List of Open Source Software which can be built on Fugaku

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Spack will be used to manage open source software packages on Fugaku. Fugaku users can easily use pre-installed packages and built packages based on Spack recipes. The following list shows the results of building/compiling packages for aarch64 according to the Spack recipes. Note that the results in this list do not guarantee that each package will work properly. On the other hand, Fujitsu will provide the following packages compiled with Fujitsu compiler on Fugaku as "external" packages, of which Spack can be aware.
  • OpenJDK 11
  • Ruby 2.6.5 or later
  • Python2 2.7.15
  • Python3 3.6.8
  • Numpy 1.14.3
  • SciPy 1.0.0
  • Eclipse IDE 2019-09 R Packages
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r-complexheatmap 2.6.2

Compiler Fujitsu Compiler 4.7.0
Result Dependency Error

Failed Reason

Failed to install dependency package :
------------------------------------------------
[+] /usr (external bzip2-1.0.6-pkyqs6czmr636ktska3fpjek77reodry)
[+] /usr (external autoconf-2.69-me3qacnq6as2fvkhuiia2ks5udajax3b)
[+] /usr (external automake-1.16.1-gbketv7wv244mk5mkf65hyjxew4yocxo)
[+] /usr (external fontconfig-2.13.1-475funvpla3nja4743rawe2qwjbkkeni)
[+] /usr (external freetype-2.9.1-dwvapggh55qh4fl64dvaxm2ht5fauxe5)
[+] /usr (external gettext-0.19.8.1-seu57rrlbvdvq4fllw4fy75gelcj4jsh)
[+] /usr (external libffi-3.1-uuxtnkymztbpq4zptdhyixqk66asyl33)
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/gnuconfig-2021-08-14-ezyvb3gy7i726n45kwb44a4vxle3if3i
[+] /vol0003/rccs-sdt/a01008/opt/python/3.9.9/fj (external python-3.9.9-3wcip6atrybofsb566d7pjqwhl76u4dp)
[+] /usr (external pcre-8.42-ubt55iodsyy4jsmwgjpm7otqpdrrpgt2)
[+] /usr (external perl-5.26.3-cfeod657avcbjzlstrxizeulrdfnqb3r)
[+] /usr (external pkgconf-1.4.2-x2r3t6jrikcoqgyvulfa2xm3cgearc2z)
[+] /usr (external zlib-1.2.11-o3hvygtdcp6vg3bpvsrurq4hgklwtype)
[+] /usr (external libtool-2.4.6-snb3wjzerg4q7w57akrhqlg2hfvalawy)
[+] /usr (external libxcb-1.13.1-pniljincsbm5wvgwonote4rpath4jsb6)
[+] /usr (external m4-1.4.18-zz6lq3qkexluljpiw5yxqyozzhkijvpn)
[+] /usr (external libpng-1.6.34-heedxfzojpqtiev7bmm3u2nkfuqztjea)
[+] /usr (external curl-7.61.1-s5ho6wv4jx7d2f2vj27fvdaok5ajslfc)
[+] /usr (external ncurses-6.1-qbvus6vwvtyxe33hxq4hbpazkrpy6ctb)
[+] /usr (external libuuid-2.32.1-cho3cxgnsepebks5vpp5itx6oqs7he5i)
[+] /usr (external pcre2-10.32-2v5oqubg7f5kjsxdijjldrqpmdiocf76)
[+] /usr (external readline-7.0-776innbqk3ca64hss3u4zvuh46f5xe4y)
[+] /usr (external tcl-8.6.8-h4723xfvqw7mjbknqbrq45y4zzgw7pwb)
[+] /usr (external xz-5.2.4-ur7otl6tq7yv3vijsn6wu2nnvot443ku)
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/util-macros-1.19.3-xcqo73bn3nuqaorzcxbwe7gryrrs3tdi
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/libiconv-1.16-53uyda5tbc4cft2ipchbsft56qsivt74
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/nasm-2.15.05-ondar7fl4cx5br57fs2a4e67d6h2w55p
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/findutils-4.8.0-hbp3a5kijvggip2hu6cjjjtqnruxmh76
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/libtiff-4.3.0-ysjlpzh7gtl76ka27kk6c3isdpgyztqa
