List of Open Source Software which can be built on Fugaku

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Spack will be used to manage open source software packages on Fugaku. Fugaku users can easily use pre-installed packages and built packages based on Spack recipes. The following list shows the results of building/compiling packages for aarch64 according to the Spack recipes. Note that the results in this list do not guarantee that each package will work properly. On the other hand, Fujitsu will provide the following packages compiled with Fujitsu compiler on Fugaku as "external" packages, of which Spack can be aware.
  • OpenJDK 11
  • Ruby 2.6.5 or later
  • Python2 2.7.15
  • Python3 3.6.8
  • Numpy 1.14.3
  • SciPy 1.0.0
  • Eclipse IDE 2019-09 R Packages
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r-corhmm 2.6

Compiler Fujitsu Compiler 4.7.0
Result Dependency Error

Failed Reason

Failed to install dependency package :
------------------------------------------------
[+] /usr (external bzip2-1.0.6-pkyqs6czmr636ktska3fpjek77reodry)
[+] /usr (external curl-7.61.1-s5ho6wv4jx7d2f2vj27fvdaok5ajslfc)
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/gnuconfig-2021-08-14-ezyvb3gy7i726n45kwb44a4vxle3if3i
[+] /vol0003/rccs-sdt/a01008/opt/python/3.9.9/fj (external python-3.9.9-3wcip6atrybofsb566d7pjqwhl76u4dp)
[+] /usr (external ncurses-6.1-qbvus6vwvtyxe33hxq4hbpazkrpy6ctb)
[+] /usr (external pcre2-10.32-2v5oqubg7f5kjsxdijjldrqpmdiocf76)
[+] /usr (external readline-7.0-776innbqk3ca64hss3u4zvuh46f5xe4y)
[+] /usr (external xz-5.2.4-ur7otl6tq7yv3vijsn6wu2nnvot443ku)
[+] /usr (external zlib-1.2.11-o3hvygtdcp6vg3bpvsrurq4hgklwtype)
[+] /usr (external gmp-6.1.2-aweb6qdw6k72z5szxngketpntkdvprym)
[+] /usr (external libxml2-2.9.7-sjfhie7egvrddyaxgsplnop3zfbkkssb)
[+] /opt/FJSVxtclanga/tcsds-latest (external fujitsu-ssl2-head-qa7iyj5emttingfmlg3424h3vekiviw3)
[+] /usr (external automake-1.16.1-gbketv7wv244mk5mkf65hyjxew4yocxo)
[+] /usr (external pcre-8.42-ubt55iodsyy4jsmwgjpm7otqpdrrpgt2)
[+] /usr (external pkgconf-1.4.2-x2r3t6jrikcoqgyvulfa2xm3cgearc2z)
[+] /usr (external autoconf-2.69-me3qacnq6as2fvkhuiia2ks5udajax3b)
[+] /usr (external libtool-2.4.6-snb3wjzerg4q7w57akrhqlg2hfvalawy)
[+] /usr (external m4-1.4.18-zz6lq3qkexluljpiw5yxqyozzhkijvpn)
[+] /usr (external perl-5.26.3-cfeod657avcbjzlstrxizeulrdfnqb3r)
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/autoconf-archive-2019.01.06-5xupizjwrucyxednhyet5tkdx7jnlc4n
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/glpk-4.65-2i74jls3co4eb5raslkg3fvf57lysbg3
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/py-setuptools-58.2.0-nwtt7d5cczfaezzecmrcr4swo63tvrg2
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/icu4c-67.1-hmdff6tgajfx4xdxnlafitauesya5c64
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/cmake-3.21.4-vgsk3aw6j4szlnkzjz3u57u7qtoosnkz
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/swig-4.0.2-fscqhexdv3m4dy7xycwmjs3nibvrsows
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/texinfo-6.5-dqgnoe2tyqkmtth6epsjkfp5uwgwvtwz
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/py-cython-0.29.24-rmuycsh3hdsfbp3ffdahdadzgeju5kfs
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/mpfr-4.1.0-lgxxsheprifg75vh4dowz2xxfiy23x4s
==> Installing py-numpy-1.21.3-eopspnavmocj2cziofoszo4vonyhfseh
==> No binary for py-numpy-1.21.3-eopspnavmocj2cziofoszo4vonyhfseh found: installing from source
