List of Open Source Software which can be built on Fugaku

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Spack will be used to manage open source software packages on Fugaku. Fugaku users can easily use pre-installed packages and built packages based on Spack recipes. The following list shows the results of building/compiling packages for aarch64 according to the Spack recipes. Note that the results in this list do not guarantee that each package will work properly. On the other hand, Fujitsu will provide the following packages compiled with Fujitsu compiler on Fugaku as "external" packages, of which Spack can be aware.
  • OpenJDK 11
  • Ruby 2.6.5 or later
  • Python2 2.7.15
  • Python3 3.6.8
  • Numpy 1.14.3
  • SciPy 1.0.0
  • Eclipse IDE 2019-09 R Packages
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r-pbkrtest 0.5.1

Compiler Fujitsu Compiler 4.7.0
Result Dependency Error

Failed Reason

Failed to install dependency package :
------------------------------------------------
[+] /usr (external bzip2-1.0.6-pkyqs6czmr636ktska3fpjek77reodry)
[+] /usr (external curl-7.61.1-s5ho6wv4jx7d2f2vj27fvdaok5ajslfc)
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/gnuconfig-2021-08-14-ezyvb3gy7i726n45kwb44a4vxle3if3i
[+] /vol0003/rccs-sdt/a01008/opt/python/3.9.9/fj (external python-3.9.9-3wcip6atrybofsb566d7pjqwhl76u4dp)
[+] /usr (external ncurses-6.1-qbvus6vwvtyxe33hxq4hbpazkrpy6ctb)
==> Installing openjdk-11.0.12_7-a75f25zctkd65qs6k6k3deyegg5s7c6o
==> No binary for openjdk-11.0.12_7-a75f25zctkd65qs6k6k3deyegg5s7c6o found: installing from source
==> Using cached archive: /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/var/spack/cache/_source-cache/archive/10/105bdc12fcd54c551e8e8ac96bc82412467244c32063689c41cee29ceb7452a2.tar.gz
==> No patches needed for openjdk
==> openjdk: Executing phase: 'install'
==> Error: PermissionError: [Errno 13] Permission denied: '/vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/openjdk-11.0.12_7-a75f25zctkd65qs6k6k3deyegg5s7c6o/legal/jdk.crypto.ec/ecc.md'

/vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/var/spack/repos/builtin/packages/openjdk/package.py:144, in install:
142 def install(self, spec, prefix):
143 top_dir = 'Contents/Home/' if platform.system() == "Darwin" else '.'
>> 144 install_tree(top_dir, prefix)

See build log for details:
/home/rccs-sdt/a01008/spack-stage/spack-stage-openjdk-11.0.12_7-a75f25zctkd65qs6k6k3deyegg5s7c6o/spack-build-out.txt

