List of Open Source Software which can be built on Fugaku
 |
Spack will be used to manage open source software packages on Fugaku.
Fugaku users can easily use pre-installed packages and built packages based on Spack recipes.
The following list shows the results of building/compiling packages for aarch64 according to the Spack recipes.
Note that the results in this list do not guarantee that each package will work properly.
On the other hand, Fujitsu will provide the following packages compiled with Fujitsu compiler on Fugaku as "external" packages, of which Spack can be aware.
|
racon 1.4.3
| Compiler | Fujitsu Compiler 4.7.0 |
|---|---|
| Result | Dependency Error |
Failed Reason
Failed to install dependency package :
------------------------------------------------
[+] /usr (external ncurses-6.1-qbvus6vwvtyxe33hxq4hbpazkrpy6ctb)
[+] /vol0003/rccs-sdt/a01008/opt/python/3.9.9/fj (external python-3.9.9-3wcip6atrybofsb566d7pjqwhl76u4dp)
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/sse2neon-master-43xfuzzf54ktu6pwvlnvcvdudbt35mw2
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/cmake-3.21.4-vgsk3aw6j4szlnkzjz3u57u7qtoosnkz
==> Installing racon-1.4.3-ptmoorescxvizomevivme3fjnjn4q5j7
==> No binary for racon-1.4.3-ptmoorescxvizomevivme3fjnjn4q5j7 found: installing from source
==> Warning: Missing a source id for sse2neon@master
==> Using cached archive: /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/var/spack/cache/_source-cache/archive/df/dfce0bae8234c414ef72b690247701b4299e39a2593bcda548a7a864f51de7f2.tar.gz
==> Applied patch /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/var/spack/repos/builtin/packages/racon/aarch64.patch
==> racon: Executing phase: 'cmake'
==> racon: Executing phase: 'build'
==> Error: ProcessError: Command exited with status 2:
'make' '-j16'
12 errors found in build log:
110 [ 37%] Building C object vendor/bioparser/vendor/zlib/CMakeFiles/zl
ibstatic.dir/gzread.o
111 cd /vol0003/rccs-sdt/a01008/spack-stage/spack-stage-racon-1.4.3-ptm
oorescxvizomevivme3fjnjn4q5j7/spack-build-ptmoore/vendor/bioparser/
vendor/zlib && /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225
/spack/lib/spack/env/fj/fcc -D_LARGEFILE64_SOURCE=1 -I/home/rccs-sd
t/a01008/spack-stage/spack-stage-racon-1.4.3-ptmoorescxvizomevivme3
fjnjn4q5j7/spack-src/src -I/vol0003/rccs-sdt/a01008/spack-stage/spa
ck-stage-racon-1.4.3-ptmoorescxvizomevivme3fjnjn4q5j7/spack-build-p
tmoore/vendor/bioparser/vendor/zlib -I/home/rccs-sdt/a01008/spack-s
tage/spack-stage-racon-1.4.3-ptmoorescxvizomevivme3fjnjn4q5j7/spack
-src -O2 -g -DNDEBUG -MD -MT vendor/bioparser/vendor/zlib/CMakeFile
s/zlibstatic.dir/gzread.o -MF CMakeFiles/zlibstatic.dir/gzread.o.d
-o CMakeFiles/zlibstatic.dir/gzread.o -c /home/rccs-sdt/a01008/spac
k-stage/spack-stage-racon-1.4.3-ptmoorescxvizomevivme3fjnjn4q5j7/sp
ack-src/vendor/bioparser/vendor/zlib/gzread.c
112 [ 40%] Building C object vendor/bioparser/vendor/zlib/CMakeFiles/zl
ibstatic.dir/gzwrite.o
113 cd /vol0003/rccs-sdt/a01008/spack-stage/spack-stage-racon-1.4.3-ptm
oorescxvizomevivme3fjnjn4q5j7/spack-build-ptmoore/vendor/bioparser/
vendor/zlib && /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225
/spack/lib/spack/env/fj/fcc -D_LARGEFILE64_SOURCE=1 -I/home/rccs-sd
t/a01008/spack-stage/spack-stage-racon-1.4.3-ptmoorescxvizomevivme3
fjnjn4q5j7/spack-src/src -I/vol0003/rccs-sdt/a01008/spack-stage/spa
ck-stage-racon-1.4.3-ptmoorescxvizomevivme3fjnjn4q5j7/spack-build-p
tmoore/vendor/bioparser/vendor/zlib -I/home/rccs-sdt/a01008/spack-s
tage/spack-stage-racon-1.4.3-ptmoorescxvizomevivme3fjnjn4q5j7/spack
-src -O2 -g -DNDEBUG -MD -MT vendor/bioparser/vendor/zlib/CMakeFile
s/zlibstatic.dir/gzwrite.o -MF CMakeFiles/zlibstatic.dir/gzwrite.o.