==> Using cached archive: /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/var/spack/cache/_source-cache/archive/63/63571bb7897a584ca3249c86dd01c10bcb5fe4296e3568b2e9c1a55356b6410e.zip
==> Applied patch /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/var/spack/repos/builtin/packages/py-numpy/check_executables.patch
==> py-numpy: Executing phase: 'build'
==> Error: ProcessError: Command exited with status 1:
'/vol0003/rccs-sdt/a01008/opt/python/3.9.9/fj/bin/python3.9' '-s' 'setup.py' '--no-user-cfg' 'build'
See build log for details:
/home/rccs-sdt/a01008/spack-stage/spack-stage-py-numpy-1.21.3-eopspnavmocj2cziofoszo4vonyhfseh/spack-build-out.txt

==> Warning: Skipping build of nlopt-2.7.0-45pjt4bjezpaqu6dlxw6ocob4hbe63qy since py-numpy-1.21.3-eopspnavmocj2cziofoszo4vonyhfseh failed
==> Warning: Skipping build of r-nloptr-1.2.2.2-i5vonah2wpt2asxvrzjv2jednd2pxovt since nlopt-2.7.0-45pjt4bjezpaqu6dlxw6ocob4hbe63qy failed
==> Warning: Skipping build of r-corhmm-2.6-3jxzoxtkihedwynb7mgl6vpxhykjp3c3 since r-nloptr-1.2.2.2-i5vonah2wpt2asxvrzjv2jednd2pxovt failed
==> Warning: openjdk-11.0.12_7-a75f25zctkd65qs6k6k3deyegg5s7c6o failed to install
==> Warning: Skipping build of r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd since openjdk-11.0.12_7-a75f25zctkd65qs6k6k3deyegg5s7c6o failed
==> Warning: Skipping build of r-igraph-1.2.6-wcz7giirt2cpz7lxfmdvqg34jxa7z43o since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-phangorn-2.5.5-nbq33lvszxwgc4aauxmejv2isxb4vb3p since r-igraph-1.2.6-wcz7giirt2cpz7lxfmdvqg34jxa7z43o failed
==> Warning: Skipping build of r-phytools-0.7-70-3czj73tio66wr7ibrevm5hc6znudl7iw since r-phangorn-2.5.5-nbq33lvszxwgc4aauxmejv2isxb4vb3p failed
==> Warning: Skipping build of r-maps-3.3.0-ebz6wxvjr6p7zuamnrtip5bb44tufkzx since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-tmvnsim-1.0-2-asffc6x5geu33ngzppfhoxisc2stxphr since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-mnormt-2.0.2-dnadbltp4laewp6c7xwld3hrqfpx2wwo since r-tmvnsim-1.0-2-asffc6x5geu33ngzppfhoxisc2stxphr failed
==> Warning: Skipping build of r-rcpp-1.0.7-n2ruao7tr3cg6mabmekhqzwq6doyosx7 since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-ape-5.4-1-2bmndcukdtikbg6ju2pxx4vudzirtg5k since r-rcpp-1.0.7-n2ruao7tr3cg6mabmekhqzwq6doyosx7 failed
==> Warning: Skipping build of r-ggplot2-3.3.5-56eivbcpt7q5eqey5fjagmohreh26i3f since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-viridis-0.5.1-otpwya5ngsbok2kdwqplyeji5bsz4535 since r-ggplot2-3.3.5-56eivbcpt7q5eqey5fjagmohreh26i3f failed
==> Warning: Skipping build of r-clustergeneration-1.3.7-ahbjhhyltvi7dwfhwmfowkkv2jwa4hv3 since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-colorspace-2.0-0-2awls42ciwhfkvr6ftxwwix5nkdpk7jm since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-munsell-0.5.0-cqfcagu5rjlz24u7bshygm74ufelr6zp since r-colorspace-2.0-0-2awls42ciwhfkvr6ftxwwix5nkdpk7jm failed
==> Warning: Skipping build of r-scales-1.1.1-p7fehdy6ehoaqqiivq5g3g5jjrrawgmy since r-munsell-0.5.0-cqfcagu5rjlz24u7bshygm74ufelr6zp failed
==> Warning: Skipping build of r-farver-2.1.0-fkjunclvnzkvxfd5etm6tvepcx57ky3r since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-withr-2.4.2-zxmwovdknl4ofhk5lpug5fclb2f4uusc since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-pkgload-1.1.0-slxc5rmo4eljayiryt7sopppderxupg5 since r-withr-2.4.2-zxmwovdknl4ofhk5lpug5fclb2f4uusc failed
