List of Open Source Software which can be built on Fugaku

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Spack will be used to manage open source software packages on Fugaku. Fugaku users can easily use pre-installed packages and built packages based on Spack recipes. The following list shows the results of building/compiling packages for aarch64 according to the Spack recipes. Note that the results in this list do not guarantee that each package will work properly. On the other hand, Fujitsu will provide the following packages compiled with Fujitsu compiler on Fugaku as "external" packages, of which Spack can be aware.
  • OpenJDK 11
  • Ruby 2.6.5 or later
  • Python2 2.7.15
  • Python3 3.6.8
  • Numpy 1.14.3
  • SciPy 1.0.0
  • Eclipse IDE 2019-09 R Packages
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r-oligoclasses 1.52.0

Compiler Fujitsu Compiler 4.7.0
Result Dependency Error

Failed Reason

Failed to install dependency package :
------------------------------------------------
[+] /usr (external bzip2-1.0.6-pkyqs6czmr636ktska3fpjek77reodry)
[+] /usr (external curl-7.61.1-s5ho6wv4jx7d2f2vj27fvdaok5ajslfc)
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/gnuconfig-2021-08-14-ezyvb3gy7i726n45kwb44a4vxle3if3i
[+] /vol0003/rccs-sdt/a01008/opt/python/3.9.9/fj (external python-3.9.9-3wcip6atrybofsb566d7pjqwhl76u4dp)
[+] /usr (external ncurses-6.1-qbvus6vwvtyxe33hxq4hbpazkrpy6ctb)
==> Installing openjdk-11.0.12_7-a75f25zctkd65qs6k6k3deyegg5s7c6o
==> No binary for openjdk-11.0.12_7-a75f25zctkd65qs6k6k3deyegg5s7c6o found: installing from source
==> Using cached archive: /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/var/spack/cache/_source-cache/archive/10/105bdc12fcd54c551e8e8ac96bc82412467244c32063689c41cee29ceb7452a2.tar.gz
==> No patches needed for openjdk
==> openjdk: Executing phase: 'install'
==> Error: PermissionError: [Errno 13] Permission denied: '/vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/openjdk-11.0.12_7-a75f25zctkd65qs6k6k3deyegg5s7c6o/legal/jdk.crypto.ec/ecc.md'

/vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/var/spack/repos/builtin/packages/openjdk/package.py:144, in install:
142 def install(self, spec, prefix):
143 top_dir = 'Contents/Home/' if platform.system() == "Darwin" else '.'
>> 144 install_tree(top_dir, prefix)

See build log for details:
/home/rccs-sdt/a01008/spack-stage/spack-stage-openjdk-11.0.12_7-a75f25zctkd65qs6k6k3deyegg5s7c6o/spack-build-out.txt

