List of Open Source Software which can be built on Fugaku

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Spack will be used to manage open source software packages on Fugaku. Fugaku users can easily use pre-installed packages and built packages based on Spack recipes. The following list shows the results of building/compiling packages for aarch64 according to the Spack recipes. Note that the results in this list do not guarantee that each package will work properly. On the other hand, Fujitsu will provide the following packages compiled with Fujitsu compiler on Fugaku as "external" packages, of which Spack can be aware.
  • OpenJDK 11
  • Ruby 2.6.5 or later
  • Python2 2.7.15
  • Python3 3.6.8
  • Numpy 1.14.3
  • SciPy 1.0.0
  • Eclipse IDE 2019-09 R Packages
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r-phylobase 0.8.10

Compiler Fujitsu Compiler 4.7.0
Result Dependency Error

Failed Reason

Failed to install dependency package :
------------------------------------------------
[+] /usr (external bzip2-1.0.6-pkyqs6czmr636ktska3fpjek77reodry)
[+] /usr (external curl-7.61.1-s5ho6wv4jx7d2f2vj27fvdaok5ajslfc)
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/gnuconfig-2021-08-14-ezyvb3gy7i726n45kwb44a4vxle3if3i
[+] /vol0003/rccs-sdt/a01008/opt/python/3.9.9/fj (external python-3.9.9-3wcip6atrybofsb566d7pjqwhl76u4dp)
[+] /usr (external ncurses-6.1-qbvus6vwvtyxe33hxq4hbpazkrpy6ctb)
==> Installing openjdk-11.0.12_7-a75f25zctkd65qs6k6k3deyegg5s7c6o
==> No binary for openjdk-11.0.12_7-a75f25zctkd65qs6k6k3deyegg5s7c6o found: installing from source
==> Warning: using "openssl@1.1.1g" which is a deprecated version
==> Using cached archive: /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/var/spack/cache/_source-cache/archive/10/105bdc12fcd54c551e8e8ac96bc82412467244c32063689c41cee29ceb7452a2.tar.gz
==> No patches needed for openjdk
==> openjdk: Executing phase: 'install'
==> Error: PermissionError: [Errno 13] Permission denied: '/vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/openjdk-11.0.12_7-a75f25zctkd65qs6k6k3deyegg5s7c6o/legal/jdk.crypto.ec/ecc.md'

/vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/var/spack/repos/builtin/packages/openjdk/package.py:144, in install:
142 def install(self, spec, prefix):
143 top_dir = 'Contents/Home/' if platform.system() == "Darwin" else '.'
>> 144 install_tree(top_dir, prefix)

See build log for details:
/home/rccs-sdt/a01008/spack-stage/spack-stage-openjdk-11.0.12_7-a75f25zctkd65qs6k6k3deyegg5s7c6o/spack-build-out.txt

