List of Open Source Software which can be built on Fugaku

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Spack will be used to manage open source software packages on Fugaku. Fugaku users can easily use pre-installed packages and built packages based on Spack recipes. The following list shows the results of building/compiling packages for aarch64 according to the Spack recipes. Note that the results in this list do not guarantee that each package will work properly. On the other hand, Fujitsu will provide the following packages compiled with Fujitsu compiler on Fugaku as "external" packages, of which Spack can be aware.
  • OpenJDK 11
  • Ruby 2.6.5 or later
  • Python2 2.7.15
  • Python3 3.6.8
  • Numpy 1.14.3
  • SciPy 1.0.0
  • Eclipse IDE 2019-09 R Packages
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transabyss 1.5.5

Compiler Fujitsu Compiler 4.7.0
Result Dependency Error

Failed Reason

Failed to install dependency package :
------------------------------------------------
em/vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/sp
ack/linux-rhel8-a64fx/fj-4.7.0/boost-1.59.0-t5bnkdh56akjgn5owtdbmg5
k3drsg2ss -isystem/opt/FJSVxtclanga/tcsds-latest/include -isystem
/home/rccs-sdt/a01008/spack-stage/spack-stage-abyss-1.5.2-iw25cvhr2
p6vv6oossksak3sitvyko2a/spack-src/boost_1_55_0 -Wall -Wextra -Werro
r -g -O2 -MT libassembly_a-SequenceCollection.o -MD -MP -MF .deps/l
ibassembly_a-SequenceCollection.Tpo -c -o libassembly_a-SequenceCol
lection.o `test -f 'SequenceCollection.cpp' || echo '/home/rccs-sdt
/a01008/spack-stage/spack-stage-abyss-1.5.2-iw25cvhr2p6vv6oossksak3
sitvyko2a/spack-src/Assembly/'`SequenceCollection.cpp
210 In file included from AssemblyAlgorithms.cpp:1:
211 In file included from ./AssemblyAlgorithms.h:4:
212 In file included from ./BranchGroup.h:4:
>> 213 ./BranchRecord.h:134:14: error: 'swap<BranchRecord>' is missing exc
eption specification 'noexcept(__and_<is_nothrow_move_constructible
<BranchRecord>, is_nothrow_move_assignable<BranchRecord> >::value)'
214 inline void swap(BranchRecord& a, BranchRecord& b)
215 ^
216 noexcept
(__and_<is_nothrow_move_constructible<BranchRecord>, is_nothrow_mov
e_assignable<BranchRecord> >::value)
217 ./BranchRecord.h:134:14: note: previous declaration is here
218 In file included from BranchRecord.cpp:1:
>> 219 ./BranchRecord.h:134:14: error: 'swap<BranchRecord>' is missing exc
eption specification 'noexcept(__and_<is_nothrow_move_constructible
<BranchRecord>, is_nothrow_move_assignable<BranchRecord> >::value)'
220 inline void swap(BranchRecord& a, BranchRecord& b)
221 ^
222 noexcept
(__and_<is_nothrow_move_constructible<BranchRecord>, is_nothrow_mov
e_assignable<BranchRecord> >::value)
223 ./BranchRecord.h:134:14: note: previous declaration is here
224 In file included from BranchGroup.cpp:1:
225 In file included from ./BranchGroup.h:4:
>> 226 ./BranchRecord.h:134:14: error: 'swap<BranchRecord>' is missing exc
eption specification 'noexcept(__and_<is_nothrow_move_constructible
<BranchRecord>, is_nothrow_move_assignable<BranchRecord> >::value)'
227 inline void swap(BranchRecord& a, BranchRecord& b)
228 ^
229 noexcept
(__and_<is_nothrow_move_constructible<BranchRecord>, is_nothrow_mov
e_assignable<BranchRecord> >::value)
230 ./BranchRecord.h:134:14: note: previous declaration is here
231 1 error generated.
232 make[2]: *** [Makefile:393: libassembly_a-BranchRecord.o] Error 1
233 make[2]: *** Waiting for unfinished jobs....
234 mv -f .deps/libassembly_a-Options.Tpo .deps/libassembly_a-Options.P
o
235 In file included from AssemblyAlgorithms.cpp:1:
236 In file included from ./AssemblyAlgorithms.h:4:
>> 237 ./BranchGroup.h:139:14: error: no function template matches functio
n template specialization 'swap'
238 inline void swap(BranchGroup&, BranchGroup&) { assert(false
); }
239 ^
240 /usr/lib/gcc/aarch64-redhat-linux/8/../../../../include/c++/8/bits/
move.h:205:5: note: candidate template ignored: could not match 'ty
pe-parameter-0-0 [_Size]' against 'BranchGroup'
241 swap(_Tp (&__a)[_Nm], _Tp (&__b)[_Nm])
242 ^
243 /usr/lib/gcc/aarch64-redhat-linux/8/../../../../include/c++/8/bits/
stl_pair.h:495:5: note: candidate template ignored: could not match
'pair<type-parameter-0-0, type-parameter-0-1>' against 'BranchGrou
p'

...

