Failed Reason

Failed to install dependency package :
------------------------------------------------
1252 /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/lib/spa
ck/env/fj/fcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k
-pthread -fopenmp -O2 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -
D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -
D_THREAD_SAFE -I/vol0003/rccs-sdt/a01008/spack-stage/spack-stage-n
cbi-rmblastn-2.11.0-m67m2kvjd6ypgi45utehtqxvyf62qfel/spack-src/c++
/ReleaseMT/inc -I/vol0003/rccs-sdt/a01008/spack-stage/spack-stage-
ncbi-rmblastn-2.11.0-m67m2kvjd6ypgi45utehtqxvyf62qfel/spack-src/c+
+/include -DNCBI_BUILD_SESSION_ID=c261ad04-127f-4951-8ef8-9f1f4b3
b4e0a ncbicfg.c -o ncbicfg.o
1253 /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/lib/spa
ck/env/fj/case-insensitive/FCC -std=gnu++14 -c -Wall -Wno-format
-y2k -pthread -fopenmp -O2 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE
-D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT
-D_THREAD_SAFE -I/vol0003/rccs-sdt/a01008/spack-stage/spack-stage
-ncbi-rmblastn-2.11.0-m67m2kvjd6ypgi45utehtqxvyf62qfel/spack-src/c
++/ReleaseMT/inc -I/vol0003/rccs-sdt/a01008/spack-stage/spack-stag
e-ncbi-rmblastn-2.11.0-m67m2kvjd6ypgi45utehtqxvyf62qfel/spack-src/
c++/include -DNCBI_BUILD_SESSION_ID=c261ad04-127f-4951-8ef8-9f1f4
b3b4e0a /vol0003/rccs-sdt/a01008/spack-stage/spack-stage-ncbi-rmbl
astn-2.11.0-m67m2kvjd6ypgi45utehtqxvyf62qfel/spack-src/c++/src/cor
elib/ncbidbg.cpp -o ncbidbg.o
>> 1254 /vol0003/rccs-sdt/a01008/spack-stage/spack-stage-ncbi-rmblastn-2.1
1.0-m67m2kvjd6ypgi45utehtqxvyf62qfel/spack-src/c++/src/corelib/ncb
i_system.cpp:1554:36: error: invalid output constraint '=a' in asm
1255 asm volatile("cpuid" : "=a" (r[0]), "=b" (r[1]), "=c"
(r[2]), "=d" (r[3]) : "a" (func_id));
1256 ^
>> 1257 /vol0003/rccs-sdt/a01008/spack-stage/spack-stage-ncbi-rmblastn-2.1
1.0-m67m2kvjd6ypgi45utehtqxvyf62qfel/spack-src/c++/src/corelib/ncb
i_system.cpp:1561:36: error: invalid output constraint '=a' in asm
1258 asm volatile("cpuid" : "=a" (r[0]), "=b" (r[1]), "=c"
(r[2]), "=d" (r[3]) : "a" (func_id), "c" (sub_id));
1259 ^
1260 /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/lib/spa
ck/env/fj/case-insensitive/FCC -std=gnu++14 -c -Wall -Wno-format
-y2k -pthread -fopenmp -O2 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE
-D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT
-D_THREAD_SAFE -I/vol0003/rccs-sdt/a01008/spack-stage/spack-stage
-ncbi-rmblastn-2.11.0-m67m2kvjd6ypgi45utehtqxvyf62qfel/spack-src/c
++/ReleaseMT/inc -I/vol0003/rccs-sdt/a01008/spack-stage/spack-stag
e-ncbi-rmblastn-2.11.0-m67m2kvjd6ypgi45utehtqxvyf62qfel/spack-src/
c++/include -DNCBI_BUILD_SESSION_ID=c261ad04-127f-4951-8ef8-9f1f4
b3b4e0a /vol0003/rccs-sdt/a01008/spack-stage/spack-stage-ncbi-rmbl
astn-2.11.0-m67m2kvjd6ypgi45utehtqxvyf62qfel/spack-src/c++/src/cor
elib/ncbidiag.cpp -o ncbidiag.o
1261 /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/lib/spa
ck/env/fj/case-insensitive/FCC -std=gnu++14 -c -Wall -Wno-format
-y2k -pthread -fopenmp -O2 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE
-D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT
-D_THREAD_SAFE -I/vol0003/rccs-sdt/a01008/spack-stage/spack-stage
-ncbi-rmblastn-2.11.0-m67m2kvjd6ypgi45utehtqxvyf62qfel/spack-src/c
++/ReleaseMT/inc -I/vol0003/rccs-sdt/a01008/spack-stage/spack-stag
e-ncbi-rmblastn-2.11.0-m67m2kvjd6ypgi45utehtqxvyf62qfel/spack-src/
c++/include -DNCBI_BUILD_SESSION_ID=c261ad04-127f-4951-8ef8-9f1f4
b3b4e0a /vol0003/rccs-sdt/a01008/spack-stage/spack-stage-ncbi-rmbl
astn-2.11.0-m67m2kvjd6ypgi45utehtqxvyf62qfel/spack-src/c++/src/cor
elib/ncbidiag_p.cpp -o ncbidiag_p.o
1262 2 errors generated.
>> 1263 make[4]: *** [/vol0003/rccs-sdt/a01008/spack-stage/spack-stage-ncb
i-rmblastn-2.11.0-m67m2kvjd6ypgi45utehtqxvyf62qfel/spack-src/c++/R
eleaseMT/build/Makefile.rules:88: ncbi_system.o] Error 1
1264 make[4]: *** Waiting for unfinished jobs....
1265 /vol0003/rccs-sdt/a01008/spack-stage/spack-stage-ncbi-rmblastn-2.1
1.0-m67m2kvjd6ypgi45utehtqxvyf62qfel/spack-src/c++/src/corelib/ncb
idiag.cpp:873:20: warning: 'GetProperties' is deprecated [-Wdeprec
ated-declarations]
1266 value->GetProperties(CDiagContextThreadData::eProp_Get
); /* NCBI_FAKE_WARNING */
1267 ^
1268 /vol0003/rccs-sdt/a01008/spack-stage/spack-stage-ncbi-rmblastn-2.1
1.0-m67m2kvjd6ypgi45utehtqxvyf62qfel/spack-src/c++/include/corelib
/ncbidiag.hpp:1819:5: note: 'GetProperties' has been explicitly ma
rked deprecated here
1269 NCBI_DEPRECATED TProperties* GetProperties(EGetProperties flag
);

