List of Open Source Software which can be built on Fugaku

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Spack will be used to manage open source software packages on Fugaku. Fugaku users can easily use pre-installed packages and built packages based on Spack recipes. The following list shows the results of building/compiling packages for aarch64 according to the Spack recipes. Note that the results in this list do not guarantee that each package will work properly. On the other hand, Fujitsu will provide the following packages compiled with Fujitsu compiler on Fugaku as "external" packages, of which Spack can be aware.
  • OpenJDK 11
  • Ruby 2.6.5 or later
  • Python2 2.7.15
  • Python3 3.6.8
  • Numpy 1.14.3
  • SciPy 1.0.0
  • Eclipse IDE 2019-09 R Packages
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slate 2021.05.02

Compiler Fujitsu Compiler 4.7.0
Result Dependency Error

Failed Reason

Failed to install dependency package :
------------------------------------------------
[+] /usr (external ncurses-6.1-qbvus6vwvtyxe33hxq4hbpazkrpy6ctb)
[+] /opt/FJSVxtclanga/tcsds-latest (external fujitsu-ssl2-head-qa7iyj5emttingfmlg3424h3vekiviw3)
[+] /opt/FJSVxtclanga/tcsds-latest (external fujitsu-mpi-head-zlunfezjmwzq5pfrxkeb3tpfc6ja5cxz)
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/cmake-3.21.4-vgsk3aw6j4szlnkzjz3u57u7qtoosnkz
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/blaspp-2021.04.01-42mbdrppzy6czxrtddqfxvbu2a6bh363
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/lapackpp-2021.04.00-qqixfcso4qrn7nxwzcvrwzhsldabqajg
==> Installing slate-2021.05.02-p7htmyncndh55qefmdtejgi36xusxdcb
==> No binary for slate-2021.05.02-p7htmyncndh55qefmdtejgi36xusxdcb found: installing from source
==> Fetching https://mirror.spack.io/_source-cache/archive/29/29667a9e869e41fbc22af1ae2bcd425d79b4094bbb3f21c411888e7adc5d12e3.tar.gz
==> No patches needed for slate
==> slate: Executing phase: 'cmake'
==> slate: Executing phase: 'build'
==> Error: ProcessError: Command exited with status 2:
'make' '-j16'

