List of Open Source Software which can be built on Fugaku

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Spack will be used to manage open source software packages on Fugaku. Fugaku users can easily use pre-installed packages and built packages based on Spack recipes. The following list shows the results of building/compiling packages for aarch64 according to the Spack recipes. Note that the results in this list do not guarantee that each package will work properly. On the other hand, Fujitsu will provide the following packages compiled with Fujitsu compiler on Fugaku as "external" packages, of which Spack can be aware.
  • OpenJDK 11
  • Ruby 2.6.5 or later
  • Python2 2.7.15
  • Python3 3.6.8
  • Numpy 1.14.3
  • SciPy 1.0.0
  • Eclipse IDE 2019-09 R Packages
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rnaz 2.1

Compiler Fujitsu Compiler 4.7.0
Result Dependency Error

Failed Reason

Failed to install dependency package :
------------------------------------------------
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/gnuconfig-2021-08-14-ezyvb3gy7i726n45kwb44a4vxle3if3i
==> Installing rnaz-2.1-xaiunonczs767cijzfp65weghstasrlj
==> No binary for rnaz-2.1-xaiunonczs767cijzfp65weghstasrlj found: installing from source
==> Fetching https://mirror.spack.io/_source-cache/archive/b3/b32ec0361889319f2058f224d6c456c853dbc30dff4dba90c53a8f9fd7b83be5.tar.gz
==> No patches needed for rnaz
==> rnaz: Executing phase: 'autoreconf'
==> rnaz: Executing phase: 'configure'
==> rnaz: Executing phase: 'build'
==> Error: ProcessError: Command exited with status 2:
'make' '-j16' 'V=1'

11 errors found in build log:
250 mv -f .deps/zscore.Tpo .deps/zscore.Po
251 2 warnings generated.
252 mv -f .deps/svm_helper.Tpo .deps/svm_helper.Po
253 mv -f .deps/svm.Tpo .deps/svm.Po
254 /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/lib/spac
k/env/fj/case-insensitive/FCC -o RNAz RNAz.o rnaz_utils.o svm_helpe
r.o zscore.o cmdline.o strand.o svm.o -L../librna -lRNA -lm
255 ../librna/libRNA.a(fold.o): In function `fill_arrays':
>> 256 /vol0003/rccs-sdt/a01008/spack-stage/spack-stage-rnaz-2.1-xaiunoncz
s767cijzfp65weghstasrlj/spack-src/librna/fold.c:263: undefined refe
rence to `HairpinE'
>> 257 /vol0003/rccs-sdt/a01008/spack-stage/spack-stage-rnaz-2.1-xaiunoncz
s767cijzfp65weghstasrlj/spack-src/librna/fold.c:284: undefined refe
rence to `LoopEnergy'
258 ../librna/libRNA.a(fold.o): In function `backtrack':
>> 259 /vol0003/rccs-sdt/a01008/spack-stage/spack-stage-rnaz-2.1-xaiunoncz
s767cijzfp65weghstasrlj/spack-src/librna/fold.c:655: undefined refe
rence to `HairpinE'
>> 260 /vol0003/rccs-sdt/a01008/spack-stage/spack-stage-rnaz-2.1-xaiunoncz
s767cijzfp65weghstasrlj/spack-src/librna/fold.c:672: undefined refe
rence to `LoopEnergy'
261 ../librna/libRNA.a(fold.o): In function `stack_energy':
>> 262 /vol0003/rccs-sdt/a01008/spack-stage/spack-stage-rnaz-2.1-xaiunoncz
s767cijzfp65weghstasrlj/spack-src/librna/fold.c:1048: undefined ref
erence to `LoopEnergy'
>> 263 /vol0003/rccs-sdt/a01008/spack-stage/spack-stage-rnaz-2.1-xaiunoncz
s767cijzfp65weghstasrlj/spack-src/librna/fold.c:1063: undefined ref
erence to `HairpinE'
264 ../librna/libRNA.a(alifold.o): In function `alifold':
>> 265 /vol0003/rccs-sdt/a01008/spack-stage/spack-stage-rnaz-2.1-xaiunoncz
s767cijzfp65weghstasrlj/spack-src/librna/alifold.c:186: undefined r
eference to `HairpinE'
>> 266 /vol0003/rccs-sdt/a01008/spack-stage/spack-stage-rnaz-2.1-xaiunoncz
s767cijzfp65weghstasrlj/spack-src/librna/alifold.c:203: undefined r
eference to `LoopEnergy'
>> 267 /vol0003/rccs-sdt/a01008/spack-stage/spack-stage-rnaz-2.1-xaiunoncz
s767cijzfp65weghstasrlj/spack-src/librna/alifold.c:479: undefined r
eference to `LoopEnergy'
>> 268 /vol0003/rccs-sdt/a01008/spack-stage/spack-stage-rnaz-2.1-xaiunoncz
s767cijzfp65weghstasrlj/spack-src/librna/alifold.c:465: undefined r
eference to `HairpinE'
>> 269 clang-7: error: linker command failed with exit code 1 (use -v to s
ee invocation)
270 make[2]: *** [Makefile:243: RNAz] Error 1
271 make[2]: Leaving directory '/vol0003/rccs-sdt/a01008/spack-stage/sp
ack-stage-rnaz-2.1-xaiunonczs767cijzfp65weghstasrlj/spack-src/rnaz'
272 make[1]: *** [Makefile:305: all-recursive] Error 1
273 make[1]: Leaving directory '/vol0003/rccs-sdt/a01008/spack-stage/sp
ack-stage-rnaz-2.1-xaiunonczs767cijzfp65weghstasrlj/spack-src'
274 make: *** [Makefile:223: all] Error 2

See build log for details:
/home/rccs-sdt/a01008/spack-stage/spack-stage-rnaz-2.1-xaiunonczs767cijzfp65weghstasrlj/spack-build-out.txt


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