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/icu4c-67.1-hmdff6tgajfx4xdxnlafitauesya5c64
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/ninja-1.10.2-xqnjrwwmhbcvrxnzad4eoj6ty5bftx6l
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/py-setuptools-58.2.0-nwtt7d5cczfaezzecmrcr4swo63tvrg2
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/fribidi-1.0.5-rmxw4pmdvvteoxm5werswflo2e5jbytm
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/pixman-0.40.0-mcosjwnucdcas2shgcez6kidnpwmu7jn
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/cmake-3.21.4-vgsk3aw6j4szlnkzjz3u57u7qtoosnkz
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/xproto-7.0.31-n6xybhebufw3zdril463kwsnnuew4q4i
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/renderproto-0.11.1-q63ef4mmhyjt72oxtqag4n3nw32dea4w
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/xtrans-1.3.5-sgtmuv7h3kn27aay6txsvbgd22lavhcs
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/scrnsaverproto-1.2.2-abrcaabjpnyvq3zpuk62aeswvapiq3cz
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/xextproto-7.3.0-qbikyiot5dv6grrlyfqkuej7gi5oxtcq
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/kbproto-1.0.7-qjgaga75dax4l6dx3f3mnas6dwjwhdeq
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/inputproto-2.3.2-z5vw4hedhfulpou53ympwrbaanznze7j
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/diffutils-3.8-c3z2qrsurl5l57yct4kuz2mxjyjywwgz
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/meson-0.60.0-ndoo3khnwedtaakey3qtuh2r6fqq5v6k
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/graphite2-1.3.13-vlo3try626rst6dnpsl6br2sbl2pjw5p
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/libjpeg-turbo-2.1.0-uocr25meow4yzjybzchavleirgndwx4i
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/libice-1.0.9-boprdw5qnkkrbq4uhpzda7za64y7msp7
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/libx11-1.7.0-fyvzrgtkbqtq4v4rxiqvdbd5gvs5z4tj
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/bison-3.8.2-ta2ecl7xyo4uznxun3zvhbitdklgbcck
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/glib-2.70.0-rwhiqulrjvqznxg7eacgg4yob6viseed
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/libsm-1.2.3-mbazk3gqcic3fb2aqpeeomq65qoyys4m
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/libxext-1.3.3-hcgqaqoatemrgucdestrnsad7hnnoocx
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/libxrender-0.9.10-hn27hcz6sqvglj6l6ti2nvmxspe7t5cl
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/flex-2.6.3-pefwrvzgcd6f4nkwmynv7ibzizsip6wk
==> Installing openjdk-11.0.12_7-a75f25zctkd65qs6k6k3deyegg5s7c6o
==> No binary for openjdk-11.0.12_7-a75f25zctkd65qs6k6k3deyegg5s7c6o found: installing from source
==> Using cached archive: /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/var/spack/cache/_source-cache/archive/10/105bdc12fcd54c551e8e8ac96bc82412467244c32063689c41cee29ceb7452a2.tar.gz
==> No patches needed for openjdk
==> openjdk: Executing phase: 'install'
==> Error: PermissionError: [Errno 13] Permission denied: '/vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/openjdk-11.0.12_7-a75f25zctkd65qs6k6k3deyegg5s7c6o/legal/jdk.crypto.ec/ecc.md'

/vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/var/spack/repos/builtin/packages/openjdk/package.py:144, in install:
142 def install(self, spec, prefix):
143 top_dir = 'Contents/Home/' if platform.system() == "Darwin" else '.'
>> 144 install_tree(top_dir, prefix)

See build log for details:
/home/rccs-sdt/a01008/spack-stage/spack-stage-openjdk-11.0.12_7-a75f25zctkd65qs6k6k3deyegg5s7c6o/spack-build-out.txt

==> Warning: Skipping build of r-4.1.1-rp6enrqfvvl5s6cnnzqvasbizy3tjrca since openjdk-11.0.12_7-a75f25zctkd65qs6k6k3deyegg5s7c6o failed
==> Warning: Skipping build of r-complexheatmap-2.6.2-yol6umhwaigdbjyaf63plcxm2g5swrwi since r-4.1.1-rp6enrqfvvl5s6cnnzqvasbizy3tjrca failed
==> Warning: Skipping build of r-shape-1.4.5-e7sx2c2bcafade672t5q6oo7tezicge6 since r-4.1.1-rp6enrqfvvl5s6cnnzqvasbizy3tjrca failed
==> Warning: Skipping build of r-circlize-0.4.12-alm2jdmtxchb5wd7rrakehffnfbkmqos since r-shape-1.4.5-e7sx2c2bcafade672t5q6oo7tezicge6 failed
==> Warning: Skipping build of r-rcolorbrewer-1.1-2-e7rbyg2t7pbvonv5idnksbvovrrsv6zk since r-4.1.1-rp6enrqfvvl5s6cnnzqvasbizy3tjrca failed
==> Warning: Skipping build of r-globaloptions-0.1.2-2l6p6qpuxloqzff2dtcoe3q3c7exzreb since r-4.1.1-rp6enrqfvvl5s6cnnzqvasbizy3tjrca failed
==> Warning: Skipping build of r-getoptlong-1.0.5-jbrqfsce4r6p4fkoyun4pptiz7htccbo since r-globaloptions-0.1.2-2l6p6qpuxloqzff2dtcoe3q3c7exzreb failed
==> Warning: Skipping build of r-iranges-2.24.1-jcrqnjk5l7mro76m6wtkmumfyxxaicqv since r-4.1.1-rp6enrqfvvl5s6cnnzqvasbizy3tjrca failed
==> Warning: Skipping build of r-digest-0.6.28-hascrr6ndtt4r5np4pdfeqreemjt6gdg since r-4.1.1-rp6enrqfvvl5s6cnnzqvasbizy3tjrca failed
==> Warning: Skipping build of r-cluster-2.1.0-54mzhojgldknpk7eludyzrgds5j6hc3n since r-4.1.1-rp6enrqfvvl5s6cnnzqvasbizy3tjrca failed
==> Warning: Skipping build of r-clue-0.3-58-rryfxgpsybghkdotyyx7t37t2zyfpsas since r-cluster-2.1.0-54mzhojgldknpk7eludyzrgds5j6hc3n failed
==> Warning: Skipping build of r-biocgenerics-0.36.0-uosgufen6n6cbndx7uqzc2ar4lt5dcfp since r-4.1.1-rp6enrqfvvl5s6cnnzqvasbizy3tjrca failed
==> Warning: Skipping build of r-s4vectors-0.28.1-ow3rq67oh2io75di3hu5dpherry7wq36 since r-biocgenerics-0.36.0-uosgufen6n6cbndx7uqzc2ar4lt5dcfp failed
==> Warning: Skipping build of r-rjson-0.2.20-ticybebaupzdycvia5x6im5wjdoonmnc since r-4.1.1-rp6enrqfvvl5s6cnnzqvasbizy3tjrca failed
==> Warning: Skipping build of r-matrixstats-0.61.0-rtfopav57dh5ny75kteeqyvv7puuawio since r-4.1.1-rp6enrqfvvl5s6cnnzqvasbizy3tjrca failed
==> Warning: Skipping build of r-png-0.1-7-rztdzjnzof2saielsboob3lqdcv6dw5c since r-4.1.1-rp6enrqfvvl5s6cnnzqvasbizy3tjrca failed
==> Warning: Skipping build of r-crayon-1.4.1-thvxbn2ot75jeckfg7wwxa3qvplazi7f since r-4.1.1-rp6enrqfvvl5s6cnnzqvasbizy3tjrca failed
==> Warning: Skipping build of r-cairo-1.5-12.2-usukf7jpouuvsfq3mmmoiat3xp525h76 since r-4.1.1-rp6enrqfvvl5s6cnnzqvasbizy3tjrca failed
==> Warning: Skipping build of r-colorspace-2.0-0-sz4nkyofo4u6cpd7cb2f6qn7pijmd4a7 since r-4.1.1-rp6enrqfvvl5s6cnnzqvasbizy3tjrca failed
==> Error: r-complexheatmap-2.6.2-yol6umhwaigdbjyaf63plcxm2g5swrwi: Package was not installed
==> Error: Installation request failed. Refer to reported errors for failing package(s).
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/libxt-1.1.5-3etyomn3lci3u45q7kvuygxhj5vbqx23
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/libxscrnsaver-1.2.2-3x7b6slgvae6qzslykvkylwe3dzjmttr
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/libxft-2.3.2-qqnswcxjx7fv2ezxlqvdcjoyrjy66m5e
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/cairo-1.16.0-mvxcstlhed7t2sykgv4sh44iogem7s4v
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/libxmu-1.1.2-jfpstubpewrlxjzlrl5vo4tbq3om76qj
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/tk-8.6.11-ykfaimmi6otggicyuswwy5vomd66e2et
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/gobject-introspection-1.56.1-z3ktjh66s262oi3lbc5qaobmgftk5ius
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/harfbuzz-2.6.8-lrz2ce6vapd5lgmdgrcu3d7sqihb6ndq
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/pango-1.42.0-zq46vtnshmek6gazgdgmusa25qbvp5mn


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