[+] /usr (external pcre2-10.32-2v5oqubg7f5kjsxdijjldrqpmdiocf76)
[+] /usr (external readline-7.0-776innbqk3ca64hss3u4zvuh46f5xe4y)
[+] /usr (external xz-5.2.4-ur7otl6tq7yv3vijsn6wu2nnvot443ku)
[+] /usr (external zlib-1.2.11-o3hvygtdcp6vg3bpvsrurq4hgklwtype)
[+] /usr (external gettext-0.19.8.1-seu57rrlbvdvq4fllw4fy75gelcj4jsh)
[+] /usr (external perl-5.26.3-cfeod657avcbjzlstrxizeulrdfnqb3r)
[+] /opt/FJSVxtclanga/tcsds-latest (external fujitsu-ssl2-head-qa7iyj5emttingfmlg3424h3vekiviw3)
[+] /usr (external automake-1.16.1-gbketv7wv244mk5mkf65hyjxew4yocxo)
[+] /usr (external pcre-8.42-ubt55iodsyy4jsmwgjpm7otqpdrrpgt2)
[+] /usr (external pkgconf-1.4.2-x2r3t6jrikcoqgyvulfa2xm3cgearc2z)
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/py-setuptools-58.2.0-nwtt7d5cczfaezzecmrcr4swo63tvrg2
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/icu4c-67.1-hmdff6tgajfx4xdxnlafitauesya5c64
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/cmake-3.21.4-vgsk3aw6j4szlnkzjz3u57u7qtoosnkz
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/texinfo-6.5-dqgnoe2tyqkmtth6epsjkfp5uwgwvtwz
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/swig-4.0.2-fscqhexdv3m4dy7xycwmjs3nibvrsows
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/py-cython-0.29.24-rmuycsh3hdsfbp3ffdahdadzgeju5kfs
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/gmake-4.3-tihkaag6lmrhygdnlg7k47nfzh6dtujp
==> Installing py-numpy-1.21.3-eopspnavmocj2cziofoszo4vonyhfseh
==> No binary for py-numpy-1.21.3-eopspnavmocj2cziofoszo4vonyhfseh found: installing from source
==> Warning: Skipping build of r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd since openjdk-11.0.12_7-a75f25zctkd65qs6k6k3deyegg5s7c6o failed
==> Warning: Skipping build of r-purrr-0.3.4-dybd526kmmldimhslvozfwodc6rrww4j since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-tidyr-1.1.4-olnpiumfclb7jhkvxzu23dabisedzipo since r-purrr-0.3.4-dybd526kmmldimhslvozfwodc6rrww4j failed
==> Warning: Skipping build of r-broom-0.7.10-2hi255kt3rwtgp5crsmoemkormlcareh since r-tidyr-1.1.4-olnpiumfclb7jhkvxzu23dabisedzipo failed
==> Warning: Skipping build of r-pbkrtest-0.5.1-2ibuqwf4m5g44w3pzzjvcophfh6edaop since r-broom-0.7.10-2hi255kt3rwtgp5crsmoemkormlcareh failed
==> Warning: Skipping build of r-tidyselect-1.1.1-5e66d5aceimfjcz3uggvebkhbc4nflnj since r-purrr-0.3.4-dybd526kmmldimhslvozfwodc6rrww4j failed
==> Warning: Skipping build of r-dplyr-1.0.7-amtbxfyqctwavqw62445ctoxrg7xkaia since r-tidyselect-1.1.1-5e66d5aceimfjcz3uggvebkhbc4nflnj failed
==> Warning: Skipping build of r-gtable-0.3.0-3ai2htgp6i6kzso2euokpugfkavi5mjh since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-ggplot2-3.3.5-56eivbcpt7q5eqey5fjagmohreh26i3f since r-gtable-0.3.0-3ai2htgp6i6kzso2euokpugfkavi5mjh failed
==> Warning: Skipping build of r-backports-1.2.1-o3omorjxacoirawyuxnryxjozzbzolmo since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-cli-3.0.1-ga5bf2phfvjpyldd6szdlrfka56uhnf2 since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-pkgload-1.1.0-slxc5rmo4eljayiryt7sopppderxupg5 since r-cli-3.0.1-ga5bf2phfvjpyldd6szdlrfka56uhnf2 failed
==> Warning: Skipping build of r-testthat-3.0.1-ftdupxt5ovnv3ayczdhzley7rlgqrh6q since r-pkgload-1.1.0-slxc5rmo4eljayiryt7sopppderxupg5 failed
==> Warning: Skipping build of r-isoband-0.2.3-mxrfprlpjsw7plwqrrkpxlypfeismhme since r-testthat-3.0.1-ftdupxt5ovnv3ayczdhzley7rlgqrh6q failed
==> Warning: Skipping build of r-waldo-0.2.3-nvzu6j5sl4xu66ly44kfn2eyequp2b55 since r-cli-3.0.1-ga5bf2phfvjpyldd6szdlrfka56uhnf2 failed
==> Warning: Skipping build of r-pillar-1.6.4-6ef4fa2pvtclffxm4rr7rnt6i6io73ya since r-cli-3.0.1-ga5bf2phfvjpyldd6szdlrfka56uhnf2 failed
==> Warning: Skipping build of r-tibble-3.1.5-ejh4hbsgen5fox5ikhnyb526x2bstx6d since r-pillar-1.6.4-6ef4fa2pvtclffxm4rr7rnt6i6io73ya failed