==> Warning: Skipping build of r-testthat-3.0.1-ftdupxt5ovnv3ayczdhzley7rlgqrh6q since r-pkgload-1.1.0-slxc5rmo4eljayiryt7sopppderxupg5 failed
==> Warning: Skipping build of r-isoband-0.2.3-mxrfprlpjsw7plwqrrkpxlypfeismhme since r-testthat-3.0.1-ftdupxt5ovnv3ayczdhzley7rlgqrh6q failed
==> Warning: Skipping build of r-pkgbuild-1.2.0-c44ie4zw657b76fm4ew5y6iwucbtid7k since r-withr-2.4.2-zxmwovdknl4ofhk5lpug5fclb2f4uusc failed
==> Warning: Skipping build of r-fastmatch-1.1-0-wgxz52hmis3zty7ulvrd2z4powk7h6tr since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-rprojroot-2.0.2-oqcgpihekniw4grwwm6iqngt42zx62tk since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-desc-1.2.0-vpdqas2zjglx43vpzldbucfd2dkxhpks since r-rprojroot-2.0.2-oqcgpihekniw4grwwm6iqngt42zx62tk failed
==> Warning: Skipping build of r-prettyunits-1.1.1-if6ino5ratxxkwgcilmqlntq6saxen3t since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-praise-1.0.0-lxspnjhd4lai3rj3g6al6o53mq7q3noj since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-assertthat-0.2.1-e5nu5yxbca742mmxe4ngsh37sgzjtbsc since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-gmp-0.6-2-ksw4v67lnrw7mw2sg2vyjfjy43nfmfny since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-rmpfr-0.8-2-nfescq47puhmphbsvb33niyhuusjips3 since r-gmp-0.6-2-ksw4v67lnrw7mw2sg2vyjfjy43nfmfny failed
==> Warning: Skipping build of r-magrittr-2.0.1-bagxltcrvoof2326nsd6ctk7srve727a since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-tibble-3.1.5-ejh4hbsgen5fox5ikhnyb526x2bstx6d since r-magrittr-2.0.1-bagxltcrvoof2326nsd6ctk7srve727a failed
==> Warning: Skipping build of r-waldo-0.2.3-nvzu6j5sl4xu66ly44kfn2eyequp2b55 since r-tibble-3.1.5-ejh4hbsgen5fox5ikhnyb526x2bstx6d failed
==> Warning: Skipping build of r-rematch2-2.1.2-fcquca7kgwp56ermkpjg6qzzrl7e6haa since r-tibble-3.1.5-ejh4hbsgen5fox5ikhnyb526x2bstx6d failed
==> Warning: Skipping build of r-gensa-1.1.7-fopplmnel73oqn6qgp5ptcxuwaxzdxbc since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-coda-0.19-4-oavb2ii2bs62oieazhzsxqalnrwik5n7 since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-crayon-1.4.1-oebib5duroblw7btkhfazy73odikeipe since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-pillar-1.6.4-6ef4fa2pvtclffxm4rr7rnt6i6io73ya since r-crayon-1.4.1-oebib5duroblw7btkhfazy73odikeipe failed
==> Warning: Skipping build of r-diffobj-0.3.3-svfcasu2pgjawwitolmqembyod6kbs5i since r-crayon-1.4.1-oebib5duroblw7btkhfazy73odikeipe failed
==> Warning: Skipping build of r-brio-1.1.0-akvjqkvvem6wpibmq2hunyngyqb5zvji since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-nlme-3.1-153-s2f4avqim43a5rnkof5j7nwgia4b75kz since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-mgcv-1.8-38-ni5mgptmm3mrrjkm67u34pbfzagbrpy6 since r-nlme-3.1-153-s2f4avqim43a5rnkof5j7nwgia4b75kz failed
==> Warning: Skipping build of r-jsonlite-1.7.2-4y53q37zo5zmrc7nmqo3q52hfe3l26mw since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-combinat-0.0-8-lrotn33upza5e4c3a7tcja6k75o63dq4 since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-gridextra-2.3-jr3rakbvlg3doauzrkh7nhqkpdn6q3cn since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-nnet-7.3-14-um5s542yu5vlazxhgiebuxsv2of3sasm since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-plotrix-3.7-8-lyhjphshbn2kq3pwi3wqyaytiejpbeti since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-ellipsis-0.3.2-ys75xaazpv72ln75ezgbgc7q2llj4zcj since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-vctrs-0.3.8-zv57ofusd4xtdybberzbk3lhntsot4fc since r-ellipsis-0.3.2-ys75xaazpv72ln75ezgbgc7q2llj4zcj failed
