List of Open Source Software which can be built on Fugaku
 |
Spack will be used to manage open source software packages on Fugaku.
Fugaku users can easily use pre-installed packages and built packages based on Spack recipes.
The following list shows the results of building/compiling packages for aarch64 according to the Spack recipes.
Note that the results in this list do not guarantee that each package will work properly.
On the other hand, Fujitsu will provide the following packages compiled with Fujitsu compiler on Fugaku as "external" packages, of which Spack can be aware.
|
sga 0.10.15
| Compiler | Fujitsu Compiler 4.7.0 |
|---|---|
| Result | Dependency Error |
Failed Reason
Failed to install dependency package :
------------------------------------------------
[+] /usr (external autoconf-2.69-me3qacnq6as2fvkhuiia2ks5udajax3b)
[+] /usr (external automake-1.16.1-gbketv7wv244mk5mkf65hyjxew4yocxo)
[+] /usr (external ncurses-6.1-qbvus6vwvtyxe33hxq4hbpazkrpy6ctb)
[+] /usr (external zlib-1.2.11-o3hvygtdcp6vg3bpvsrurq4hgklwtype)
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/gnuconfig-2021-08-14-ezyvb3gy7i726n45kwb44a4vxle3if3i
[+] /usr (external libtool-2.4.6-snb3wjzerg4q7w57akrhqlg2hfvalawy)
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/cmake-3.21.4-vgsk3aw6j4szlnkzjz3u57u7qtoosnkz
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/jemalloc-5.2.1-4zpuhftwb74oua3ucchjkecnxd7g2vre
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/sparsehash-2.0.4-zexb3mkdkjvgq7tbdkswa7zkzohr3at2
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/bamtools-2.5.1-e3khxbqz3c4po2qlo3hooehffiywlmfq
==> Installing sga-0.10.15-pov22jsahhtp7phzkf73rxvegjmeesjb
==> No binary for sga-0.10.15-pov22jsahhtp7phzkf73rxvegjmeesjb found: installing from source
==> Fetching https://mirror.spack.io/_source-cache/archive/1b/1b18996e6ec47985bc4889a8cbc3cd4dd3a8c7d385ae9f450bd474e36342558b.tar.gz
==> No patches needed for sga
==> sga: Executing phase: 'autoreconf'
==> sga: Executing phase: 'configure'
==> Error: ProcessError: Command exited with status 1:
'/vol0003/rccs-sdt/a01008/spack-stage/spack-stage-sga-0.10.15-pov22jsahhtp7phzkf73rxvegjmeesjb/spack-src/src/configure' '--prefix=/vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/sga-0.10.15-pov22jsahhtp7phzkf73rxvegjmeesjb' '--with-sparsehash=/vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/sparsehash-2.0.4-zexb3mkdkjvgq7tbdkswa7zkzohr3at2' '--with-bamtools=/vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/bamtools-2.5.1-e3khxbqz3c4po2qlo3hooehffiywlmfq' '--with-jemalloc=/vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/jemalloc-5.2.1-4zpuhftwb74oua3ucchjkecnxd7g2vre'
4 errors found in build log:
10 autoreconf: running: aclocal -I /usr/share/aclocal -I /usr/share/acl
ocal -I /usr/share/aclocal -I /usr/share/aclocal --force
11 autoreconf: configure.ac: tracing
12 autoreconf: configure.ac: not using Libtool
13 autoreconf: running: /usr/bin/autoconf --include=/usr/share/aclocal
--include=/usr/share/aclocal --include=/usr/share/aclocal --include=
/usr/share/aclocal --force
14 autoreconf: running: /usr/bin/autoheader --include=/usr/share/acloca
l --include=/usr/share/aclocal --include=/usr/share/aclocal --includ
e=/usr/share/aclocal --force
15 autoreconf: running: automake --add-missing --copy --force-missing
>> 16 configure.ac:12: installing './compile'
>> 17 configure.ac:5: installing './install-sh'
>> 18 configure.ac:5: installing './missing'
19 Algorithm/Makefile.am: installing './depcomp'
20 autoreconf: Leaving directory `.'
21 ==> sga: Executing phase: 'configure'
22 ==> [2022-03-25-12:04:03.246560] '/vol0003/rccs-sdt/a01008/spack-sta
ge/spack-stage-sga-0.10.15-pov22jsahhtp7phzkf73rxvegjmeesjb/spack-sr
c/src/configure' '--prefix=/vol0003/rccs-sdt/a01008/spack-all-test/e
nv-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/sga-0.10.15-p
ov22jsahhtp7phzkf73rxvegjmeesjb' '--with-sparsehash=/vol0003/rccs-sd
t/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64
fx/fj-4.7.0/sparsehash-2.0.4-zexb3mkdkjvgq7tbdkswa7zkzohr3at2' '--wi
th-bamtools=/vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spa
ck/opt/spack/linux-rhel8-a64fx/fj-4.7.0/bamtools-2.5.1-e3khxbqz3c4po
2qlo3hooehffiywlmfq' '--with-jemalloc=/vol0003/rccs-sdt/a01008/spack
-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/je
malloc-5.2.1-4zpuhftwb74oua3ucchjkecnxd7g2vre'
23 checking for a BSD-compatible install... /usr/bin/install -c
24 checking whether build environment is sane... yes
...
71 configure: WARNING: google/sparse_hash_set: section "Present But
Cannot Be Compiled"
72 configure: WARNING: google/sparse_hash_set: proceeding with the comp
iler's result
73 configure: WARNING: ## -------------------------------- ##
74 configure: WARNING: ## Report this to js18@sanger.ac.uk ##
75 configure: WARNING: ## -------------------------------- ##
76 checking for google/sparse_hash_set... no
>> 77 configure: error: google sparse hash library is required: http://cod
e.google.com/p/google-sparsehash/
See build log for details:
/home/rccs-sdt/a01008/spack-stage/spack-stage-sga-0.10.15-pov22jsahhtp7phzkf73rxvegjmeesjb/spack-build-out.txt
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