5 errors found in build log:
109 [ 17%] Building CXX object CMakeFiles/slate.dir/src/gesvd.cc.o
110 /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/lib/spac
k/env/fj/case-insensitive/FCC -DSLATE_NO_CUDA -DSLATE_NO_HIP -Dslat
e_EXPORTS -I/home/rccs-sdt/a01008/spack-stage/spack-stage-slate-202
1.05.02-p7htmyncndh55qefmdtejgi36xusxdcb/spack-src/include -I/home/
rccs-sdt/a01008/spack-stage/spack-stage-slate-2021.05.02-p7htmyncnd
h55qefmdtejgi36xusxdcb/spack-src/src -isystem /opt/FJSVxtclanga/.co
mmon/MECA026/include/mpi/fujitsu -isystem /vol0003/rccs-sdt/a01008/
spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.
7.0/blaspp-2021.04.01-42mbdrppzy6czxrtddqfxvbu2a6bh363/include -isy
stem /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt
/spack/linux-rhel8-a64fx/fj-4.7.0/lapackpp-2021.04.00-qqixfcso4qrn7
nxwzcvrwzhsldabqajg/include -O2 -g -DNDEBUG -fPIC -fopenmp -pthread
-std=c++17 -MD -MT CMakeFiles/slate.dir/src/gesvd.cc.o -MF CMakeFi
les/slate.dir/src/gesvd.cc.o.d -o CMakeFiles/slate.dir/src/gesvd.cc
.o -c /home/rccs-sdt/a01008/spack-stage/spack-stage-slate-2021.05.0
2-p7htmyncndh55qefmdtejgi36xusxdcb/spack-src/src/gesvd.cc
111 Stack dump:
112 0. Program arguments: /opt/FJSVxtclanga/tcsds-1.2.34/clang-comp/bin
/clang-7 -cc1 -triple aarch64-unknown-linux-gnu -emit-obj -disable-
free -disable-llvm-verifier -discard-value-names -main-file-name ge
mm.cc -mrelocation-model pic -pic-level 2 -mthread-model posix -mdi
sable-fp-elim -fmath-errno -masm-verbose -mconstructor-aliases -mun
wind-tables -fuse-init-array -target-cpu a64fx -mllvm -enable-prefe
tch-hpc-tag -target-feature +v8.2a -target-feature +fp-armv8 -targe
t-feature +neon -target-feature +crc -target-feature +crypto -targe
t-feature +ras -target-feature +lse -target-feature +rdm -target-fe
ature +sve -target-abi aapcs -mllvm -use-sve-vectorizer -fallow-hal
f-arguments-and-returns -ffj-line -dwarf-column-info -debug-info-ki
nd=limited -dwarf-version=4 -debugger-tuning=gdb -coverage-notes-fi
le /vol0003/rccs-sdt/a01008/spack-stage/spack-stage-slate-2021.05.0
2-p7htmyncndh55qefmdtejgi36xusxdcb/spack-build-p7htmyn/CMakeFiles/s
late.dir/src/gemm.cc.gcno -resource-dir /opt/FJSVxtclanga/tcsds-1.2
.34/clang-comp/lib64/clang/7.1.0 -dependency-file CMakeFiles/slate.
dir/src/gemm.cc.o.d -sys-header-deps -MT CMakeFiles/slate.dir/src/g
emm.cc.o -idirafter /opt/FJSVxtclanga/tcsds-latest/include -isystem
/opt/FJSVxtclanga/.common/MECA026/include/mpi/fujitsu -isystem /vo
l0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/l
inux-rhel8-a64fx/fj-4.7.0/blaspp-2021.04.01-42mbdrppzy6czxrtddqfxvb
u2a6bh363/include -isystem /vol0003/rccs-sdt/a01008/spack-all-test/
env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/lapackpp-20
21.04.00-qqixfcso4qrn7nxwzcvrwzhsldabqajg/include -isystem /vol0003
/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-
rhel8-a64fx/fj-4.7.0/lapackpp-2021.04.00-qqixfcso4qrn7nxwzcvrwzhsld
abqajg/include -isystem /vol0003/rccs-sdt/a01008/spack-all-test/env
-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/blaspp-2021.04
.01-42mbdrppzy6czxrtddqfxvbu2a6bh363/include -isystem /opt/FJSVxtcl
anga/tcsds-latest/include/mpi/fujitsu -isystem /opt/FJSVxtclanga/tc
sds-latest/clang-comp/include -I /home/rccs-sdt/a01008/spack-stage/
spack-stage-slate-2021.05.02-p7htmyncndh55qefmdtejgi36xusxdcb/spack
-src/include -I /home/rccs-sdt/a01008/spack-stage/spack-stage-slate
-2021.05.02-p7htmyncndh55qefmdtejgi36xusxdcb/spack-src/src -D SLATE
_NO_CUDA -D SLATE_NO_HIP -D slate_EXPORTS -D NDEBUG -internal-isyst
em /usr/lib/gcc/aarch64-redhat-linux/8/../../../../include/c++/8 -i
nternal-isystem /usr/lib/gcc/aarch64-redhat-linux/8/../../../../inc
lude/c++/8/aarch64-redhat-linux -internal-isystem /usr/lib/gcc/aarc
h64-redhat-linux/8/../../../../include/c++/8/backward -internal-isy
stem /usr/local/include -internal-isystem /opt/FJSVxtclanga/tcsds-1
.2.34/clang-comp/bin/../include/external -internal-isystem /opt/FJS
Vxtclanga/tcsds-1.2.34/clang-comp/lib64/clang/7.1.0/include -intern
al-externc-isystem /include -internal-externc-isystem /usr/include
-O2 -std=c++17 -fdeprecated-macro -fdebug-compilation-dir /vol0003/
rccs-sdt/a01008/spack-stage/spack-stage-slate-2021.05.02-p7htmyncnd
h55qefmdtejgi36xusxdcb/spack-build-p7htmyn -ferror-limit 19 -fmessa
ge-length 0 -fopenmp -pthread -fno-signed-char -fobjc-runtime=gcc -
fcxx-exceptions -fexceptions -fdiagnostics-show-option -vectorize-l
oops -vectorize-slp -mllvm -enable-fjloopfission -mllvm -enable-loo
pinterchange -mllvm -arch-aware-prefetch-sequential=auto -mllvm -ca
lc-weight-using-inst-latency -mllvm -enable-aarch64-mi-hazard -mllv
m -enable-separate-gepinv-before-vectorize -o CMakeFiles/slate.dir/
src/gemm.cc.o -x c++ /home/rccs-sdt/a01008/spack-stage/spack-stage-
slate-2021.05.02-p7htmyncndh55qefmdtejgi36xusxdcb/spack-src/src/gem
m.cc -faddrsig
113 1. <eof> parser at end of file
114 2. Per-file LLVM IR generation
>> 115 3. /home/rccs-sdt/a01008/spack-stage/spack-stage-slate-2021.05.02-p
7htmyncndh55qefmdtejgi36xusxdcb/spack-src/include/slate/BaseMatrix.
hh:387:10: Generating code for declaration 'slate::BaseMatrix<float
>::listBcastMT'
116 /opt/FJSVxtclanga/tcsds-1.2.34/clang-comp/bin/../lib64/libLLVMSuppo
rt.so.7.1(_ZN4llvm3sys15PrintStackTraceERNS_11raw_ostreamE+0x28)[0x
4000027ae968]
117 /opt/FJSVxtclanga/tcsds-1.2.34/clang-comp/bin/../lib64/libLLVMSuppo
rt.so.7.1(_ZN4llvm3sys17RunSignalHandlersEv+0x48)[0x4000027ad268]
118 /opt/FJSVxtclanga/tcsds-1.2.34/clang-comp/bin/../lib64/libLLVMSuppo
rt.so.7.1(+0xfd3a0)[0x4000027ad3a0]
119 linux-vdso.so.1(__kernel_rt_sigreturn+0x0)[0x4000000707a0]
120 /opt/FJSVxtclanga/tcsds-1.2.34/clang-comp/bin/../lib64/libclangCode
Gen.so.7.1(_ZN5clang7CodeGen15CodeGenFunction18EmitLValueForFieldEN
S0_6LValueEPKNS_9FieldDeclE+0x2c)[0x4000012e668c]
121 /opt/FJSVxtclanga/tcsds-1.2.34/clang-comp/bin/../lib64/libclangCode
Gen.so.7.1(+0x227878)[0x400001397878]