d -o CMakeFiles/zlibstatic.dir/gzwrite.o -c /home/rccs-sdt/a01008/s
pack-stage/spack-stage-racon-1.4.3-ptmoorescxvizomevivme3fjnjn4q5j7
/spack-src/vendor/bioparser/vendor/zlib/gzwrite.c
114 [ 43%] Building C object vendor/bioparser/vendor/zlib/CMakeFiles/zl
ibstatic.dir/inflate.o
115 cd /vol0003/rccs-sdt/a01008/spack-stage/spack-stage-racon-1.4.3-ptm
oorescxvizomevivme3fjnjn4q5j7/spack-build-ptmoore/vendor/bioparser/
vendor/zlib && /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225
/spack/lib/spack/env/fj/fcc -D_LARGEFILE64_SOURCE=1 -I/home/rccs-sd
t/a01008/spack-stage/spack-stage-racon-1.4.3-ptmoorescxvizomevivme3
fjnjn4q5j7/spack-src/src -I/vol0003/rccs-sdt/a01008/spack-stage/spa
ck-stage-racon-1.4.3-ptmoorescxvizomevivme3fjnjn4q5j7/spack-build-p
tmoore/vendor/bioparser/vendor/zlib -I/home/rccs-sdt/a01008/spack-s
tage/spack-stage-racon-1.4.3-ptmoorescxvizomevivme3fjnjn4q5j7/spack
-src -O2 -g -DNDEBUG -MD -MT vendor/bioparser/vendor/zlib/CMakeFile
s/zlibstatic.dir/inflate.o -MF CMakeFiles/zlibstatic.dir/inflate.o.
d -o CMakeFiles/zlibstatic.dir/inflate.o -c /home/rccs-sdt/a01008/s
pack-stage/spack-stage-racon-1.4.3-ptmoorescxvizomevivme3fjnjn4q5j7
/spack-src/vendor/bioparser/vendor/zlib/inflate.c
>> 116 clang-7: error: the clang compiler does not support '-march=native'
>> 117 make[2]: *** [vendor/spoa/CMakeFiles/spoa.dir/build.make:79: vendor
/spoa/CMakeFiles/spoa.dir/src/alignment_engine.cpp.o] Error 1
118 make[2]: *** Waiting for unfinished jobs....
>> 119 clang-7: error: the clang compiler does not support '-march=native'
>> 120 make[2]: *** [vendor/spoa/CMakeFiles/spoa.dir/build.make:93: vendor
/spoa/CMakeFiles/spoa.dir/src/graph.cpp.o] Error 1
>> 121 clang-7: error: the clang compiler does not support '-march=native'
>> 122 make[2]: *** [vendor/spoa/CMakeFiles/spoa.dir/build.make:107: vendo
r/spoa/CMakeFiles/spoa.dir/src/simd_alignment_engine.cpp.o] Error 1
>> 123 clang-7: error: the clang compiler does not support '-march=native'
>> 124 make[2]: *** [vendor/thread_pool/CMakeFiles/thread_pool.dir/build.m
ake:79: vendor/thread_pool/CMakeFiles/thread_pool.dir/src/thread_po
ol.cpp.o] Error 1
125 make[2]: Leaving directory '/vol0003/rccs-sdt/a01008/spack-stage/sp
ack-stage-racon-1.4.3-ptmoorescxvizomevivme3fjnjn4q5j7/spack-build-
ptmoore'
>> 126 make[1]: *** [CMakeFiles/Makefile2:428: vendor/thread_pool/CMakeFil
es/thread_pool.dir/all] Error 2
127 make[1]: *** Waiting for unfinished jobs....
