List of Open Source Software which can be built on Fugaku

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Spack will be used to manage open source software packages on Fugaku. Fugaku users can easily use pre-installed packages and built packages based on Spack recipes. The following list shows the results of building/compiling packages for aarch64 according to the Spack recipes. Note that the results in this list do not guarantee that each package will work properly. On the other hand, Fujitsu will provide the following packages compiled with Fujitsu compiler on Fugaku as "external" packages, of which Spack can be aware.
  • OpenJDK 11
  • Ruby 2.6.5 or later
  • Python2 2.7.15
  • Python3 3.6.8
  • Numpy 1.14.3
  • SciPy 1.0.0
  • Eclipse IDE 2019-09 R Packages
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admixtools 7.0.2

Compiler Fujitsu Compiler Fujitsu C/C++ Compiler 4.10.0 tcsds-1.2.38
Result Dependency Error

Failed Reason

Failed to install dependency package :
------------------------------------------------
==> Warning: config:terminal_title has been replaced by install_status and is ignored
==> Warning: Failed to initialize repository: '$spack/var/spack/repos/local'.
No repo.yaml found in '$spack/var/spack/repos/local'
To remove the bad repository, run this command:
spack repo rm $spack/var/spack/repos/local
[+] /opt/FJSVxtclanga/tcsds-ssl2-latest (external fujitsu-ssl2-head-7eif42hdxt2tixz7cufiyhj62kz3jntb)
[+] /usr (external gmake-4.2.1-eszqmok6vi6wxcmklx6bqloeidbh25kb)
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/gnuconfig-2022-09-17-w33oejhx46ex2iql4orzjqdmt2kdqdb2
==> Installing gsl-2.7.1-6mx2lcmimqbuoeralzd5dqmp7f73t77k [4/5]
==> No binary for gsl-2.7.1-6mx2lcmimqbuoeralzd5dqmp7f73t77k found: installing from source
==> Fetching https://spack-llnl-mirror.s3-us-west-2.amazonaws.com/_source-cache/archive/dc/dcb0fbd43048832b757ff9942691a8dd70026d5da0ff85601e52687f6deeb34b.tar.gz
==> No patches needed for gsl
==> gsl: Executing phase: 'autoreconf'
==> gsl: Executing phase: 'configure'
==> gsl: Executing phase: 'build'
==> gsl: Executing phase: 'install'
==> gsl: Successfully installed gsl-2.7.1-6mx2lcmimqbuoeralzd5dqmp7f73t77k
Stage: 1m 2.78s. Autoreconf: 1.53s. Configure: 2m 22.59s. Build: 28m 56.22s. Install: 1m 11.19s. Post-install: 4.77s. Total: 33m 40.37s
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/gsl-2.7.1-6mx2lcmimqbuoeralzd5dqmp7f73t77k
==> Installing admixtools-7.0.2-si3xozry3xkx25bb6pdw26geul3j3hjd [5/5]
==> No binary for admixtools-7.0.2-si3xozry3xkx25bb6pdw26geul3j3hjd found: installing from source
==> Fetching https://spack-llnl-mirror.s3-us-west-2.amazonaws.com/_source-cache/archive/d1/d1dc1963e01017f40e05e28009008e14388a14a3facc75cff46653da585bd91e.tar.gz
==> No patches needed for admixtools
==> admixtools: Executing phase: 'edit'
==> admixtools: Executing phase: 'build'
==> Error: ProcessError: Command exited with status 2:
'make' '-j16'