==> Warning: Skipping build of r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd since openjdk-11.0.12_7-a75f25zctkd65qs6k6k3deyegg5s7c6o failed
==> Warning: Skipping build of r-rsqlite-2.2.2-3cd4kmq6xzlyhcb4b3ugib2arse26ccl since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-oligoclasses-1.52.0-43vrn5n4yin6gytbwrdtsn7va43jelok since r-rsqlite-2.2.2-3cd4kmq6xzlyhcb4b3ugib2arse26ccl failed
==> Warning: Skipping build of r-matrixgenerics-1.2.1-q7bzh4ufdajhr33sqnvze5jv2smljfg3 since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-delayedarray-0.16.1-jz7uqywx7r6akhy6fovva2w5t6dmqqvj since r-matrixgenerics-1.2.1-q7bzh4ufdajhr33sqnvze5jv2smljfg3 failed
==> Warning: Skipping build of r-summarizedexperiment-1.20.0-5qtuptrjxt7hm5q32dmlavmi6d7mhtwa since r-delayedarray-0.16.1-jz7uqywx7r6akhy6fovva2w5t6dmqqvj failed
==> Warning: Skipping build of r-codetools-0.2-18-2ofjyjdurwih4k3frtj6gbharxh56uit since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-foreach-1.5.1-efkw6cddc37vfnirmkxfxnhsj7xd6px3 since r-codetools-0.2-18-2ofjyjdurwih4k3frtj6gbharxh56uit failed
==> Warning: Skipping build of r-genomeinfodbdata-1.2.1-34jleow3dp4zxvlcxeecg2wuosnojqzs since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-genomeinfodb-1.26.2-mxuc2xuyclh5ytnoeaquyjppoyeykf35 since r-genomeinfodbdata-1.2.1-34jleow3dp4zxvlcxeecg2wuosnojqzs failed
==> Warning: Skipping build of r-genomicranges-1.42.0-yet6dx6csctowmjbzito3kxyw3w4sg36 since r-genomeinfodb-1.26.2-mxuc2xuyclh5ytnoeaquyjppoyeykf35 failed
==> Warning: Skipping build of r-ff-4.0.4-3mceysemojspy4w4kszxeuskfz4radun since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-iranges-2.24.1-nioprmvtgwxd4dy2esrbtdxppxaa4xcz since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-biostrings-2.58.0-plpulhkzzn5yfoywr7xdbx34x4xx3xhr since r-iranges-2.24.1-nioprmvtgwxd4dy2esrbtdxppxaa4xcz failed
==> Warning: Skipping build of r-xvector-0.30.0-on35ndurs3qy4qibfzsyp3yxhstrwnip since r-iranges-2.24.1-nioprmvtgwxd4dy2esrbtdxppxaa4xcz failed
==> Warning: Skipping build of r-dbi-1.1.0-3ijzulqcsr37zu6pham4s5ntsaehrgox since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-affyio-1.60.0-xbgaqrfhe3aw6ghoabusxbtwcxe26owt since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-rcurl-1.98-1.2-ihfxrq7nhfv4p7fkaum7pjdf32tda6ga since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-iterators-1.0.13-flp2oiigjw3knmhezehvnnd7dfvfjcqd since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-matrix-1.3-4-r3cv3g7e4rbjpu54oxtn36fqkknlp7bj since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-rlang-0.4.12-pjevktkvogcj5nieno7fpaalzkuoeqfw since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-vctrs-0.3.8-zv57ofusd4xtdybberzbk3lhntsot4fc since r-rlang-0.4.12-pjevktkvogcj5nieno7fpaalzkuoeqfw failed
==> Warning: Skipping build of r-blob-1.2.1-k4jwfghag5vhruqspe7v4vypflsrrr2q since r-vctrs-0.3.8-zv57ofusd4xtdybberzbk3lhntsot4fc failed
==> Warning: Skipping build of r-ellipsis-0.3.2-ys75xaazpv72ln75ezgbgc7q2llj4zcj since r-rlang-0.4.12-pjevktkvogcj5nieno7fpaalzkuoeqfw failed
==> Warning: Skipping build of r-biocmanager-1.30.10-eu6hjmqgupu2cfupnyoaep75mprsaeu7 since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-rcpp-1.0.7-n2ruao7tr3cg6mabmekhqzwq6doyosx7 since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-plogr-0.2.0-vmham4mahj2tqsfnjiixqzqd2dpdnnyj since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-bitops-1.0-6-biw3arsxxqsurcidocpejdhvzs4fx27p since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-bit64-4.0.5-qdummkzvwml4u4gffwfl2kqjlu55gh6g since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-digest-0.6.28-unosuh7jnjbxvj4ypk3d6gqj627zfgpp since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-memoise-1.1.0-sd4mu7nqv6avp2ki3ksl2un7btxvxvgf since r-digest-0.6.28-unosuh7jnjbxvj4ypk3d6gqj627zfgpp failed
==> Warning: Skipping build of r-bh-1.72.0-3-il7lwc5yielc6znge3j7mjx6ccvfc6m7 since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-pkgconfig-2.0.3-ymkoj7ujg2v6ht35utom4533y2ldrr3g since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-biocgenerics-0.36.0-t7umcmsxli26dcatnfajusvw2iq7iwxn since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-biobase-2.50.0-k22ss54hmg34ngzo5t4swdk6fopzreis since r-biocgenerics-0.36.0-t7umcmsxli26dcatnfajusvw2iq7iwxn failed
==> Warning: Skipping build of r-s4vectors-0.28.1-5bxtahmit5cuxriily6em3eomlmf6pin since r-biocgenerics-0.36.0-t7umcmsxli26dcatnfajusvw2iq7iwxn failed
==> Warning: Skipping build of r-crayon-1.4.1-oebib5duroblw7btkhfazy73odikeipe since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-lattice-0.20-44-zhivmcbxm5rdy4fhq5xebw2ddplo4vo5 since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-bit-4.0.4-zkwzjlyap5kmgvoogf6zkoavtfxforlm since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-glue-1.4.2-paln62jixi4s5oqwx47fwvue73c4irey since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-matrixstats-0.61.0-hejlwgzjrzlugmbbuv3vtc5bdb3kix7z since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-zlibbioc-1.36.0-sdvwjc64hrf6l35wghdowhacglg5fxcz since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Error: r-oligoclasses-1.52.0-43vrn5n4yin6gytbwrdtsn7va43jelok: Package was not installed
==> Error: Installation request failed. Refer to reported errors for failing package(s).
[+] /usr (external pcre2-10.32-2v5oqubg7f5kjsxdijjldrqpmdiocf76)
[+] /usr (external readline-7.0-776innbqk3ca64hss3u4zvuh46f5xe4y)
[+] /usr (external xz-5.2.4-ur7otl6tq7yv3vijsn6wu2nnvot443ku)
[+] /usr (external zlib-1.2.11-o3hvygtdcp6vg3bpvsrurq4hgklwtype)
[+] /usr (external gettext-0.19.8.1-seu57rrlbvdvq4fllw4fy75gelcj4jsh)
[+] /usr (external perl-5.26.3-cfeod657avcbjzlstrxizeulrdfnqb3r)
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/icu4c-67.1-hmdff6tgajfx4xdxnlafitauesya5c64
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/texinfo-6.5-dqgnoe2tyqkmtth6epsjkfp5uwgwvtwz
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/gmake-4.3-tihkaag6lmrhygdnlg7k47nfzh6dtujp


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