List of Open Source Software which can be built on Fugaku

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Spack will be used to manage open source software packages on Fugaku. Fugaku users can easily use pre-installed packages and built packages based on Spack recipes. The following list shows the results of building/compiling packages for aarch64 according to the Spack recipes. Note that the results in this list do not guarantee that each package will work properly. On the other hand, Fujitsu will provide the following packages compiled with Fujitsu compiler on Fugaku as "external" packages, of which Spack can be aware.
  • OpenJDK 11
  • Ruby 2.6.5 or later
  • Python2 2.7.15
  • Python3 3.6.8
  • Numpy 1.14.3
  • SciPy 1.0.0
  • Eclipse IDE 2019-09 R Packages
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votca-xtp 2021.2

Compiler Fujitsu Compiler 4.7.0
Result Dependency Error

Failed Reason

Failed to install dependency package :
------------------------------------------------
[+] /usr (external ncurses-6.1-qbvus6vwvtyxe33hxq4hbpazkrpy6ctb)
[+] /usr (external pkgconf-1.4.2-x2r3t6jrikcoqgyvulfa2xm3cgearc2z)
[+] /usr (external zlib-1.2.11-o3hvygtdcp6vg3bpvsrurq4hgklwtype)
[+] /usr (external autoconf-2.69-me3qacnq6as2fvkhuiia2ks5udajax3b)
[+] /usr (external automake-1.16.1-gbketv7wv244mk5mkf65hyjxew4yocxo)
[+] /usr (external bzip2-1.0.6-pkyqs6czmr636ktska3fpjek77reodry)
[+] /usr (external gmp-6.1.2-aweb6qdw6k72z5szxngketpntkdvprym)
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/gnuconfig-2021-08-14-ezyvb3gy7i726n45kwb44a4vxle3if3i
[+] /usr (external libtool-2.4.6-snb3wjzerg4q7w57akrhqlg2hfvalawy)
[+] /usr (external perl-5.26.3-cfeod657avcbjzlstrxizeulrdfnqb3r)
[+] /opt/FJSVxtclanga/tcsds-latest (external fujitsu-mpi-head-zlunfezjmwzq5pfrxkeb3tpfc6ja5cxz)
[+] /usr (external hwloc-2.2.0-rmis2olps5il7dl7dva6guws6hdyyqjt)
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/cmake-3.21.4-vgsk3aw6j4szlnkzjz3u57u7qtoosnkz
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/libmd-1.0.3-stbabcescctoosfu2nwuv5cekryi4p4g
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/libxc-5.1.5-3a6clqa4lq5lmxpbtddwrq6hsueb5swe
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/texinfo-6.5-dqgnoe2tyqkmtth6epsjkfp5uwgwvtwz
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/eigen-3.4.0-e7wcgbdlufc4qo4cfhowtlgol2vweytr
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/hdf5-1.10.7-27uylmg4ru4wkllb5x37g752qfjf7anu
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/libbsd-0.11.3-xiejcn74x7lxnfv2gl3k2zsohzdun57v
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/fujitsu-fftw-1.0.0-iojkoizh7frkvgrgpf3yreokhhqspxpu
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/expat-2.4.1-6d5wgt5slcremuk5p6srspiodqufzm3h
==> Installing gromacs-2019.6-jiljr4grros5m6eam6rodqowqrvrd46c
==> No binary for gromacs-2019.6-jiljr4grros5m6eam6rodqowqrvrd46c found: installing from source
==> Using cached archive: /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/var/spack/cache/_source-cache/archive/be/bebe396dc0db11a9d4cc205abc13b50d88225617642508168a2195324f06a358.tar.gz
==> Ran patch() for gromacs
==> gromacs: Executing phase: 'cmake'
==> Error: ProcessError: Command exited with status 1:
'cmake' '-G' 'Unix Makefiles' '-DCMAKE_INSTALL_PREFIX:STRING=/vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/gromacs-2019.6-jiljr4grros5m6eam6rodqowqrvrd46c' '-DCMAKE_BUILD_TYPE:STRING=RelWithDebInfo' '-DCMAKE_INTERPROCEDURAL_OPTIMIZATION:BOOL=OFF' '-DCMAKE_VERBOSE_MAKEFILE:BOOL=ON' '-DCMAKE_INSTALL_RPATH_USE_LINK_PATH:BOOL=OFF' '-DCMAKE_INSTALL_RPATH:STRING=/vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/gromacs-2019.6-jiljr4grros5m6eam6rodqowqrvrd46c/lib;/vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/gromacs-2019.6-jiljr4grros5m6eam6rodqowqrvrd46c/lib64;/vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/fujitsu-fftw-1.0.0-iojkoizh7frkvgrgpf3yreokhhqspxpu/lib;/opt/FJSVxtclanga/tcsds-latest/lib;/vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/texinfo-6.5-dqgnoe2tyqkmtth6epsjkfp5uwgwvtwz/lib;/opt/FJSVxtclanga/tcsds-latest/lib64' '-DCMAKE_PREFIX_PATH:STRING=/vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/fujitsu-fftw-1.0.0-iojkoizh7frkvgrgpf3yreokhhqspxpu;/vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/texinfo-6.5-dqgnoe2tyqkmtth6epsjkfp5uwgwvtwz;/vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/cmake-3.21.4-vgsk3aw6j4szlnkzjz3u57u7qtoosnkz;/opt/FJSVxtclanga/tcsds-latest' '-DCMAKE_C_COMPILER=/vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/lib/spack/env/fj/fcc' '-DCMAKE_CXX_COMPILER=/vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/lib/spack/env/fj/case-insensitive/FCC' '-DGMX_MPI:BOOL=OFF' '-DGMX_THREAD_MPI:BOOL=ON' '-DGMX_HWLOC:BOOL=ON' '-DGMX_GPU:BOOL=OFF' '-DGMX_EXTERNAL_LAPACK:BOOL=OFF' '-DGMX_EXTERNAL_BLAS:BOOL=OFF' '-DGMX_SIMD=ARM_NEON_ASIMD' '-DGMX_USE_RDTSCP:BOOL=OFF' '-DGMX_BUILD_MDRUN_ONLY:BOOL=OFF' '-DGMX_OPENMP:BOOL=ON' '-DGMX_RELAXED_DOUBLE_PRECISION:BOOL=OFF' '-DGMX_CYCLE_SUBCOUNTERS:BOOL=OFF' '-DGMX_FFT_LIBRARY=fftw3' '-DGMX_VERSION_STRING_OF_FORK=spack' '/home/rccs-sdt/a01008/spack-stage/spack-stage-gromacs-2019.6-jiljr4grros5m6eam6rodqowqrvrd46c/spack-src'