...

1285 ^
1286 /vol0003/rccs-sdt/a01008/spack-stage/spack-stage-ncbi-rmblastn-2.1
1.0-m67m2kvjd6ypgi45utehtqxvyf62qfel/spack-src/c++/include/common/
ncbiconf_impl.h:122:56: note: expanded from macro 'NCBI_LEGACY_DEP
RECATED_0'
1287 # define NCBI_LEGACY_DEPRECATED_0 __attribute__((deprecated)
)
1288 ^
1289 2 warnings generated.
1290 make[4]: Leaving directory '/vol0003/rccs-sdt/a01008/spack-stage/s
pack-stage-ncbi-rmblastn-2.11.0-m67m2kvjd6ypgi45utehtqxvyf62qfel/s
pack-src/c++/ReleaseMT/build/corelib'
>> 1291 FAILED: src/corelib/Makefile.corelib.lib
1292 make[4]: Entering directory '/vol0003/rccs-sdt/a01008/spack-stage/
spack-stage-ncbi-rmblastn-2.11.0-m67m2kvjd6ypgi45utehtqxvyf62qfel/
spack-src/c++/ReleaseMT/build/corelib'
1293 make[4]: warning: -jN forced in submake: disabling jobserver mode.
1294 /bin/rm -f libxncbi.a .xncbi.dep .libxncbi.a.stamp
1295 /bin/rm -f /vol0003/rccs-sdt/a01008/spack-stage/spack-stage-ncbi-r
mblastn-2.11.0-m67m2kvjd6ypgi45utehtqxvyf62qfel/spack-src/c++/Rele
aseMT/lib/libxncbi.a /vol0003/rccs-sdt/a01008/spack-stage/spack-st
age-ncbi-rmblastn-2.11.0-m67m2kvjd6ypgi45utehtqxvyf62qfel/spack-sr
c/c++/ReleaseMT/status/.xncbi.dep \
1296 /vol0003/rccs-sdt/a01008/spack-stage/spack-stage-ncbi-rmblastn
-2.11.0-m67m2kvjd6ypgi45utehtqxvyf62qfel/spack-src/c++/ReleaseMT/l
ib/libxncbi-static.a /vol0003/rccs-sdt/a01008/spack-stage/spack-st
age-ncbi-rmblastn-2.11.0-m67m2kvjd6ypgi45utehtqxvyf62qfel/spack-sr
c/c++/ReleaseMT/status/.xncbi-static.dep
1297 make[4]: Leaving directory '/vol0003/rccs-sdt/a01008/spack-stage/s
pack-stage-ncbi-rmblastn-2.11.0-m67m2kvjd6ypgi45utehtqxvyf62qfel/s
pack-src/c++/ReleaseMT/build/corelib'
>> 1298 make[3]: *** [/vol0003/rccs-sdt/a01008/spack-stage/spack-stage-ncb
i-rmblastn-2.11.0-m67m2kvjd6ypgi45utehtqxvyf62qfel/spack-src/c++/s
rc/build-system/Makefile.meta_l:323: all.nonusr] Error 2
1299 make[3]: Leaving directory '/vol0003/rccs-sdt/a01008/spack-stage/s
pack-stage-ncbi-rmblastn-2.11.0-m67m2kvjd6ypgi45utehtqxvyf62qfel/s
pack-src/c++/ReleaseMT/build/corelib'
>> 1300 make[2]: *** [/vol0003/rccs-sdt/a01008/spack-stage/spack-stage-ncb
i-rmblastn-2.11.0-m67m2kvjd6ypgi45utehtqxvyf62qfel/spack-src/c++/s
rc/build-system/Makefile.meta_l:281: all_l.real] Error 2