==> Warning: Skipping build of r-lifecycle-1.0.1-nkdn4avwjnsdmwrqt6crzfyjhmmo5amb since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-pkgconfig-2.0.3-ymkoj7ujg2v6ht35utom4533y2ldrr3g since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-evaluate-0.14-fk74fwl4dwdrn2raoalrquh2rurp57ot since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-digest-0.6.28-unosuh7jnjbxvj4ypk3d6gqj627zfgpp since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-glue-1.4.2-paln62jixi4s5oqwx47fwvue73c4irey since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-cli-3.0.1-ga5bf2phfvjpyldd6szdlrfka56uhnf2 since r-glue-1.4.2-paln62jixi4s5oqwx47fwvue73c4irey failed
==> Warning: Skipping build of r-ps-1.5.0-vxdhmzpql2pviwbd6dlhgirfznqfrrj2 since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-processx-3.5.2-oaf7iwkacha73td4xivajenea3z7vgp3 since r-ps-1.5.0-vxdhmzpql2pviwbd6dlhgirfznqfrrj2 failed
==> Warning: Skipping build of r-callr-3.7.0-npyscaeyfwpmhav5jaj4tzime3xgy6yh since r-processx-3.5.2-oaf7iwkacha73td4xivajenea3z7vgp3 failed
==> Warning: Skipping build of r-utf8-1.1.4-2duoalfsbunwyclzgiiknq5ns6r5rned since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-corpcor-1.6.9-ubbbvuzfy6ltcz52ahysuoy4fnam5k3x since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-matrix-1.3-4-r3cv3g7e4rbjpu54oxtn36fqkknlp7bj since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-expm-0.999-6-l5uk4vdptmwv257z72s52xynyl3li3c5 since r-matrix-1.3-4-r3cv3g7e4rbjpu54oxtn36fqkknlp7bj failed
==> Warning: Skipping build of r-gtable-0.3.0-3ai2htgp6i6kzso2euokpugfkavi5mjh since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-rlang-0.4.12-pjevktkvogcj5nieno7fpaalzkuoeqfw since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-quadprog-1.5-8-azevwgd6bzu25dbkrnxf3esikep6erwg since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-scatterplot3d-0.3-41-hwyn4fvssitdcq7my2xbalv7wjy3gfzw since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-rstudioapi-0.13-jiiewy4etd5ng7osihz6oavs7zxiciav since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-gtools-3.8.2-rnjraoxq5pwfxbzq4wvwsnt46uquoa5d since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-r6-2.5.0-b3ar3cpb5zhsdyy6avrr4ic6hw53y7qf since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-mass-7.3-54-pmmwdmrvnwkbclok2ecllp5p7vtntbiu since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-viridislite-0.3.0-mzjnber6d5x6tff665vfg6akjnqhusha since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-labeling-0.4.2-p4pjxij7u3yfufbovmvg5ggveqqvh573 since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-rcolorbrewer-1.1-2-dqk4xodtaoii4g67royddbtzkz7ksqr4 since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-numderiv-2016.8-1.1-57wue3jiunkou7ngj4q5e4p5kdycobvd since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-lattice-0.20-44-zhivmcbxm5rdy4fhq5xebw2ddplo4vo5 since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-fansi-0.5.0-6en7nrrpcogv6utw52rwgoiinpvttl5h since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: AssertionError exception when releasing read lock for openjdk-11.0.12_7-a75f25zctkd65qs6k6k3deyegg5s7c6o:
==> Error: r-corhmm-2.6-3jxzoxtkihedwynb7mgl6vpxhykjp3c3: Package was not installed
==> Error: Installation request failed. Refer to reported errors for failing package(s).


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