...

151 /opt/FJSVxtclanga/tcsds-1.2.34/clang-comp/bin/../lib64/libclangFron
tend.so.7.1(_ZN5clang16CompilerInstance13ExecuteActionERNS_14Fronte
ndActionE+0x128)[0x40000180bc08]
152 /opt/FJSVxtclanga/tcsds-1.2.34/clang-comp/bin/../lib64/libclangFron
tendTool.so.7.1(_ZN5clang25ExecuteCompilerInvocationEPNS_16Compiler
InstanceE+0x4f8)[0x4000018d3d10]
153 /opt/FJSVxtclanga/tcsds-1.2.34/clang-comp/bin/clang-7(_Z8cc1_mainN4
llvm8ArrayRefIPKcEES2_Pv+0x638)[0x411470]
154 /opt/FJSVxtclanga/tcsds-1.2.34/clang-comp/bin/clang-7(main+0x208c)[
0x40e7ec]
155 /lib64/libc.so.6(__libc_start_main+0xe4)[0x400003310de4]
156 /opt/FJSVxtclanga/tcsds-1.2.34/clang-comp/bin/clang-7[0x40f278]
>> 157 clang-7: error: unable to execute command: Segmentation fault
>> 158 clang-7: error: clang frontend command failed due to signal (use -v
to see invocation)
>> 159 make[2]: *** [CMakeFiles/slate.dir/build.make:315: CMakeFiles/slate
.dir/src/gemm.cc.o] Error 254
160 make[2]: *** Waiting for unfinished jobs....
161 make[2]: Leaving directory '/vol0003/rccs-sdt/a01008/spack-stage/sp
ack-stage-slate-2021.05.02-p7htmyncndh55qefmdtejgi36xusxdcb/spack-b
uild-p7htmyn'
>> 162 make[1]: *** [CMakeFiles/Makefile2:115: CMakeFiles/slate.dir/all] E
rror 2
163 make[1]: Leaving directory '/vol0003/rccs-sdt/a01008/spack-stage/sp
ack-stage-slate-2021.05.02-p7htmyncndh55qefmdtejgi36xusxdcb/spack-b
uild-p7htmyn'
164 make: *** [Makefile:139: all] Error 2

See build log for details:
/home/rccs-sdt/a01008/spack-stage/spack-stage-slate-2021.05.02-p7htmyncndh55qefmdtejgi36xusxdcb/spack-build-out.txt


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