1301 make[2]: Leaving directory '/vol0003/rccs-sdt/a01008/spack-stage/s
pack-stage-ncbi-rmblastn-2.11.0-m67m2kvjd6ypgi45utehtqxvyf62qfel/s
pack-src/c++/ReleaseMT/build/corelib'
>> 1302 make[1]: *** [/vol0003/rccs-sdt/a01008/spack-stage/spack-stage-ncb
i-rmblastn-2.11.0-m67m2kvjd6ypgi45utehtqxvyf62qfel/spack-src/c++/s
rc/build-system/Makefile.meta_p:129: all_p.real] Error 5
1303 make[1]: Leaving directory '/vol0003/rccs-sdt/a01008/spack-stage/s
pack-stage-ncbi-rmblastn-2.11.0-m67m2kvjd6ypgi45utehtqxvyf62qfel/s
pack-src/c++/ReleaseMT/build'
1304 make: *** [Makefile:24: all] Error 2

See build log for details:
/home/rccs-sdt/a01008/spack-stage/spack-stage-ncbi-rmblastn-2.11.0-m67m2kvjd6ypgi45utehtqxvyf62qfel/spack-build-out.txt

[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/hdf5-1.10.7-e6qpgz6hrxhhxddnu4a2m6xxd4d5mawa
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/py-wheel-0.36.2-5dlv3xhtbj6yl7x5w254v7katxxp4aq2
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/py-mpi4py-3.1.2-z4eydgoy4ox7rqycg2zdlebpi5ghwtla
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/py-cython-0.29.24-rmuycsh3hdsfbp3ffdahdadzgeju5kfs
==> Installing py-numpy-1.21.3-eopspnavmocj2cziofoszo4vonyhfseh
==> No binary for py-numpy-1.21.3-eopspnavmocj2cziofoszo4vonyhfseh found: installing from source
==> Using cached archive: /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/var/spack/cache/_source-cache/archive/63/63571bb7897a584ca3249c86dd01c10bcb5fe4296e3568b2e9c1a55356b6410e.zip
==> Applied patch /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/var/spack/repos/builtin/packages/py-numpy/check_executables.patch
==> py-numpy: Executing phase: 'build'
==> Error: ProcessError: Command exited with status 1:
'/vol0003/rccs-sdt/a01008/opt/python/3.9.9/fj/bin/python3.9' '-s' 'setup.py' '--no-user-cfg' 'build'
See build log for details:
/home/rccs-sdt/a01008/spack-stage/spack-stage-py-numpy-1.21.3-eopspnavmocj2cziofoszo4vonyhfseh/spack-build-out.txt

==> Warning: Skipping build of py-h5py-3.4.0-pi4lkdtk5ilcmye3gxu6g5kyzm3qqs6s since py-numpy-1.21.3-eopspnavmocj2cziofoszo4vonyhfseh failed
==> Error: repeatmasker-4.1.2-p1-domikozw3us7v2zclksafaoioq5vwib4: Package was not installed
==> Error: Installation request failed. Refer to reported errors for failing package(s).