List of Open Source Software which can be built on Fugaku
 |
Spack will be used to manage open source software packages on Fugaku.
Fugaku users can easily use pre-installed packages and built packages based on Spack recipes.
The following list shows the results of building/compiling packages for aarch64 according to the Spack recipes.
Note that the results in this list do not guarantee that each package will work properly.
On the other hand, Fujitsu will provide the following packages compiled with Fujitsu compiler on Fugaku as "external" packages, of which Spack can be aware.
|
snap-berkeley 0.15
| Compiler | Fujitsu Compiler 4.7.0 |
|---|---|
| Result | Dependency Error |
Failed Reason
Failed to install dependency package :
------------------------------------------------
[+] /usr (external zlib-1.2.11-o3hvygtdcp6vg3bpvsrurq4hgklwtype)
==> Installing snap-berkeley-0.15-uuttmvllnyi7fsrqpfp75kv33drvrw57
==> No binary for snap-berkeley-0.15-uuttmvllnyi7fsrqpfp75kv33drvrw57 found: installing from source
==> Fetching https://mirror.spack.io/_source-cache/archive/be/bea0174c8d01907023494d7ffd2a6dab9c38d248cfe4d3c26feedf9d5becce9a.tar.gz
==> No patches needed for snap-berkeley
==> snap-berkeley: Executing phase: 'edit'
==> snap-berkeley: Executing phase: 'build'
==> Error: ProcessError: Command exited with status 2:
'make' '-j16'
20 errors found in build log:
18 g++ -O3 -MMD -ISNAPLib -c -o SNAPLib/HybridAligner.o SNAPLib/Hybri
dAligner.cpp
19 g++ -O3 -MMD -ISNAPLib -c -o SNAPLib/PairedAligner.o SNAPLib/Paire
dAligner.cpp
20 g++ -O3 -MMD -ISNAPLib -c -o SNAPLib/AlignerOptions.o SNAPLib/Alig
nerOptions.cpp
21 In file included from SNAPLib/Aligner.h:30,
22 from SNAPLib/BaseAligner.h:30,
23 from SNAPLib/SingleAligner.cpp:27:
>> 24 SNAPLib/Genome.h:26:10: fatal error: xmmintrin.h: No such file or di
rectory
25 #include <xmmintrin.h>
26 ^~~~~~~~~~~~~
27 compilation terminated.
28 In file included from SNAPLib/AlignerOptions.h:30,
29 from SNAPLib/AlignerOptions.cpp:27:
>> 30 SNAPLib/Genome.h:26:10: fatal error: xmmintrin.h: No such file or di
rectory
31 #include <xmmintrin.h>
32 ^~~~~~~~~~~~~
33 compilation terminated.
>> 34 make: *** [<builtin>: SNAPLib/SingleAligner.o] Error 1
35 make: *** Waiting for unfinished jobs....
>> 36 make: *** [<builtin>: SNAPLib/AlignerOptions.o] Error 1
37 In file included from SNAPLib/Mutator.h:5,
38 from SNAPLib/Mutator.cpp:2:
>> 39 SNAPLib/Genome.h:26:10: fatal error: xmmintrin.h: No such file or di
rectory
40 #include <xmmintrin.h>
41 ^~~~~~~~~~~~~
42 compilation terminated.
>> 43 make: *** [<builtin>: SNAPLib/Mutator.o] Error 1
44 In file included from SNAPLib/HybridAligner.h:33,
45 from SNAPLib/HybridAligner.cpp:29:
>> 46 SNAPLib/Genome.h:26:10: fatal error: xmmintrin.h: No such file or di
rectory
47 #include <xmmintrin.h>
48 ^~~~~~~~~~~~~
49 compilation terminated.
50 In file included from SNAPLib/FASTA.h:27,
51 from SNAPLib/FASTA.cpp:27:
>> 52 SNAPLib/Genome.h:26:10: fatal error: xmmintrin.h: No such file or di
rectory
53 #include <xmmintrin.h>
54 ^~~~~~~~~~~~~
55 compilation terminated.
56 In file included from SNAPLib/GenomeIndex.h:29,
57 from SNAPLib/PairedAligner.cpp:36:
>> 58 SNAPLib/Genome.h:26:10: fatal error: xmmintrin.h: No such file or di
rectory
59 #include <xmmintrin.h>
60 ^~~~~~~~~~~~~
61 compilation terminated.
62 In file included from SNAPLib/Aligner.h:30,
63 from SNAPLib/PairedEndAligner.h:25,
64 from SNAPLib/SAM.h:24,
65 from SNAPLib/SAM.cpp:23:
>> 66 SNAPLib/Genome.h:26:10: fatal error: xmmintrin.h: No such file or di
rectory
67 #include <xmmintrin.h>
68 ^~~~~~~~~~~~~
69 compilation terminated.
70 In file included from SNAPLib/GenomeIndex.h:29,
71 from SNAPLib/WGsim.h:27,
72 from SNAPLib/WGsim.cpp:26:
>> 73 SNAPLib/Genome.h:26:10: fatal error: xmmintrin.h: No such file or di
rectory
74 #include <xmmintrin.h>
75 ^~~~~~~~~~~~~
76 compilation terminated.
77 In file included from SNAPLib/AlignerOptions.h:30,
78 from SNAPLib/AlignerContext.cpp:29:
>> 79 SNAPLib/Genome.h:26:10: fatal error: xmmintrin.h: No such file or di
rectory
80 #include <xmmintrin.h>
81 ^~~~~~~~~~~~~
82 compilation terminated.
83 In file included from SNAPLib/GenomeIndex.h:29,
84 from SNAPLib/BiasTables.cpp:26:
>> 85 SNAPLib/Genome.h:26:10: fatal error: xmmintrin.h: No such file or di
rectory
86 #include <xmmintrin.h>
87 ^~~~~~~~~~~~~
88 compilation terminated.
>> 89 make: *** [<builtin>: SNAPLib/HybridAligner.o] Error 1
>> 90 make: *** [<builtin>: SNAPLib/SAM.o] Error 1
>> 91 make: *** [<builtin>: SNAPLib/WGsim.o] Error 1
>> 92 make: *** [<builtin>: SNAPLib/BiasTables.o] Error 1
>> 93 make: *** [<builtin>: SNAPLib/FASTA.o] Error 1
>> 94 make: *** [<builtin>: SNAPLib/PairedAligner.o] Error 1
>> 95 make: *** [<builtin>: SNAPLib/AlignerContext.o] Error 1
See build log for details:
/home/rccs-sdt/a01008/spack-stage/spack-stage-snap-berkeley-0.15-uuttmvllnyi7fsrqpfp75kv33drvrw57/spack-build-out.txt
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