List of Open Source Software which can be built on Fugaku

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Spack will be used to manage open source software packages on Fugaku. Fugaku users can easily use pre-installed packages and built packages based on Spack recipes. The following list shows the results of building/compiling packages for aarch64 according to the Spack recipes. Note that the results in this list do not guarantee that each package will work properly. On the other hand, Fujitsu will provide the following packages compiled with Fujitsu compiler on Fugaku as "external" packages, of which Spack can be aware.
  • OpenJDK 11
  • Ruby 2.6.5 or later
  • Python2 2.7.15
  • Python3 3.6.8
  • Numpy 1.14.3
  • SciPy 1.0.0
  • Eclipse IDE 2019-09 R Packages
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soapdenovo-trans 1.0.4

Compiler Fujitsu Compiler 4.7.0
Result Dependency Error

Failed Reason

Failed to install dependency package :
------------------------------------------------
[+] /usr (external ncurses-6.1-qbvus6vwvtyxe33hxq4hbpazkrpy6ctb)
[+] /usr (external perl-5.26.3-cfeod657avcbjzlstrxizeulrdfnqb3r)
[+] /vol0003/rccs-sdt/a01008/opt/python/3.9.9/fj (external python-3.9.9-3wcip6atrybofsb566d7pjqwhl76u4dp)
[+] /usr (external zlib-1.2.11-o3hvygtdcp6vg3bpvsrurq4hgklwtype)
==> Installing samtools-0.1.8-l3q7jvdzljkor5rxfn43marux4mrarcw
==> No binary for samtools-0.1.8-l3q7jvdzljkor5rxfn43marux4mrarcw found: installing from source
==> Fetching https://mirror.spack.io/_source-cache/archive/34/343daf96f035c499c5b82dce7b4d96b10473308277e40c435942b6449853815b.tar.gz
==> No patches needed for samtools
==> samtools: Executing phase: 'install'
==> Error: ProcessError: Command exited with status 2:
'make' '-j16' 'prefix=/vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/samtools-0.1.8-l3q7jvdzljkor5rxfn43marux4mrarcw' 'LIBCURSES=-lncursesw -ltinfow'

2 errors found in build log:
149 ^~~~~~~
150 ksort.h:148:25: note: in definition of macro 'KSORT_INIT'
151 for (j = i; j > s && __sort_lt(*j, *(j-1)); --j) { \
152 ^~~~~~~~~
153 ar -cru libbam.a bgzf.o kstring.o bam_aux.o bam.o bam_import.o sam.
o bam_index.o bam_pileup.o bam_lpileup.o bam_md.o glf.o razf.o faid
x.o knetfile.o bam_sort.o sam_header.o bam_reheader.o
154 gcc -g -Wall -O2 -o samtools bam_tview.o bam_maqcns.o bam_plcmd.o
sam_view.o bam_rmdup.o bam_rmdupse.o bam_mate.o bam_stat.o bam_colo
r.o bamtk.o kaln.o libbam.a -lm -lncursesw -ltinfow -lz
>> 155 ld: cannot find -ltinfow
>> 156 collect2: error: ld returned 1 exit status
157 make[1]: *** [Makefile:43: samtools] Error 1
158 make[1]: Leaving directory '/vol0003/rccs-sdt/a01008/spack-stage/sp
ack-stage-samtools-0.1.8-l3q7jvdzljkor5rxfn43marux4mrarcw/spack-src
'
159 make: *** [Makefile:23: all-recur] Error 1

See build log for details:
/home/rccs-sdt/a01008/spack-stage/spack-stage-samtools-0.1.8-l3q7jvdzljkor5rxfn43marux4mrarcw/spack-build-out.txt

==> Warning: Skipping build of soapdenovo-trans-1.0.4-tzqevueb75bnwg2izeskfdnfxt265fos since samtools-0.1.8-l3q7jvdzljkor5rxfn43marux4mrarcw failed
==> Error: soapdenovo-trans-1.0.4-tzqevueb75bnwg2izeskfdnfxt265fos: Package was not installed
==> Error: Installation request failed. Refer to reported errors for failing package(s).


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