Failed Reason

Failed to install dependency package :
------------------------------------------------
==> No patches needed for htslib
==> htslib: Executing phase: 'autoreconf'
==> htslib: Executing phase: 'configure'
==> htslib: Executing phase: 'build'
==> Error: ProcessError: Command exited with status 2:
'make' '-j16' 'V=1'

1 error found in build log:
84 ==> [2024-03-09-00:10:14.681179] Find (recursive): /data/rccs-sdt/a0
1008/tmpdir/spack-stage/spack-stage-htslib-1.16-6n5zcm7iofcvxaebwu2q
5yztkqh66y7j/spack-src ['libtool']
85 ==> [2024-03-09-00:10:14.753226] Find complete: /data/rccs-sdt/a0100
8/tmpdir/spack-stage/spack-stage-htslib-1.16-6n5zcm7iofcvxaebwu2q5yz
tkqh66y7j/spack-src ['libtool']
86 ==> htslib: Executing phase: 'build'
87 ==> [2024-03-09-00:10:14.800455] 'make' '-j16' 'V=1'
88 make: Makefile: Too many levels of symbolic links
89 make: stat: Makefile: Too many levels of symbolic links
>> 90 make: *** No rule to make target 'Makefile'. Stop.

See build log for details:
/data/rccs-sdt/a01008/tmpdir/spack-stage/spack-stage-htslib-1.16-6n5zcm7iofcvxaebwu2q5yztkqh66y7j/spack-build-out.txt

