List of Open Source Software which can be built on Fugaku
 |
Spack will be used to manage open source software packages on Fugaku.
Fugaku users can easily use pre-installed packages and built packages based on Spack recipes.
The following list shows the results of building/compiling packages for aarch64 according to the Spack recipes.
Note that the results in this list do not guarantee that each package will work properly.
On the other hand, Fujitsu will provide the following packages compiled with Fujitsu compiler on Fugaku as "external" packages, of which Spack can be aware.
|
r-exomecopy 1.36.0
| Compiler | Fujitsu Compiler 4.7.0 |
|---|---|
| Result | Dependency Error |
Failed Reason
Failed to install dependency package :
------------------------------------------------
==> Warning: openjdk-11.0.12_7-a75f25zctkd65qs6k6k3deyegg5s7c6o failed to install
==> Warning: Skipping build of r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd since openjdk-11.0.12_7-a75f25zctkd65qs6k6k3deyegg5s7c6o failed
==> Warning: Skipping build of r-lambda-r-1.2.4-zwmlt55p3b6tgv2prsmgojuv5f67sm3a since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-futile-logger-1.4.3-rryohpdaguj4f5knujmauoztccczppgu since r-lambda-r-1.2.4-zwmlt55p3b6tgv2prsmgojuv5f67sm3a failed
==> Warning: Skipping build of r-biocparallel-1.24.1-qvbkuowbn32dhn7ezem5yccbgxddq47l since r-futile-logger-1.4.3-rryohpdaguj4f5knujmauoztccczppgu failed
==> Warning: Skipping build of r-rsamtools-2.6.0-uysjkhvzsljfjpwq272eum33qdoskwhu since r-biocparallel-1.24.1-qvbkuowbn32dhn7ezem5yccbgxddq47l failed
==> Warning: Skipping build of r-exomecopy-1.36.0-lifp4yjn3bkwbduyfoowco3yvr7qzvtn since r-rsamtools-2.6.0-uysjkhvzsljfjpwq272eum33qdoskwhu failed
==> Warning: Skipping build of r-rcurl-1.98-1.2-ihfxrq7nhfv4p7fkaum7pjdf32tda6ga since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-genomeinfodb-1.26.2-mxuc2xuyclh5ytnoeaquyjppoyeykf35 since r-rcurl-1.98-1.2-ihfxrq7nhfv4p7fkaum7pjdf32tda6ga failed
==> Warning: Skipping build of r-genomicranges-1.42.0-yet6dx6csctowmjbzito3kxyw3w4sg36 since r-genomeinfodb-1.26.2-mxuc2xuyclh5ytnoeaquyjppoyeykf35 failed
==> Warning: Skipping build of r-rhtslib-1.22.0-kpa2gstbwkmfkhpxwasvvqdkuhbb5jxo since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-futile-options-1.0.1-o46fmp4o4kocjgvaxlokybrmorh4nk5l since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-iranges-2.24.1-nioprmvtgwxd4dy2esrbtdxppxaa4xcz since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-xvector-0.30.0-on35ndurs3qy4qibfzsyp3yxhstrwnip since r-iranges-2.24.1-nioprmvtgwxd4dy2esrbtdxppxaa4xcz failed
==> Warning: Skipping build of r-biostrings-2.58.0-plpulhkzzn5yfoywr7xdbx34x4xx3xhr since r-xvector-0.30.0-on35ndurs3qy4qibfzsyp3yxhstrwnip failed
==> Warning: Skipping build of r-formatr-1.7-gywjikfj5dc4vm3ivr6gjfebg53zcxio since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-biocgenerics-0.36.0-t7umcmsxli26dcatnfajusvw2iq7iwxn since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-s4vectors-0.28.1-5bxtahmit5cuxriily6em3eomlmf6pin since r-biocgenerics-0.36.0-t7umcmsxli26dcatnfajusvw2iq7iwxn failed
==> Warning: Skipping build of r-snow-0.4-3-kivuxvl7ctiy6swglgtzr3zwpmlmhvty since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-bh-1.72.0-3-il7lwc5yielc6znge3j7mjx6ccvfc6m7 since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-bitops-1.0-6-biw3arsxxqsurcidocpejdhvzs4fx27p since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-genomeinfodbdata-1.2.1-34jleow3dp4zxvlcxeecg2wuosnojqzs since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-crayon-1.4.1-oebib5duroblw7btkhfazy73odikeipe since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-zlibbioc-1.36.0-sdvwjc64hrf6l35wghdowhacglg5fxcz since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: AssertionError exception when releasing read lock for openjdk-11.0.12_7-a75f25zctkd65qs6k6k3deyegg5s7c6o:
==> Error: r-exomecopy-1.36.0-lifp4yjn3bkwbduyfoowco3yvr7qzvtn: Package was not installed
==> Error: Installation request failed. Refer to reported errors for failing package(s).
[+] /usr (external bzip2-1.0.6-pkyqs6czmr636ktska3fpjek77reodry)
[+] /usr (external curl-7.61.1-s5ho6wv4jx7d2f2vj27fvdaok5ajslfc)
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/gnuconfig-2021-08-14-ezyvb3gy7i726n45kwb44a4vxle3if3i
[+] /vol0003/rccs-sdt/a01008/opt/python/3.9.9/fj (external python-3.9.9-3wcip6atrybofsb566d7pjqwhl76u4dp)
[+] /usr (external ncurses-6.1-qbvus6vwvtyxe33hxq4hbpazkrpy6ctb)
[+] /usr (external pcre2-10.32-2v5oqubg7f5kjsxdijjldrqpmdiocf76)
[+] /usr (external readline-7.0-776innbqk3ca64hss3u4zvuh46f5xe4y)
[+] /usr (external xz-5.2.4-ur7otl6tq7yv3vijsn6wu2nnvot443ku)
[+] /usr (external zlib-1.2.11-o3hvygtdcp6vg3bpvsrurq4hgklwtype)
[+] /usr (external gettext-0.19.8.1-seu57rrlbvdvq4fllw4fy75gelcj4jsh)
[+] /usr (external perl-5.26.3-cfeod657avcbjzlstrxizeulrdfnqb3r)
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/icu4c-67.1-hmdff6tgajfx4xdxnlafitauesya5c64
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/texinfo-6.5-dqgnoe2tyqkmtth6epsjkfp5uwgwvtwz
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/gmake-4.3-tihkaag6lmrhygdnlg7k47nfzh6dtujp
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