List of Open Source Software which can be built on Fugaku
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Spack will be used to manage open source software packages on Fugaku.
Fugaku users can easily use pre-installed packages and built packages based on Spack recipes.
The following list shows the results of building/compiling packages for aarch64 according to the Spack recipes.
Note that the results in this list do not guarantee that each package will work properly.
On the other hand, Fujitsu will provide the following packages compiled with Fujitsu compiler on Fugaku as "external" packages, of which Spack can be aware.
|
smartdenovo master
| Compiler | Fujitsu Compiler 4.7.0 |
|---|---|
| Result | Dependency Error |
Failed Reason
Failed to install dependency package :
------------------------------------------------
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/sse2neon-master-43xfuzzf54ktu6pwvlnvcvdudbt35mw2
==> Installing smartdenovo-master-o2ohvnbtjjqwtzmm3u3i6jeg6inn6an5
==> No binary for smartdenovo-master-o2ohvnbtjjqwtzmm3u3i6jeg6inn6an5 found: installing from source
==> Warning: Missing a source id for sse2neon@master
==> Warning: Missing a source id for smartdenovo@master
==> Applied patch /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/var/spack/repos/builtin/packages/smartdenovo/aarch64.patch
==> Applied patch /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/var/spack/repos/builtin/packages/smartdenovo/inline-limit.patch
==> smartdenovo: Executing phase: 'edit'
==> smartdenovo: Executing phase: 'build'
==> Error: ProcessError: Command exited with status 2:
'make' '-j16'
7 errors found in build log:
11 gcc -W -Wall -O4 -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -o wtclp file_
reader.c wtclp.c -lm -lpthread
12 gcc -W -Wall -O4 -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -o wtext file_
reader.c ksw.c wtext.c -lm -lpthread
13 gcc -W -Wall -O4 -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -o wtgbo file_
reader.c ksw.c wtgbo.c -lm -lpthread
14 gcc -W -Wall -O4 -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -o wtlay file_
reader.c wtlay.c -lm -lpthread
15 gcc -W -Wall -O4 -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -o wtcns file_
reader.c ksw.c wtcns.c -lm -lpthread
16 gcc -W -Wall -O4 -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -o wtmsa file_
reader.c ksw.c wtmsa.c -lm -lpthread
>> 17 ksw.c:28:10: fatal error: sse2neon.h: No such file or directory
18 #include "sse2neon.h"
19 ^~~~~~~~~~~~
20 compilation terminated.
>> 21 ksw.c:28:10: fatal error: sse2neon.h: No such file or directory
22 #include "sse2neon.h"
23 ^~~~~~~~~~~~
24 compilation terminated.
>> 25 ksw.c:28:10: fatal error: sse2neon.h: No such file or directory
26 #include "sse2neon.h"
27 ^~~~~~~~~~~~
28 compilation terminated.
>> 29 ksw.c:28:10: fatal error: sse2neon.h: No such file or directory
30 #include "sse2neon.h"
31 ^~~~~~~~~~~~
32 compilation terminated.
>> 33 ksw.c:28:10: fatal error: sse2neon.h: No such file or directory
34 #include "sse2neon.h"
35 ^~~~~~~~~~~~
36 compilation terminated.
>> 37 ksw.c:28:10: fatal error: sse2neon.h: No such file or directory
38 #include "sse2neon.h"
39 ^~~~~~~~~~~~
40 compilation terminated.
>> 41 ksw.c:28:10: fatal error: sse2neon.h: No such file or directory
42 #include "sse2neon.h"
43 ^~~~~~~~~~~~
44 compilation terminated.
45 make: *** [Makefile:21: pairaln] Error 1
46 make: *** Waiting for unfinished jobs....
47 make: *** [Makefile:27: wtcyc] Error 1
See build log for details:
/home/rccs-sdt/a01008/spack-stage/spack-stage-smartdenovo-master-o2ohvnbtjjqwtzmm3u3i6jeg6inn6an5/spack-build-out.txt
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