==> Warning: Skipping build of bcftools-1.16-kus44edq22dsvhax7jb4qfand5uuzbqt since htslib-1.16-6n5zcm7iofcvxaebwu2q5yztkqh66y7j failed
==> Warning: Skipping build of augustus-3.3.2-beudgnk2w5awyyrfx5uyxojlsnk6yz5d since bcftools-1.16-kus44edq22dsvhax7jb4qfand5uuzbqt failed
==> Warning: Skipping build of samtools-1.16.1-fetxy3tvmw24a2b5yghpvc4rtk7lq2t7 since htslib-1.16-6n5zcm7iofcvxaebwu2q5yztkqh66y7j failed
==> Installing py-cppy-1.1.0-m6whhgemcvpki3sy6qiy7zcdxipuijno [31/46]
==> No binary for py-cppy-1.1.0-m6whhgemcvpki3sy6qiy7zcdxipuijno found: installing from source
==> Fetching https://spack-llnl-mirror.s3-us-west-2.amazonaws.com/_source-cache/archive/4e/4eda6f1952054a270f32dc11df7c5e24b259a09fddf7bfaa5f33df9fb4a29642.tar.gz
==> No patches needed for py-cppy
==> py-cppy: Executing phase: 'install'
==> py-cppy: Successfully installed py-cppy-1.1.0-m6whhgemcvpki3sy6qiy7zcdxipuijno
Stage: 1.64s. Install: 23.16s. Post-install: 0.87s. Total: 26.34s
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/py-cppy-1.1.0-m6whhgemcvpki3sy6qiy7zcdxipuijno
==> Installing py-certifi-2023.7.22-ozdat7skdtwlgvqa3izx45wdprkhcdm6 [32/46]
==> No binary for py-certifi-2023.7.22-ozdat7skdtwlgvqa3izx45wdprkhcdm6 found: installing from source
==> Fetching https://spack-llnl-mirror.s3-us-west-2.amazonaws.com/_source-cache/archive/53/539cc1d13202e33ca466e88b2807e29f4c13049d6d87031a3c110744495cb082.tar.gz
==> No patches needed for py-certifi
==> py-certifi: Executing phase: 'install'
==> py-certifi: Successfully installed py-certifi-2023.7.22-ozdat7skdtwlgvqa3izx45wdprkhcdm6
Stage: 1.70s. Install: 7.09s. Post-install: 0.82s. Total: 10.08s
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/py-certifi-2023.7.22-ozdat7skdtwlgvqa3izx45wdprkhcdm6
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/py-cython-3.0.4-7sdgkmtvjntri7top7bfm2hd5u7drmyc
==> Installing py-cycler-0.11.0-fiqjq76lja3xb3m3kgjwbptkuripevdx [34/46]
==> No binary for py-cycler-0.11.0-fiqjq76lja3xb3m3kgjwbptkuripevdx found: installing from source
==> Fetching https://spack-llnl-mirror.s3-us-west-2.amazonaws.com/_source-cache/archive/9c/9c87405839a19696e837b3b818fed3f5f69f16f1eec1a1ad77e043dcea9c772f.tar.gz
==> No patches needed for py-cycler
==> py-cycler: Executing phase: 'install'
==> py-cycler: Successfully installed py-cycler-0.11.0-fiqjq76lja3xb3m3kgjwbptkuripevdx
Stage: 1.42s. Install: 6.68s. Post-install: 0.76s. Total: 9.33s
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/py-cycler-0.11.0-fiqjq76lja3xb3m3kgjwbptkuripevdx
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/py-tomli-2.0.1-jsxdxnw7umod72hqs44hg5bn5n6dc7ri
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/py-pyproject-metadata-0.7.1-fs3vme4uqputh5py6ykygic6maqw3tlh
==> Installing py-pyparsing-3.0.9-x5syhgdsq2rgfco4tamxymq5hxzr2z42 [37/46]
==> No binary for py-pyparsing-3.0.9-x5syhgdsq2rgfco4tamxymq5hxzr2z42 found: installing from source
==> Fetching https://spack-llnl-mirror.s3-us-west-2.amazonaws.com/_source-cache/archive/2b/2b020ecf7d21b687f219b71ecad3631f644a47f01403fa1d1036b0c6416d70fb.tar.gz
==> No patches needed for py-pyparsing
==> py-pyparsing: Executing phase: 'install'
==> py-pyparsing: Successfully installed py-pyparsing-3.0.9-x5syhgdsq2rgfco4tamxymq5hxzr2z42
Stage: 11.86s. Install: 7.24s. Post-install: 0.92s. Total: 20.59s
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/py-pyparsing-3.0.9-x5syhgdsq2rgfco4tamxymq5hxzr2z42
==> Installing py-six-1.16.0-ztq6x5ahyilyk723qkmrff772hjcllpa [38/46]
==> No binary for py-six-1.16.0-ztq6x5ahyilyk723qkmrff772hjcllpa found: installing from source
==> Fetching https://spack-llnl-mirror.s3-us-west-2.amazonaws.com/_source-cache/archive/1e/1e61c37477a1626458e36f7b1d82aa5c9b094fa4802892072e49de9c60c4c926.tar.gz
==> No patches needed for py-six
==> py-six: Executing phase: 'install'
==> py-six: Successfully installed py-six-1.16.0-ztq6x5ahyilyk723qkmrff772hjcllpa
Stage: 1.41s. Install: 6.60s. Post-install: 0.77s. Total: 9.25s
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/py-six-1.16.0-ztq6x5ahyilyk723qkmrff772hjcllpa
==> Installing py-pillow-10.0.0-ywh46f5x74warwd5tthvjqvzvtanusm5 [39/46]
==> No binary for py-pillow-10.0.0-ywh46f5x74warwd5tthvjqvzvtanusm5 found: installing from source
==> Fetching https://spack-llnl-mirror.s3-us-west-2.amazonaws.com/_source-cache/archive/9c/9c82b5b3e043c7af0d95792d0d20ccf68f61a1fec6b3530e718b688422727396.tar.gz
==> Ran patch() for py-pillow
==> py-pillow: Executing phase: 'install'
==> py-pillow: Successfully installed py-pillow-10.0.0-ywh46f5x74warwd5tthvjqvzvtanusm5
Stage: 36.00s. Install: 2m 31.97s. Post-install: 2.37s. Total: 3m 12.15s
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/py-pillow-10.0.0-ywh46f5x74warwd5tthvjqvzvtanusm5
==> Installing py-kiwisolver-1.3.2-opt7cium5krzk2oimmyz6dh543lha72x [40/46]
==> No binary for py-kiwisolver-1.3.2-opt7cium5krzk2oimmyz6dh543lha72x found: installing from source
==> Fetching https://spack-llnl-mirror.s3-us-west-2.amazonaws.com/_source-cache/archive/fc/fc4453705b81d03568d5b808ad8f09c77c47534f6ac2e72e733f9ca4714aa75c.tar.gz
==> No patches needed for py-kiwisolver
==> py-kiwisolver: Executing phase: 'install'
==> py-kiwisolver: Successfully installed py-kiwisolver-1.3.2-opt7cium5krzk2oimmyz6dh543lha72x
Stage: 2.42s. Install: 58.89s. Post-install: 0.82s. Total: 1m 2.71s
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/py-kiwisolver-1.3.2-opt7cium5krzk2oimmyz6dh543lha72x
==> Installing py-numpy-1.26.1-brmrviclbqnhu4f3swabbqjwk5pjz3yw [41/46]
==> No binary for py-numpy-1.26.1-brmrviclbqnhu4f3swabbqjwk5pjz3yw found: installing from source
==> Using cached archive: /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/var/spack/cache/_source-cache/archive/c8/c8c6c72d4a9f831f328efb1312642a1cafafaa88981d9ab76368d50d07d93cbe.tar.gz
==> Applied patch /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/var/spack/repos/builtin/packages/py-numpy/check_executables.patch
==> py-numpy: Executing phase: 'install'
==> Error: ProcessError: Command exited with status 1:
'/vol0004/apps/oss/spack-v0.19/opt/spack/linux-rhel8-a64fx/fj-4.8.1/python-3.10.8-7q66snjvhvy7im57hncbgpirmddrb5sk/bin/python3.10' '-m' 'pip' '-vvv' '--no-input' '--no-cache-dir' '--disable-pip-version-check' 'install' '--no-deps' '--ignore-installed' '--no-build-isolation' '--no-warn-script-location' '--no-index' '--prefix=/vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/py-numpy-1.26.1-brmrviclbqnhu4f3swabbqjwk5pjz3yw' '--config-settings=builddir=build' '--config-settings=compile-args=-j16' '--config-settings=setup-args=-Dblas=fjlapackexsve' '--config-settings=setup-args=-Dlapack=fjlapackexsve' '.'

