Failed Reason

Failed to install dependency package :
------------------------------------------------
[+] /usr (external zlib-1.2.11-o3hvygtdcp6vg3bpvsrurq4hgklwtype)
==> Installing subread-2.0.2-oggkeoshhxadiplnu6jii2e6s3vypwco
==> No binary for subread-2.0.2-oggkeoshhxadiplnu6jii2e6s3vypwco found: installing from source
==> Fetching https://mirror.spack.io/_source-cache/archive/0b/0b64bd51f39f8d322c4594697fa5f0f64fbe60283113eadadff9f4268f897079.tar.gz
==> No patches needed for subread
==> subread: Executing phase: 'edit'
==> subread: Executing phase: 'build'
==> Error: ProcessError: Command exited with status 2:
'make' '-j16' '-f' 'Makefile.Linux'

3 errors found in build log:
21 /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/lib/spac
k/env/fj/fcc -O3 -DMAKE_FOR_EXON -D MAKE_STANDALONE -D SUBREAD_V
ERSION=\""2.0.2"\" -D_FILE_OFFSET_BITS=64 -fmessage-length=0 -
ggdb -c -o core-bigtable.o core-bigtable.c
22 /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/lib/spac
k/env/fj/fcc -O3 -DMAKE_FOR_EXON -D MAKE_STANDALONE -D SUBREAD_V
ERSION=\""2.0.2"\" -D_FILE_OFFSET_BITS=64 -fmessage-length=0 -
ggdb -c -o seek-zlib.o seek-zlib.c
23 /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/lib/spac
k/env/fj/fcc -O3 -DMAKE_FOR_EXON -D MAKE_STANDALONE -D SUBREAD_V
ERSION=\""2.0.2"\" -D_FILE_OFFSET_BITS=64 -fmessage-length=0 -
ggdb -c -o input-blc.o input-blc.c
24 core-junction.c:1896:50: warning: result of comparison of constant
-1 with expression of type 'char' is always false [-Wtautological-c
onstant-out-of-range-compare]
25 if( dynamic_highest_path[highest_target_en
d] == -1 ) break;
26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
~~ ^ ~~
>> 27 input-files.c:233:10: gene-algorithms.cwarning: :result of comparis
on of constant -1 with expression of type 'char' is always false [-
Wtautological-constant-out-of-range-compare]794
28 :12: warning: result of comparison of constant -1 with expression o
f type 'char' is always false [-Wtautological-constant-out-of-range
-compare]
29 if(info[0]==-1){ if(ch == EOF) break
;
30
31 ~~~~~~~^ ~~ ~~ ^ ~~~
32
33 gene-algorithms.c:input-files.c798::25017::11 :warning : warningres
ult of comparison of constant -2 with expression of type 'char' is
always false [-Wtautological-constant-out-of-range-compare]:

...

119 cd longread-one && make
120 /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/lib/spac
k/env/fj/fcc -O3 -DMAKE_FOR_EXON -D MAKE_STANDALONE -D SUBREAD_V
ERSION=\""2.0.2"\" -D_FILE_OFFSET_BITS=64 -fmessage-length=0 -
ggdb -o subread-fullscan fullscan.c core.o core-junction.o core-i
ndel.o sambam-file.o sublog.o gene-algorithms.o hashtable.o input-f
iles.o sorted-hashtable.o gene-value-index.o exon-algorithms.o Help
erFunctions.o interval_merge.o long-hashtable.o core-bigtable.o see
k-zlib.o input-blc.o -pthread -lz -O3 -DMAKE_FOR_EXON -D MAKE_ST
ANDALONE -lm
121 /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/lib/spac
k/env/fj/fcc -O3 -DMAKE_FOR_EXON -D MAKE_STANDALONE -D SUBREAD_V
ERSION=\""2.0.2"\" -D_FILE_OFFSET_BITS=64 -fmessage-length=0 -
ggdb -o propmapped propmapped.c core.o core-junction.o core-indel.
o sambam-file.o sublog.o gene-algorithms.o hashtable.o input-files.
o sorted-hashtable.o gene-value-index.o exon-algorithms.o HelperFun
ctions.o interval_merge.o long-hashtable.o core-bigtable.o seek-zli
b.o input-blc.o -pthread -lz -O3 -DMAKE_FOR_EXON -D MAKE_STANDALO
NE -lm
122 /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/lib/spac
k/env/fj/fcc -O3 -DMAKE_FOR_EXON -D MAKE_STANDALONE -D SUBREAD_V
ERSION=\""2.0.2"\" -D_FILE_OFFSET_BITS=64 -fmessage-length=0 -
ggdb -o flattenGTF flattenAnnotations.c core.o core-junction.o co
re-indel.o sambam-file.o sublog.o gene-algorithms.o hashtable.o inp
ut-files.o sorted-hashtable.o gene-value-index.o exon-algorithms.o
HelperFunctions.o interval_merge.o long-hashtable.o core-bigtable.o
seek-zlib.o input-blc.o -pthread -lz -O3 -DMAKE_FOR_EXON -D MAKE
_STANDALONE -lm
123 make[1]: Entering directory '/vol0003/rccs-sdt/a01008/spack-stage/s
pack-stage-subread-2.0.2-oggkeoshhxadiplnu6jii2e6s3vypwco/spack-src
/src/longread-one'
124 gcc -mtune=core2 -O3 -Wall -DMAKE_FOR_EXON -D MAKE_STANDALONE
-D_FILE_OFFSET_BITS=64 -DSUBREAD_VERSION=\""2.0.2"\" -fmessage-l
ength=0 -ggdb -o LRMsorted-hashtable.o -c LRMsorted-hashtable.c
>> 125 cc1: error: unknown value 'core2' for -mtune
126 cc1: note: valid arguments are: cortex-a35 cortex-a53 cortex-a57 co
rtex-a72 cortex-a73 thunderx thunderxt88p1 thunderxt88 thunderxt81
thunderxt83 xgene1 falkor qdf24xx exynos-m1 thunderx2t99p1 vulcan t
hunderx2t99 cortex-a55 cortex-a75 cortex-a76 ares neoverse-n1 saphi
ra zeus neoverse-v1 cortex-a57.cortex-a53 cortex-a72.cortex-a53 cor
tex-a73.cortex-a35 cortex-a73.cortex-a53 cortex-a75.cortex-a55 gene
ric
127 make[1]: *** [Makefile:26: LRMsorted-hashtable.o] Error 1
128 make[1]: Leaving directory '/vol0003/rccs-sdt/a01008/spack-stage/sp
ack-stage-subread-2.0.2-oggkeoshhxadiplnu6jii2e6s3vypwco/spack-src/
src/longread-one'
>> 129 make: *** [Makefile.Linux:38: sublong] Error 2
130 make: *** Waiting for unfinished jobs....
131 read-repair.c:66:52: warning: result of comparison of constant -1 w
ith expression of type 'char' is always true [-Wtautological-consta
nt-out-of-range-compare]
132 while ((c = getopt(argc, argv, "i:T:M:o:vtdcS?")) != -1)
133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ ~~
134 1 warning generated.
135 removeDupReads.c:362:84: warning: result of comparison of constant
-1 with expression of type 'char' is always true [-Wtautological-co
nstant-out-of-range-compare]

See build log for details:
/home/rccs-sdt/a01008/spack-stage/spack-stage-subread-2.0.2-oggkeoshhxadiplnu6jii2e6s3vypwco/spack-build-out.txt