List of Open Source Software which can be built on Fugaku

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Spack will be used to manage open source software packages on Fugaku. Fugaku users can easily use pre-installed packages and built packages based on Spack recipes. The following list shows the results of building/compiling packages for aarch64 according to the Spack recipes. Note that the results in this list do not guarantee that each package will work properly. On the other hand, Fujitsu will provide the following packages compiled with Fujitsu compiler on Fugaku as "external" packages, of which Spack can be aware.
  • OpenJDK 11
  • Ruby 2.6.5 or later
  • Python2 2.7.15
  • Python3 3.6.8
  • Numpy 1.14.3
  • SciPy 1.0.0
  • Eclipse IDE 2019-09 R Packages
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repeatmodeler 1.0.11

Compiler Fujitsu Compiler 4.7.0
Result Dependency Error

Failed Reason

Failed to install dependency package :
------------------------------------------------
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/gnuconfig-2021-08-14-ezyvb3gy7i726n45kwb44a4vxle3if3i
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/nseg-1.0-x6sahcwyq4jkaupaffsqlxysintbzhfc
[+] /usr (external perl-5.26.3-cfeod657avcbjzlstrxizeulrdfnqb3r)
[+] /opt/FJSVxtclanga/tcsds-latest (external fujitsu-mpi-head-zlunfezjmwzq5pfrxkeb3tpfc6ja5cxz)
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/trf-4.09.1-epa6hcdlsor7dx6rt4nlxh2ts5zrk5xs
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/cpio-2.13-ncn6uzkeicj7kbn3i2grmdijvrv6cutf
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/perl-test-needs-0.002005-fomwipsyulnszcekvrrfoge6os2ix772
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/perl-module-build-0.4224-rffcqbqsimvmylgezexantsbf7l5ksta
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/perl-try-tiny-0.28-rkqyhd4ehu4jrmmz2cllhcuo5rq3z7o7
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/perl-json-2.97001-ymnewdf3i7glldggf5guhozzil57rem4
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/perl-io-html-1.001-3y3izin2wzuedxe2jzubjvoo3mf3qp6q
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/perl-text-soundex-3.05-d4wgpnhjbctufh4xmzeixlohdyvxqbu4
==> Installing recon-1.05-2nlmpav6jo6qar7nw2ilgq2oswoiaeey
==> No binary for recon-1.05-2nlmpav6jo6qar7nw2ilgq2oswoiaeey found: installing from source
==> Using cached archive: /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/var/spack/cache/_source-cache/archive/4d/4d4f76f439bcffd50380cffc41a80dc15fa4a80f38a04234e24da893ed7c025a.tar.gz
==> Applied patch /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/var/spack/repos/builtin/packages/recon/repeatmasker_recon.patch
==> recon: Executing phase: 'edit'
==> recon: Executing phase: 'build'
==> recon: Executing phase: 'install'
==> recon: Successfully installed recon-1.05-2nlmpav6jo6qar7nw2ilgq2oswoiaeey
Fetch: 0.01s. Build: 2.35s. Total: 2.36s.
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/recon-1.05-2nlmpav6jo6qar7nw2ilgq2oswoiaeey
==> Warning: hmmer-3.3.2-3o373tuseujhkz4n2ldr7nlfctmooh3d failed to install
==> Warning: Skipping build of repeatmasker-4.0.9-m2bljc6l7tsvont5a5wa324bvzv5bkak since hmmer-3.3.2-3o373tuseujhkz4n2ldr7nlfctmooh3d failed
==> Warning: Skipping build of repeatmodeler-1.0.11-fvc5sm7n4rscocjmjvkjvunjgjc3awqw since repeatmasker-4.0.9-m2bljc6l7tsvont5a5wa324bvzv5bkak failed
==> Warning: ncbi-rmblastn-2.11.0-m67m2kvjd6ypgi45utehtqxvyf62qfel failed to install
==> Error: repeatmodeler-1.0.11-fvc5sm7n4rscocjmjvkjvunjgjc3awqw: Package was not installed
==> Error: Installation request failed. Refer to reported errors for failing package(s).
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/perl-lwp-mediatypes-6.02-krqfe74y2iujqlxofa3vnmcyhyjur6hi
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/perl-http-date-6.02-4a6tbrg3vhecggcrcjfksr5nkuuo5627
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/perl-extutils-helpers-0.026-cr2bzoujgex7taicinj7i4bwkbz3t2jg
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/perl-extutils-config-0.008-vjw3pzgayy3ikuwjjjukghj67uf5cyqm
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/perl-html-tagset-3.20-7szqpuixsu7eabnv7y5qgktkibcug5bf
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/perl-encode-locale-1.05-oqn2es5c7afg7pbigdm7mt76dhp2mnn7
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/repeatscout-1.0.5-a6c2nebzjdq3sfn4jku2ez7s7d7wl4td
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/perl-uri-1.72-utk4xmfpghuhpwmjgvj7pn2eidy655zi
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/perl-file-listing-6.04-lwjzl2vzopw5qbychak5duok3cyq2uau
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/perl-extutils-installpaths-0.012-yryehacsbpqy4kihmos2zo22j37p5jil
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/perl-html-parser-3.72-ncenxhlnjvm3ux63e3ymtxjghmieayz2
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/perl-www-robotrules-6.02-64uu4wfzrl2mb4wnx262do2pxdznqex2
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/perl-net-http-6.17-n4fq4f4lymer5zfv4dmn3ynj7jeya3ic
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/perl-http-message-6.13-a6edzjbvchxd4nueh4scbt7d5wrff7j2
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/perl-module-build-tiny-0.039-wvxbrn25g33t4ndabqgerd524ljtan6q
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/perl-http-negotiate-6.01-ru6shlzxe2ujxhgxpsoo3pgfsfy2pnlx
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/perl-http-cookies-6.04-tfjryzzhufxclge62vd3qnzqdfxcvxmd
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/perl-http-daemon-6.01-qmz4jtoxtnuzkyhsptfdqkvpfmpwhklp
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/perl-libwww-perl-6.33-lofdgezogjxbbh35l3nlw4b7cs6vn336


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