307 swap(map<_Key, _Tp, _Compare, _Alloc>& __x,
308 ^
309 /usr/lib/gcc/aarch64-redhat-linux/8/../../../../include/c++/8/bits/
stl_multimap.h:1150:5: note: candidate template ignored: could not
match 'multimap<type-parameter-0-0, type-parameter-0-1, type-parame
ter-0-2, type-parameter-0-3>' against 'BranchGroup'
310 swap(multimap<_Key, _Tp, _Compare, _Alloc>& __x,
311 ^
312 In file included from BranchGroup.cpp:1:
>> 313 ./BranchGroup.h:139:14: error: no function template matches functio
n template specialization 'swap'
314 inline void swap(BranchGroup&, BranchGroup&) { assert(false
); }
315 ^
316 /usr/lib/gcc/aarch64-redhat-linux/8/../../../../include/c++/8/bits/
move.h:205:5: note: candidate template ignored: could not match 'ty
pe-parameter-0-0 [_Size]' against 'BranchGroup'
317 swap(_Tp (&__a)[_Nm], _Tp (&__b)[_Nm])
318 ^
319 /usr/lib/gcc/aarch64-redhat-linux/8/../../../../include/c++/8/bits/
stl_pair.h:495:5: note: candidate template ignored: could not match
'pair<type-parameter-0-0, type-parameter-0-1>' against 'BranchGrou
p'

...

385 /usr/lib/gcc/aarch64-redhat-linux/8/../../../../include/c++/8/bits/
stl_multimap.h:1150:5: note: candidate template ignored: could not
match 'multimap<type-parameter-0-0, type-parameter-0-1, type-parame
ter-0-2, type-parameter-0-3>' against 'BranchGroup'
386 swap(multimap<_Key, _Tp, _Compare, _Alloc>& __x,
387 ^
388 2 errors generated.
389 make[2]: *** [Makefile:379: libassembly_a-BranchGroup.o] Error 1
390 In file included from AssemblyAlgorithms.cpp:6:
>> 391 /home/rccs-sdt/a01008/spack-stage/spack-stage-abyss-1.5.2-iw25cvhr2
p6vv6oossksak3sitvyko2a/spack-src/Common/Histogram.h:314:14: error:
'swap<Histogram>' is missing exception specification 'noexcept(__a
nd_<is_nothrow_move_constructible<Histogram>, is_nothrow_move_assig
nable<Histogram> >::value)'
392 inline void swap(Histogram&, Histogram&) { assert(false); }
393 ^
394 noexcept(__and_<is
_nothrow_move_constructible<Histogram>, is_nothrow_move_assignable<
Histogram> >::value)
395 /home/rccs-sdt/a01008/spack-stage/spack-stage-abyss-1.5.2-iw25cvhr2
p6vv6oossksak3sitvyko2a/spack-src/Common/Histogram.h:314:14: note:
previous declaration is here
396 In file included from DotWriter.cpp:5:
397 In file included from ../Graph/ContigGraphAlgorithms.h:7:
>> 398 /home/rccs-sdt/a01008/spack-stage/spack-stage-abyss-1.5.2-iw25cvhr2
p6vv6oossksak3sitvyko2a/spack-src/Common/Estimate.h:170:14: error:
'swap<EstimateRecord>' is missing exception specification 'noexcept
(__and_<is_nothrow_move_constructible<EstimateRecord>, is_nothrow_m
ove_assignable<EstimateRecord> >::value)'
399 inline void swap(EstimateRecord&, EstimateRecord&)
400 ^
401 noexcept
(__and_<is_nothrow_move_constructible<EstimateRecord>, is_nothrow_m
ove_assignable<EstimateRecord> >::value)
402 /home/rccs-sdt/a01008/spack-stage/spack-stage-abyss-1.5.2-iw25cvhr2
p6vv6oossksak3sitvyko2a/spack-src/Common/Estimate.h:170:14: note: p
revious declaration is here
403 3 errors generated.
404 make[2]: *** [Makefile:365: libassembly_a-AssemblyAlgorithms.o] Err
or 1

See build log for details:
/home/rccs-sdt/a01008/spack-stage/spack-stage-abyss-1.5.2-iw25cvhr2p6vv6oossksak3sitvyko2a/spack-build-out.txt

==> Installing py-python-igraph-0.7.0-w2m3ttouynlslrgc2gdl5hmy2sx3v76t
==> No binary for py-python-igraph-0.7.0-w2m3ttouynlslrgc2gdl5hmy2sx3v76t found: installing from source
==> Warning: Skipping build of transabyss-1.5.5-46zdciqk6l6ocbw3euqdy7foblfndr6r since abyss-1.5.2-iw25cvhr2p6vv6oossksak3sitvyko2a failed
==> Using cached archive: /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/var/spack/cache/_source-cache/archive/64/64ac270e80a92066d489407be1900a329df8e26844430f941ecc88771188c471.tar.gz
==> No patches needed for py-python-igraph
==> py-python-igraph: Executing phase: 'build'
==> Error: ProcessError: Command exited with status 1:
'/vol0003/rccs-sdt/a01008/opt/python/3.9.9/fj/bin/python3.9' '-s' 'setup.py' '--no-user-cfg' 'build'
See build log for details:
/home/rccs-sdt/a01008/spack-stage/spack-stage-py-python-igraph-0.7.0-w2m3ttouynlslrgc2gdl5hmy2sx3v76t/spack-build-out.txt

==> Error: transabyss-1.5.5-46zdciqk6l6ocbw3euqdy7foblfndr6r: Package was not installed
==> Error: Installation request failed. Refer to reported errors for failing package(s).


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