==> Warning: Skipping build of r-rematch2-2.1.2-fcquca7kgwp56ermkpjg6qzzrl7e6haa since r-tibble-3.1.5-ejh4hbsgen5fox5ikhnyb526x2bstx6d failed
==> Warning: Skipping build of r-pkgbuild-1.2.0-c44ie4zw657b76fm4ew5y6iwucbtid7k since r-cli-3.0.1-ga5bf2phfvjpyldd6szdlrfka56uhnf2 failed
==> Warning: Skipping build of r-withr-2.4.2-zxmwovdknl4ofhk5lpug5fclb2f4uusc since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-lattice-0.20-44-zhivmcbxm5rdy4fhq5xebw2ddplo4vo5 since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-lme4-1.1-27.1-wvxiixlbgbqxbkt4oxdv3alvesknrcru since r-lattice-0.20-44-zhivmcbxm5rdy4fhq5xebw2ddplo4vo5 failed
==> Warning: Skipping build of r-nlme-3.1-153-s2f4avqim43a5rnkof5j7nwgia4b75kz since r-lattice-0.20-44-zhivmcbxm5rdy4fhq5xebw2ddplo4vo5 failed
==> Warning: Skipping build of r-mgcv-1.8-38-ni5mgptmm3mrrjkm67u34pbfzagbrpy6 since r-nlme-3.1-153-s2f4avqim43a5rnkof5j7nwgia4b75kz failed
==> Warning: Skipping build of r-matrix-1.3-4-r3cv3g7e4rbjpu54oxtn36fqkknlp7bj since r-lattice-0.20-44-zhivmcbxm5rdy4fhq5xebw2ddplo4vo5 failed
==> Warning: Skipping build of r-rcppeigen-0.3.3.9.1-3kop4oscqobc7whtiz7omujnxrx6d4bg since r-matrix-1.3-4-r3cv3g7e4rbjpu54oxtn36fqkknlp7bj failed
==> Warning: Skipping build of r-boot-1.3-28-u2wvkcarrv5aoptz3zqozlhp3c4g36l2 since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-utf8-1.1.4-2duoalfsbunwyclzgiiknq5ns6r5rned since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-diffobj-0.3.3-svfcasu2pgjawwitolmqembyod6kbs5i since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-fansi-0.5.0-6en7nrrpcogv6utw52rwgoiinpvttl5h since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-markdown-1.1-a7jfdyulaypp4ddqlyc5jx7ccmsm5eim since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-knitr-1.33-zqiunnirktrbfv4qht44vym6rk26gwua since r-markdown-1.1-a7jfdyulaypp4ddqlyc5jx7ccmsm5eim failed
==> Warning: Skipping build of r-callr-3.7.0-npyscaeyfwpmhav5jaj4tzime3xgy6yh since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-stringi-1.6.2-tkt6pnil4qdlrfv3txbg4g4mvifdlzhm since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-stringr-1.4.0-4no6s6xonrl4lmljs2wyra6qdrbz4opa since r-stringi-1.6.2-tkt6pnil4qdlrfv3txbg4g4mvifdlzhm failed
==> Warning: Skipping build of r-xfun-0.24-jqty4fbsro4qmzzkoddpimcmasctt6ac since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-highr-0.9-4legt4haobvncyv44xcxrgf56jazegbv since r-xfun-0.24-jqty4fbsro4qmzzkoddpimcmasctt6ac failed
==> Warning: Skipping build of r-cpp11-0.4.0-ipzrb5buh52in7gxyzdcohznbp5jib2n since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-pkgconfig-2.0.3-ymkoj7ujg2v6ht35utom4533y2ldrr3g since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-lifecycle-1.0.1-nkdn4avwjnsdmwrqt6crzfyjhmmo5amb since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-scales-1.1.1-p7fehdy6ehoaqqiivq5g3g5jjrrawgmy since r-lifecycle-1.0.1-nkdn4avwjnsdmwrqt6crzfyjhmmo5amb failed
==> Warning: Skipping build of r-labeling-0.4.2-p4pjxij7u3yfufbovmvg5ggveqqvh573 since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-glue-1.4.2-paln62jixi4s5oqwx47fwvue73c4irey since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-vctrs-0.3.8-zv57ofusd4xtdybberzbk3lhntsot4fc since r-glue-1.4.2-paln62jixi4s5oqwx47fwvue73c4irey failed