39 errors found in build log:
228 ^
229 cc -g -L./nicksrc qpreroot.o qpgsubs.o qpsubs.o mcio.o ldsubs.o a
dmutils.o egsubs.o regsubs.o -lgsl -lopenblas -lm -lnick -o qprero
ot
230 3 warnings generated.
231 cc -g -L./nicksrc qpff3base.o nicksrc/libnick.a qpgsubs.o qpsubs.
o mcio.o admutils.o egsubs.o regsubs.o ldsubs.o -lgsl -lopenblas -
lm -lnick -o qpff3base
232 clang-7: warning: argument unused during compilation: '-p' [-Wunuse
d-command-line-argument]
233 cc -g -L./nicksrc qpDpart.o nicksrc/libnick.a qpsubs.o mcio.o lds
ubs.o admutils.o egsubs.o regsubs.o -lgsl -lopenblas -lm -lnick -o
qpDpart
>> 234 /usr/bin/ld: cannot find -lopenblas
>> 235 /usr/bin/ld: cannot find -lopenblas
>> 236 clang-7: error: linker command failed with exit code 1 (use -v to s
ee invocation)
>> 237 make: *** [<builtin>: qp3Pop] Error 1
238 make: *** Waiting for unfinished jobs....
>> 239 /usr/bin/ld: cannot find -lopenblas
>> 240 clang-7: error: linker command failed with exit code 1 (use -v to s
ee invocation)
>> 241 make: *** [<builtin>: qpDstat] Error 1
>> 242 clang-7: error: linker command failed with exit code 1 (use -v to s
ee invocation)
>> 243 make: *** [<builtin>: qpF4ratio] Error 1
>> 244 /usr/bin/ld: cannot find -lopenblas
>> 245 clang-7: error: linker command failed with exit code 1 (use -v to s
ee invocation)
>> 246 make: *** [<builtin>: qpAdm] Error 1
>> 247 /usr/bin/ld: cannot find -lopenblas
>> 248 clang-7: error: linker command failed with exit code 1 (use -v to s
ee invocation)
>> 249 make: *** [<builtin>: qpWave] Error 1
>> 250 /usr/bin/ld: cannot find -lopenblas
>> 251 /usr/bin/ld: cannot find -lopenblas
>> 252 clang-7: error: linker command failed with exit code 1 (use -v to s
ee invocation)
>> 253 make: *** [<builtin>: qp4diff] Error 1
>> 254 clang-7: error: linker command failed with exit code 1 (use -v to s
ee invocation)
>> 255 make: *** [<builtin>: qpdslow] Error 1
>> 256 /usr/bin/ld: cannot find -lopenblas
>> 257 clang-7: error: linker command failed with exit code 1 (use -v to s
ee invocation)
>> 258 make: *** [<builtin>: dowtjack] Error 1
>> 259 /usr/bin/ld: cannot find -lopenblas
>> 260 clang-7: error: linker command failed with exit code 1 (use -v to s
ee invocation)
>> 261 make: *** [<builtin>: qpBound] Error 1
262 kimf.c:1645:108: warning: format specifies type 'unsigned int' but
the argument has type 'void *' [-Wformat]
263 if (verbose) printf("largeliter: %d xcload xchit: %d %d %x score
: %12.6f\n", largeliter, xcload, xchit, topheap(), lastkimscore) ;
264 ~~
^~~~~~~~~
>> 265 /usr/bin/ld: cannot find -lopenblas
266 kimf.c:1953:44: warning: more '%' conversions than data arguments [
-Wformat]
267 printf("zz3 %15.9f %12.6f %12.6f %12.6f %12.6f\n", y2, y1, y1
*y2) ;
268 ~~~~~^
>> 269 clang-7: error: linker command failed with exit code 1 (use -v to s
ee invocation)
>> 270 make: *** [<builtin>: qpGraph] Error 1
271 gslkim.c:120:32: warning: format specifies type 'unsigned int' but
the argument has type 'void *' [-Wformat]
272 printf("zzheap: %x\n", topheap()) ;
273 ~~ ^~~~~~~~~
>> 274 /usr/bin/ld: cannot find -lopenblas
275 1 warning generated.
>> 276 clang-7: error: linker command failed with exit code 1 (use -v to s
ee invocation)
>> 277 /usr/bin/ld: cannot find -lopenblas
>> 278 make: *** [<builtin>: qpreroot] Error 1
>> 279 clang-7: error: linker command failed with exit code 1 (use -v to s
ee invocation)
>> 280 make: *** [<builtin>: qpff3base] Error 1
>> 281 /usr/bin/ld: cannot find -lopenblas
>> 282 clang-7: error: linker command failed with exit code 1 (use -v to s
ee invocation)
>> 283 make: *** [<builtin>: qpDpart] Error 1
284 gcount.c:863:1: warning: control may reach end of non-void function
[-Wreturn-type]
285 }
286 ^
287 gcount.c:893:1: warning: control may reach end of non-void function
[-Wreturn-type]
288 }
289 ^

See build log for details:
/data/rccs-sdt/a01008/tmpdir/spack-stage/spack-stage-admixtools-7.0.2-si3xozry3xkx25bb6pdw26geul3j3hjd/spack-build-out.txt


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