping build of r-bsgenome-1.58.0-t3s6eke5xvdxgcpnwrrfhy7hoqtcdtz2 since r-rtracklayer-1.50.0-by52n6e54jea3qqzs6nlx7apx6r2asoi failed
==> Warning: Skipping build of r-delayedarray-0.16.1-jz7uqywx7r6akhy6fovva2w5t6dmqqvj since r-matrixgenerics-1.2.1-q7bzh4ufdajhr33sqnvze5jv2smljfg3 failed
==> Warning: Skipping build of r-hdf5array-1.18.0-33sla6bpmvvrrqujlpqohfvc6c3xncsy since r-delayedarray-0.16.1-jz7uqywx7r6akhy6fovva2w5t6dmqqvj failed
==> Warning: Skipping build of r-delayedmatrixstats-1.12.3-tmw23iewmojs4bf5y2scx2bwjadwynmg since r-hdf5array-1.18.0-33sla6bpmvvrrqujlpqohfvc6c3xncsy failed
==> Warning: Skipping build of r-beachmat-2.6.4-dbsxe3yhuniyiiph2jbstslablrl45vo since r-delayedarray-0.16.1-jz7uqywx7r6akhy6fovva2w5t6dmqqvj failed
==> Warning: Skipping build of r-sparsematrixstats-1.2.1-y6otafz7bzmwg5o3uofwwegh2j7u73oo since r-matrixgenerics-1.2.1-q7bzh4ufdajhr33sqnvze5jv2smljfg3 failed
==> Warning: Skipping build of r-glue-1.4.2-paln62jixi4s5oqwx47fwvue73c4irey since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-lifecycle-1.0.1-nkdn4avwjnsdmwrqt6crzfyjhmmo5amb since r-glue-1.4.2-paln62jixi4s5oqwx47fwvue73c4irey failed
==> Warning: Skipping build of r-scales-1.1.1-p7fehdy6ehoaqqiivq5g3g5jjrrawgmy since r-lifecycle-1.0.1-nkdn4avwjnsdmwrqt6crzfyjhmmo5amb failed
==> Warning: Skipping build of r-rlang-0.4.12-pjevktkvogcj5nieno7fpaalzkuoeqfw since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-rcpp-1.0.7-n2ruao7tr3cg6mabmekhqzwq6doyosx7 since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-s4vectors-0.28.1-5bxtahmit5cuxriily6em3eomlmf6pin since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-biostrings-2.58.0-plpulhkzzn5yfoywr7xdbx34x4xx3xhr since r-s4vectors-0.28.1-5bxtahmit5cuxriily6em3eomlmf6pin failed
==> Warning: Skipping build of r-rsamtools-2.6.0-uysjkhvzsljfjpwq272eum33qdoskwhu since r-biostrings-2.58.0-plpulhkzzn5yfoywr7xdbx34x4xx3xhr failed
==> Warning: Skipping build of r-xvector-0.30.0-on35ndurs3qy4qibfzsyp3yxhstrwnip since r-s4vectors-0.28.1-5bxtahmit5cuxriily6em3eomlmf6pin failed
==> Warning: Skipping build of r-genomicranges-1.42.0-yet6dx6csctowmjbzito3kxyw3w4sg36 since r-xvector-0.30.0-on35ndurs3qy4qibfzsyp3yxhstrwnip failed
==> Warning: Skipping build of r-genomeinfodb-1.26.2-mxuc2xuyclh5ytnoeaquyjppoyeykf35 since r-s4vectors-0.28.1-5bxtahmit5cuxriily6em3eomlmf6pin failed
==> Warning: Skipping build of r-iranges-2.24.1-nioprmvtgwxd4dy2esrbtdxppxaa4xcz since r-s4vectors-0.28.1-5bxtahmit5cuxriily6em3eomlmf6pin failed
==> Warning: Skipping build of r-gtools-3.8.2-rnjraoxq5pwfxbzq4wvwsnt46uquoa5d since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-munsell-0.5.0-cqfcagu5rjlz24u7bshygm74ufelr6zp since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-futile-options-1.0.1-o46fmp4o4kocjgvaxlokybrmorh4nk5l since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-futile-logger-1.4.3-rryohpdaguj4f5knujmauoztccczppgu since r-futile-options-1.0.1-o46fmp4o4kocjgvaxlokybrmorh4nk5l failed
==> Warning: Skipping build of r-biocparallel-1.24.1-qvbkuowbn32dhn7ezem5yccbgxddq47l since r-futile-logger-1.4.3-rryohpdaguj4f5knujmauoztccczppgu failed
==> Warning: Skipping build of r-zlibbioc-1.36.0-sdvwjc64hrf6l35wghdowhacglg5fxcz since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-rhtslib-1.22.0-kpa2gstbwkmfkhpxwasvvqdkuhbb5jxo since r-zlibbioc-1.36.0-sdvwjc64hrf6l35wghdowhacglg5fxcz failed