==> Warning: Skipping build of r-desc-1.2.0-vpdqas2zjglx43vpzldbucfd2dkxhpks since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-generics-0.1.1-eyov5vq47cjbrz2haq4d4rvr4ualzvzf since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-ellipsis-0.3.2-ys75xaazpv72ln75ezgbgc7q2llj4zcj since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-rcolorbrewer-1.1-2-dqk4xodtaoii4g67royddbtzkz7ksqr4 since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-praise-1.0.0-lxspnjhd4lai3rj3g6al6o53mq7q3noj since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-mass-7.3-54-pmmwdmrvnwkbclok2ecllp5p7vtntbiu since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-rlang-0.4.12-pjevktkvogcj5nieno7fpaalzkuoeqfw since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-digest-0.6.28-unosuh7jnjbxvj4ypk3d6gqj627zfgpp since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-rprojroot-2.0.2-oqcgpihekniw4grwwm6iqngt42zx62tk since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-brio-1.1.0-akvjqkvvem6wpibmq2hunyngyqb5zvji since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-viridislite-0.3.0-mzjnber6d5x6tff665vfg6akjnqhusha since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-minqa-1.2.4-cjall5qoclq6xnxurc6vvqgwxfbki4er since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-farver-2.1.0-fkjunclvnzkvxfd5etm6tvepcx57ky3r since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-rstudioapi-0.13-jiiewy4etd5ng7osihz6oavs7zxiciav since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-mime-0.11-v5qd2ubzfdnz625peuyjrqgjeiqsk7z3 since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-ps-1.5.0-vxdhmzpql2pviwbd6dlhgirfznqfrrj2 since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-processx-3.5.2-oaf7iwkacha73td4xivajenea3z7vgp3 since r-ps-1.5.0-vxdhmzpql2pviwbd6dlhgirfznqfrrj2 failed
==> Warning: Skipping build of r-magrittr-2.0.1-bagxltcrvoof2326nsd6ctk7srve727a since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-r6-2.5.0-b3ar3cpb5zhsdyy6avrr4ic6hw53y7qf since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-crayon-1.4.1-oebib5duroblw7btkhfazy73odikeipe since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-colorspace-2.0-0-2awls42ciwhfkvr6ftxwwix5nkdpk7jm since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-munsell-0.5.0-cqfcagu5rjlz24u7bshygm74ufelr6zp since r-colorspace-2.0-0-2awls42ciwhfkvr6ftxwwix5nkdpk7jm failed
==> Warning: Skipping build of r-jsonlite-1.7.2-4y53q37zo5zmrc7nmqo3q52hfe3l26mw since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-numderiv-2016.8-1.1-57wue3jiunkou7ngj4q5e4p5kdycobvd since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-yaml-2.2.1-4ilo3z3qffri4p44rxqalgiaz36o7ziz since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-rcpp-1.0.7-n2ruao7tr3cg6mabmekhqzwq6doyosx7 since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-prettyunits-1.1.1-if6ino5ratxxkwgcilmqlntq6saxen3t since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-nloptr-1.2.2.2-i5vonah2wpt2asxvrzjv2jednd2pxovt since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-evaluate-0.14-fk74fwl4dwdrn2raoalrquh2rurp57ot since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-assertthat-0.2.1-e5nu5yxbca742mmxe4ngsh37sgzjtbsc since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Using cached archive: /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/var/spack/cache/_source-cache/archive/63/63571bb7897a584ca3249c86dd01c10bcb5fe4296e3568b2e9c1a55356b6410e.zip
==> Applied patch /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/var/spack/repos/builtin/packages/py-numpy/check_executables.patch
==> py-numpy: Executing phase: 'build'
==> Error: ProcessError: Command exited with status 1:
'/vol0003/rccs-sdt/a01008/opt/python/3.9.9/fj/bin/python3.9' '-s' 'setup.py' '--no-user-cfg' 'build'
See build log for details:
/home/rccs-sdt/a01008/spack-stage/spack-stage-py-numpy-1.21.3-eopspnavmocj2cziofoszo4vonyhfseh/spack-build-out.txt

==> Warning: Skipping build of nlopt-2.7.0-45pjt4bjezpaqu6dlxw6ocob4hbe63qy since py-numpy-1.21.3-eopspnavmocj2cziofoszo4vonyhfseh failed
==> Error: r-pbkrtest-0.5.1-2ibuqwf4m5g44w3pzzjvcophfh6edaop: Package was not installed
==> Error: Installation request failed. Refer to reported errors for failing package(s).


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