>> 128 clang-7: error: the clang compiler does not support '-march=native'
>> 129 make[2]: *** [vendor/spoa/CMakeFiles/spoa.dir/build.make:121: vendo
r/spoa/CMakeFiles/spoa.dir/src/sisd_alignment_engine.cpp.o] Error 1
130 make[2]: Leaving directory '/vol0003/rccs-sdt/a01008/spack-stage/sp
ack-stage-racon-1.4.3-ptmoorescxvizomevivme3fjnjn4q5j7/spack-build-
ptmoore'
>> 131 make[1]: *** [CMakeFiles/Makefile2:402: vendor/spoa/CMakeFiles/spoa
.dir/all] Error 2
132 [ 45%] Building C object vendor/bioparser/vendor/zlib/CMakeFiles/zl
ibstatic.dir/infback.o
133 cd /vol0003/rccs-sdt/a01008/spack-stage/spack-stage-racon-1.4.3-ptm
oorescxvizomevivme3fjnjn4q5j7/spack-build-ptmoore/vendor/bioparser/
vendor/zlib && /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225
/spack/lib/spack/env/fj/fcc -D_LARGEFILE64_SOURCE=1 -I/home/rccs-sd
t/a01008/spack-stage/spack-stage-racon-1.4.3-ptmoorescxvizomevivme3
fjnjn4q5j7/spack-src/src -I/vol0003/rccs-sdt/a01008/spack-stage/spa
ck-stage-racon-1.4.3-ptmoorescxvizomevivme3fjnjn4q5j7/spack-build-p
tmoore/vendor/bioparser/vendor/zlib -I/home/rccs-sdt/a01008/spack-s
tage/spack-stage-racon-1.4.3-ptmoorescxvizomevivme3fjnjn4q5j7/spack
-src -O2 -g -DNDEBUG -MD -MT vendor/bioparser/vendor/zlib/CMakeFile
s/zlibstatic.dir/infback.o -MF CMakeFiles/zlibstatic.dir/infback.o.
d -o CMakeFiles/zlibstatic.dir/infback.o -c /home/rccs-sdt/a01008/s
pack-stage/spack-stage-racon-1.4.3-ptmoorescxvizomevivme3fjnjn4q5j7
/spack-src/vendor/bioparser/vendor/zlib/infback.c
134 [ 48%] Building C object vendor/bioparser/vendor/zlib/CMakeFiles/zl
ibstatic.dir/inftrees.o
135 cd /vol0003/rccs-sdt/a01008/spack-stage/spack-stage-racon-1.4.3-ptm
oorescxvizomevivme3fjnjn4q5j7/spack-build-ptmoore/vendor/bioparser/
vendor/zlib && /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225
/spack/lib/spack/env/fj/fcc -D_LARGEFILE64_SOURCE=1 -I/home/rccs-sd
t/a01008/spack-stage/spack-stage-racon-1.4.3-ptmoorescxvizomevivme3
fjnjn4q5j7/spack-src/src -I/vol0003/rccs-sdt/a01008/spack-stage/spa
ck-stage-racon-1.4.3-ptmoorescxvizomevivme3fjnjn4q5j7/spack-build-p
tmoore/vendor/bioparser/vendor/zlib -I/home/rccs-sdt/a01008/spack-s
tage/spack-stage-racon-1.4.3-ptmoorescxvizomevivme3fjnjn4q5j7/spack
-src -O2 -g -DNDEBUG -MD -MT vendor/bioparser/vendor/zlib/CMakeFile
s/zlibstatic.dir/inftrees.o -MF CMakeFiles/zlibstatic.dir/inftrees.
o.d -o CMakeFiles/zlibstatic.dir/inftrees.o -c /home/rccs-sdt/a0100
8/spack-stage/spack-stage-racon-1.4.3-ptmoorescxvizomevivme3fjnjn4q
5j7/spack-src/vendor/bioparser/vendor/zlib/inftrees.c
136 [ 51%] Building C object vendor/bioparser/vendor/zlib/CMakeFiles/zl
ibstatic.dir/inffast.o
137 cd /vol0003/rccs-sdt/a01008/spack-stage/spack-stage-racon-1.4.3-ptm
oorescxvizomevivme3fjnjn4q5j7/spack-build-ptmoore/vendor/bioparser/
vendor/zlib && /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225
/spack/lib/spack/env/fj/fcc -D_LARGEFILE64_SOURCE=1 -I/home/rccs-sd
t/a01008/spack-stage/spack-stage-racon-1.4.3-ptmoorescxvizomevivme3
fjnjn4q5j7/spack-src/src -I/vol0003/rccs-sdt/a01008/spack-stage/spa
ck-stage-racon-1.4.3-ptmoorescxvizomevivme3fjnjn4q5j7/spack-build-p
tmoore/vendor/bioparser/vendor/zlib -I/home/rccs-sdt/a01008/spack-s
tage/spack-stage-racon-1.4.3-ptmoorescxvizomevivme3fjnjn4q5j7/spack
-src -O2 -g -DNDEBUG -MD -MT vendor/bioparser/vendor/zlib/CMakeFile
s/zlibstatic.dir/inffast.o -MF CMakeFiles/zlibstatic.dir/inffast.o.
d -o CMakeFiles/zlibstatic.dir/inffast.o -c /home/rccs-sdt/a01008/s
pack-stage/spack-stage-racon-1.4.3-ptmoorescxvizomevivme3fjnjn4q5j7
/spack-src/vendor/bioparser/vendor/zlib/inffast.c
See build log for details:
/home/rccs-sdt/a01008/spack-stage/spack-stage-racon-1.4.3-ptmoorescxvizomevivme3fjnjn4q5j7/spack-build-out.txt
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