==> Warning: Skipping build of r-locfit-1.5-9.4-5hogtsij7ltlwk6n6a3ixdkmujsxdaf2 since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-permute-0.9-5-wqplmi2g5q66tnyt2wgxzz5242ufsquq since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-colorspace-2.0-0-2awls42ciwhfkvr6ftxwwix5nkdpk7jm since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-rcurl-1.98-1.2-ihfxrq7nhfv4p7fkaum7pjdf32tda6ga since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-bh-1.72.0-3-il7lwc5yielc6znge3j7mjx6ccvfc6m7 since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-r6-2.5.0-b3ar3cpb5zhsdyy6avrr4ic6hw53y7qf since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-r-methodss3-1.8.1-v74cwgaq6zo6onzmw46kts4dbllv467x since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-data-table-1.14.2-n3wkntzloimb6eciisozcpgnsms6phcs since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-rhdf5-2.34.0-vyy5gvp2wtgikhp6vjblkdsju4cs4jlv since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-rhdf5filters-1.2.0-6zvoevfuv6hsq5xqrgapshbfqm464yqc since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-limma-3.46.0-kkkjcoqx4zrjkahznwgwi4w6q2uqm5dn since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-lattice-0.20-44-zhivmcbxm5rdy4fhq5xebw2ddplo4vo5 since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-matrix-1.3-4-r3cv3g7e4rbjpu54oxtn36fqkknlp7bj since r-lattice-0.20-44-zhivmcbxm5rdy4fhq5xebw2ddplo4vo5 failed
==> Warning: Skipping build of r-xml-3.99-0.5-oea33cpb5qdwxoiq2hbfbznax4ffudyi since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-rhdf5lib-1.12.1-vzqe7dcfktnw6x5bydv25afnj6vlxiei since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-farver-2.1.0-fkjunclvnzkvxfd5etm6tvepcx57ky3r since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-bitops-1.0-6-biw3arsxxqsurcidocpejdhvzs4fx27p since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-rcolorbrewer-1.1-2-dqk4xodtaoii4g67royddbtzkz7ksqr4 since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-biocgenerics-0.36.0-t7umcmsxli26dcatnfajusvw2iq7iwxn since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-biobase-2.50.0-k22ss54hmg34ngzo5t4swdk6fopzreis since r-biocgenerics-0.36.0-t7umcmsxli26dcatnfajusvw2iq7iwxn failed
==> Warning: Skipping build of r-formatr-1.7-gywjikfj5dc4vm3ivr6gjfebg53zcxio since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-lambda-r-1.2.4-zwmlt55p3b6tgv2prsmgojuv5f67sm3a since r-formatr-1.7-gywjikfj5dc4vm3ivr6gjfebg53zcxio failed
==> Warning: Skipping build of r-labeling-0.4.2-p4pjxij7u3yfufbovmvg5ggveqqvh573 since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-snow-0.4-3-kivuxvl7ctiy6swglgtzr3zwpmlmhvty since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-viridislite-0.3.0-mzjnber6d5x6tff665vfg6akjnqhusha since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-genomeinfodbdata-1.2.1-34jleow3dp4zxvlcxeecg2wuosnojqzs since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-crayon-1.4.1-oebib5duroblw7btkhfazy73odikeipe since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: AssertionError exception when releasing read lock for openjdk-11.0.12_7-a75f25zctkd65qs6k6k3deyegg5s7c6o:
==> Error: r-bsseq-1.26.0-6rbjiu32yvnclsfjgqzwwl57ln6bct6u: Package was not installed
==> Error: Installation request failed. Refer to reported errors for failing package(s).
[+] /usr (external bzip2-1.0.6-pkyqs6czmr636ktska3fpjek77reodry)
[+] /usr (external curl-7.61.1-s5ho6wv4jx7d2f2vj27fvdaok5ajslfc)
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/gnuconfig-2021-08-14-ezyvb3gy7i726n45kwb44a4vxle3if3i
[+] /vol0003/rccs-sdt/a01008/opt/python/3.9.9/fj (external python-3.9.9-3wcip6atrybofsb566d7pjqwhl76u4dp)
[+] /usr (external ncurses-6.1-qbvus6vwvtyxe33hxq4hbpazkrpy6ctb)
[+] /usr (external pcre2-10.32-2v5oqubg7f5kjsxdijjldrqpmdiocf76)
[+] /usr (external readline-7.0-776innbqk3ca64hss3u4zvuh46f5xe4y)
[+] /usr (external xz-5.2.4-ur7otl6tq7yv3vijsn6wu2nnvot443ku)
[+] /usr (external zlib-1.2.11-o3hvygtdcp6vg3bpvsrurq4hgklwtype)
[+] /usr (external gettext-0.19.8.1-seu57rrlbvdvq4fllw4fy75gelcj4jsh)
[+] /usr (external perl-5.26.3-cfeod657avcbjzlstrxizeulrdfnqb3r)
[+] /usr (external libxml2-2.9.7-sjfhie7egvrddyaxgsplnop3zfbkkssb)
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/icu4c-67.1-hmdff6tgajfx4xdxnlafitauesya5c64
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/texinfo-6.5-dqgnoe2tyqkmtth6epsjkfp5uwgwvtwz
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/gmake-4.3-tihkaag6lmrhygdnlg7k47nfzh6dtujp


<= Back to list