1 error found in build log:
89 -- Checking for _mm_malloc() - supported
90 -- Looking for posix_memalign
91 -- Looking for posix_memalign - found
92 -- Looking for memalign
93 -- Looking for memalign - not found
94 -- Could NOT find Hwloc (missing: HWLOC_LIBRARIES HWLOC_INCLUDE_DIRS
) (Required is at least version "1.5")
>> 95 CMake Error at CMakeLists.txt:530 (message):
96 Hwloc package support required, but not found.
97
98
99 -- Configuring incomplete, errors occurred!
100 See also "/vol0003/rccs-sdt/a01008/spack-stage/spack-stage-gromacs-2
019.6-jiljr4grros5m6eam6rodqowqrvrd46c/spack-build-jiljr4g/CMakeFile
s/CMakeOutput.log".
101 See also "/vol0003/rccs-sdt/a01008/spack-stage/spack-stage-gromacs-2
019.6-jiljr4grros5m6eam6rodqowqrvrd46c/spack-build-jiljr4g/CMakeFile
s/CMakeError.log".

See build log for details:
/home/rccs-sdt/a01008/spack-stage/spack-stage-gromacs-2019.6-jiljr4grros5m6eam6rodqowqrvrd46c/spack-build-out.txt

==> Warning: Skipping build of votca-csg-2021.2-2am4lchdjypfdy5hlnbscgp3jw4bmrnf since gromacs-2019.6-jiljr4grros5m6eam6rodqowqrvrd46c failed
==> Warning: Skipping build of votca-xtp-2021.2-4f5g2phqao2b2zh4y5kzjrqjosgch5u6 since votca-csg-2021.2-2am4lchdjypfdy5hlnbscgp3jw4bmrnf failed
==> Warning: boost-1.77.0-tfuifjz2phadvkgys7c237zb3uj4noi5 failed to install
==> Warning: Skipping build of libint-2.6.0-33qly25r5rxbrhsfxvc67isgzbs4sftk since boost-1.77.0-tfuifjz2phadvkgys7c237zb3uj4noi5 failed
==> Warning: Skipping build of votca-tools-2021.2-crrslgibk7cyg2wjc7jtyt4tfvk3uiuo since boost-1.77.0-tfuifjz2phadvkgys7c237zb3uj4noi5 failed
==> Error: votca-xtp-2021.2-4f5g2phqao2b2zh4y5kzjrqjosgch5u6: Package was not installed
==> Error: Installation request failed. Refer to reported errors for failing package(s).


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