==> Warning: Skipping build of r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd since openjdk-11.0.12_7-a75f25zctkd65qs6k6k3deyegg5s7c6o failed
==> Warning: Skipping build of r-vctrs-0.3.8-zv57ofusd4xtdybberzbk3lhntsot4fc since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-tibble-3.1.5-ejh4hbsgen5fox5ikhnyb526x2bstx6d since r-vctrs-0.3.8-zv57ofusd4xtdybberzbk3lhntsot4fc failed
==> Warning: Skipping build of r-tidyr-1.1.4-olnpiumfclb7jhkvxzu23dabisedzipo since r-tibble-3.1.5-ejh4hbsgen5fox5ikhnyb526x2bstx6d failed
==> Warning: Skipping build of r-rnexml-2.4.5-laigf65rc22wx6koxtio7ubvhe4ihxtj since r-tidyr-1.1.4-olnpiumfclb7jhkvxzu23dabisedzipo failed
==> Warning: Skipping build of r-phylobase-0.8.10-2xjiakyrzj5fn5fp7kr73ikfigdwsod5 since r-rnexml-2.4.5-laigf65rc22wx6koxtio7ubvhe4ihxtj failed
==> Warning: Skipping build of r-dplyr-1.0.7-amtbxfyqctwavqw62445ctoxrg7xkaia since r-tibble-3.1.5-ejh4hbsgen5fox5ikhnyb526x2bstx6d failed
==> Warning: Skipping build of r-tidyselect-1.1.1-5e66d5aceimfjcz3uggvebkhbc4nflnj since r-vctrs-0.3.8-zv57ofusd4xtdybberzbk3lhntsot4fc failed
==> Warning: Skipping build of r-pillar-1.6.4-6ef4fa2pvtclffxm4rr7rnt6i6io73ya since r-vctrs-0.3.8-zv57ofusd4xtdybberzbk3lhntsot4fc failed
==> Warning: Skipping build of r-hms-1.1.1-xgpp5unyng4nvcrmm5i3ynjtxdwlg6sr since r-vctrs-0.3.8-zv57ofusd4xtdybberzbk3lhntsot4fc failed
==> Warning: Skipping build of r-progress-1.2.2-bmcpxajzshrbacyrebp6upu3ci7whpoe since r-hms-1.1.1-xgpp5unyng4nvcrmm5i3ynjtxdwlg6sr failed
==> Warning: Skipping build of r-rncl-0.8.4-h6vzrpsn532gatua5vdnbk5qxdwewygf since r-progress-1.2.2-bmcpxajzshrbacyrebp6upu3ci7whpoe failed
==> Warning: Skipping build of r-ade4-1.7-16-75y6ihkkavissep7eeoqh5ljzswesibw since r-progress-1.2.2-bmcpxajzshrbacyrebp6upu3ci7whpoe failed
==> Warning: Skipping build of r-fansi-0.5.0-6en7nrrpcogv6utw52rwgoiinpvttl5h since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-curl-4.3.2-xfku7crkji62d4sabdd3vnywdu2qd77k since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-httr-1.4.2-tsw2c7xsdgd747t2f5lp44nhmr6ehcnp since r-curl-4.3.2-xfku7crkji62d4sabdd3vnywdu2qd77k failed
==> Warning: Skipping build of r-cpp11-0.4.0-ipzrb5buh52in7gxyzdcohznbp5jib2n since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-xml2-1.3.2-lfbyyzbckcjmkcc775mmxekxbhpewdcp since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-ape-5.4-1-2bmndcukdtikbg6ju2pxx4vudzirtg5k since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-lazyeval-0.2.2-x5qtw3eqp7tlkfmffmrnn37oodiop7q6 since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-stringr-1.4.0-4no6s6xonrl4lmljs2wyra6qdrbz4opa since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-reshape2-1.4.4-ecwkzjm2jtwfdh4ui2pgthtbp3i4tqyt since r-stringr-1.4.0-4no6s6xonrl4lmljs2wyra6qdrbz4opa failed
==> Warning: Skipping build of r-crayon-1.4.1-oebib5duroblw7btkhfazy73odikeipe since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-mime-0.11-v5qd2ubzfdnz625peuyjrqgjeiqsk7z3 since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-openssl-1.4.5-wr2tzw6recxc5oashlj4t2t6zujbf2eu since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-mass-7.3-54-pmmwdmrvnwkbclok2ecllp5p7vtntbiu since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-nlme-3.1-153-s2f4avqim43a5rnkof5j7nwgia4b75kz since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-rlang-0.4.12-pjevktkvogcj5nieno7fpaalzkuoeqfw since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-lifecycle-1.0.1-nkdn4avwjnsdmwrqt6crzfyjhmmo5amb since r-rlang-0.4.12-pjevktkvogcj5nieno7fpaalzkuoeqfw failed
==> Warning: Skipping build of r-purrr-0.3.4-dybd526kmmldimhslvozfwodc6rrww4j since r-rlang-0.4.12-pjevktkvogcj5nieno7fpaalzkuoeqfw failed
==> Warning: Skipping build of r-ellipsis-0.3.2-ys75xaazpv72ln75ezgbgc7q2llj4zcj since r-rlang-0.4.12-pjevktkvogcj5nieno7fpaalzkuoeqfw failed
==> Warning: Skipping build of r-uuid-0.1-4-vyozeoqmxmoxnywb2b6kurk4tx3ka2ii since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-glue-1.4.2-paln62jixi4s5oqwx47fwvue73c4irey since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-cli-3.0.1-ga5bf2phfvjpyldd6szdlrfka56uhnf2 since r-glue-1.4.2-paln62jixi4s5oqwx47fwvue73c4irey failed
==> Warning: Skipping build of r-magrittr-2.0.1-bagxltcrvoof2326nsd6ctk7srve727a since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-plyr-1.8.6-qzx7nyhwbp4wtfmsnlmdrezhxr35e2r4 since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-jsonlite-1.7.2-4y53q37zo5zmrc7nmqo3q52hfe3l26mw since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-askpass-1.1-6jl7s55kd67sekytrnoxna6fvbbjn3qd since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-sys-3.4-aar3xq7zdnbbqvinqyhozh6xgrakmlav since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-stringi-1.6.2-tkt6pnil4qdlrfv3txbg4g4mvifdlzhm since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-xml-3.99-0.5-oea33cpb5qdwxoiq2hbfbznax4ffudyi since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-sp-1.4-5-ji7hckkc5bv5sv6apcbf2ydpaa7icbcx since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-utf8-1.1.4-2duoalfsbunwyclzgiiknq5ns6r5rned since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-prettyunits-1.1.1-if6ino5ratxxkwgcilmqlntq6saxen3t since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-pixmap-0.4-11-yaz6iut6yy2nr3m3revy4ko5wuqd4uem since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-lattice-0.20-44-zhivmcbxm5rdy4fhq5xebw2ddplo4vo5 since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-r6-2.5.0-b3ar3cpb5zhsdyy6avrr4ic6hw53y7qf since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-generics-0.1.1-eyov5vq47cjbrz2haq4d4rvr4ualzvzf since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-pkgconfig-2.0.3-ymkoj7ujg2v6ht35utom4533y2ldrr3g since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Warning: Skipping build of r-rcpp-1.0.7-n2ruao7tr3cg6mabmekhqzwq6doyosx7 since r-4.1.1-eqbmww57u5e4ylih2laorzmlgirb54qd failed
==> Error: r-phylobase-0.8.10-2xjiakyrzj5fn5fp7kr73ikfigdwsod5: Package was not installed
==> Error: Installation request failed. Refer to reported errors for failing package(s).
[+] /usr (external pcre2-10.32-2v5oqubg7f5kjsxdijjldrqpmdiocf76)
[+] /usr (external readline-7.0-776innbqk3ca64hss3u4zvuh46f5xe4y)
[+] /usr (external xz-5.2.4-ur7otl6tq7yv3vijsn6wu2nnvot443ku)
[+] /usr (external zlib-1.2.11-o3hvygtdcp6vg3bpvsrurq4hgklwtype)
[+] /usr (external openssl-1.1.1g-dqzlhh5x3gd54fdshnsmluwmtatw7u6k)
[+] /usr (external libxml2-2.9.7-sjfhie7egvrddyaxgsplnop3zfbkkssb)
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/icu4c-67.1-hmdff6tgajfx4xdxnlafitauesya5c64


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