List of Open Source Software which can be built on Fugaku

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Spack will be used to manage open source software packages on Fugaku. Fugaku users can easily use pre-installed packages and built packages based on Spack recipes. The following list shows the results of building/compiling packages for aarch64 according to the Spack recipes. Note that the results in this list do not guarantee that each package will work properly. On the other hand, Fujitsu will provide the following packages compiled with Fujitsu compiler on Fugaku as "external" packages, of which Spack can be aware.
  • OpenJDK 11
  • Ruby 2.6.5 or later
  • Python2 2.7.15
  • Python3 3.6.8
  • Numpy 1.14.3
  • SciPy 1.0.0
  • Eclipse IDE 2019-09 R Packages
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stacks 2.53

Compiler Fujitsu Compiler 4.7.0
Result Dependency Error

Failed Reason

Failed to install dependency package :
------------------------------------------------
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/gnuconfig-2021-08-14-ezyvb3gy7i726n45kwb44a4vxle3if3i
[+] /usr (external perl-5.26.3-cfeod657avcbjzlstrxizeulrdfnqb3r)
[+] /usr (external zlib-1.2.11-o3hvygtdcp6vg3bpvsrurq4hgklwtype)
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/sparsehash-2.0.4-zexb3mkdkjvgq7tbdkswa7zkzohr3at2
==> Installing stacks-2.53-hfg253hgovqkz5b3j3d5fin5vgqqhwul
==> No binary for stacks-2.53-hfg253hgovqkz5b3j3d5fin5vgqqhwul found: installing from source
==> Fetching https://mirror.spack.io/_source-cache/archive/ee/ee1efceaeeeb7a39f0c2e804ad7c0a003094db28c9101120c38ddb02846e90fd.tar.gz
==> No patches needed for stacks
==> stacks: Executing phase: 'autoreconf'
==> stacks: Executing phase: 'configure'
==> stacks: Executing phase: 'build'
==> stacks: Executing phase: 'install'
==> Error: ProcessError: Command exited with status 2:
'make' '-j16' 'install'

1 error found in build log:
395 mv /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/s
pack/linux-rhel8-a64fx/fj-4.7.0/stacks-2.53-hfg253hgovqkz5b3j3d5fin
5vgqqhwul/bin/denovo_map.pl.subst /vol0003/rccs-sdt/a01008/spack-al
l-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/stac
ks-2.53-hfg253hgovqkz5b3j3d5fin5vgqqhwul/bin/denovo_map.pl
396 chmod +x /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack
/opt/spack/linux-rhel8-a64fx/fj-4.7.0/stacks-2.53-hfg253hgovqkz5b3j
3d5fin5vgqqhwul/bin/denovo_map.pl
397 sed -e 's,_VERSION_,2.53,' -e 's,_BINDIR_,/vol0003/rccs-sdt/a01008/
spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.
7.0/stacks-2.53-hfg253hgovqkz5b3j3d5fin5vgqqhwul/bin/,g' -e 's,_PKG
DATADIR_,/vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack
/opt/spack/linux-rhel8-a64fx/fj-4.7.0/stacks-2.53-hfg253hgovqkz5b3j
3d5fin5vgqqhwul/share/stacks/,g' /vol0003/rccs-sdt/a01008/spack-all
-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/stack
s-2.53-hfg253hgovqkz5b3j3d5fin5vgqqhwul/bin/ref_map.pl > /vol0003/r
ccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rh
el8-a64fx/fj-4.7.0/stacks-2.53-hfg253hgovqkz5b3j3d5fin5vgqqhwul/bin
/ref_map.pl.subst
398 mv /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/s
pack/linux-rhel8-a64fx/fj-4.7.0/stacks-2.53-hfg253hgovqkz5b3j3d5fin
5vgqqhwul/bin/ref_map.pl.subst /vol0003/rccs-sdt/a01008/spack-all-t
est/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/stacks-
2.53-hfg253hgovqkz5b3j3d5fin5vgqqhwul/bin/ref_map.pl
399 chmod +x /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack
/opt/spack/linux-rhel8-a64fx/fj-4.7.0/stacks-2.53-hfg253hgovqkz5b3j
3d5fin5vgqqhwul/bin/ref_map.pl
400 sed -i.bkp -e 's,_VERSION_,2.53,' /vol0003/rccs-sdt/a01008/spack-al
l-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/stac
ks-2.53-hfg253hgovqkz5b3j3d5fin5vgqqhwul/bin/stacks-integrate-align
ments
>> 401 sed: can't read /vol0003/rccs-sdt/a01008/spack-all-test/env-2022022
5/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/stacks-2.53-hfg253hgov
qkz5b3j3d5fin5vgqqhwul/bin/stacks-integrate-alignments: No such fil
e or directory
402 make[3]: *** [Makefile:1677: install-data-hook] Error 2
403 make[3]: Leaving directory '/vol0003/rccs-sdt/a01008/spack-stage/sp
ack-stage-stacks-2.53-hfg253hgovqkz5b3j3d5fin5vgqqhwul/spack-src'
404 make[2]: *** [Makefile:1594: install-data-am] Error 2
405 make[2]: *** Waiting for unfinished jobs....
406 make[2]: Leaving directory '/vol0003/rccs-sdt/a01008/spack-stage/sp
ack-stage-stacks-2.53-hfg253hgovqkz5b3j3d5fin5vgqqhwul/spack-src'
407 make[1]: *** [Makefile:1539: install-am] Error 2

See build log for details:
/home/rccs-sdt/a01008/spack-stage/spack-stage-stacks-2.53-hfg253hgovqkz5b3j3d5fin5vgqqhwul/spack-build-out.txt


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