2 errors found in build log:
64
65 Library m found: YES
66 Found CMake: /usr/bin/cmake (3.20.2)
67 WARNING: CMake Toolchain: Failed to determine CMake compilers stat
e
68 Run-time dependency fjlapackexsve found: NO (tried pkgconfig and c
make)
69
>> 70 ../numpy/meson.build:169:4: ERROR: Problem encountered: No BLAS libr
ary detected! Install one, or use the `allow-noblas` build option (n
ote, this may be up to 100x slower for some linear algebra operation
s).
71
72 A full log can be found at /vol0003/rccs-sdt/data/a01008/tmpdir/sp
ack-stage/spack-stage-py-numpy-1.26.1-brmrviclbqnhu4f3swabbqjwk5pjz3
yw/spack-src/build/meson-logs/meson-log.txt
73 error: subprocess-exited-with-error
74
75 × Preparing metadata (pyproject.toml) did not run successfully.
76 │ exit code: 1
77 ╰─> See above for output.
78
79 note: This error originates from a subprocess, and is likely not a
problem with pip.
80 full command: /vol0004/apps/oss/spack-v0.19/opt/spack/linux-rhel8-
a64fx/fj-4.8.1/python-3.10.8-7q66snjvhvy7im57hncbgpirmddrb5sk/bin/py
thon3.10 /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/s
pack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/py-pip-23.1.2-e5mqkkojghz
4zpl6zboxzql3mko55ccd/lib/python3.10/site-packages/pip/_vendor/pypro
ject_hooks/_in_process/_in_process.py prepare_metadata_for_build_whe
el /data/rccs-sdt/a01008/tmpdir/tmpf6gs0wgp
81 cwd: /vol0003/rccs-sdt/data/a01008/tmpdir/spack-stage/spack-stage-
py-numpy-1.26.1-brmrviclbqnhu4f3swabbqjwk5pjz3yw/spack-src
82 Preparing metadata (pyproject.toml): finished with status 'error'
>> 83 error: metadata-generation-failed
84
85 × Encountered error while generating package metadata.
86 ╰─> See above for output.
87
88 note: This is an issue with the package mentioned above, not pip.
89 hint: See above for details.

See build log for details:
/data/rccs-sdt/a01008/tmpdir/spack-stage/spack-stage-py-numpy-1.26.1-brmrviclbqnhu4f3swabbqjwk5pjz3yw/spack-build-out.txt

==> Warning: Skipping build of py-matplotlib-3.3.4-uvahwxwwhsx7vox3nce33czaojh3nai6 since py-numpy-1.26.1-brmrviclbqnhu4f3swabbqjwk5pjz3yw failed
==> Installing py-python-dateutil-2.5.2-hnnnls4s3lrlztmuojqkwkrylheinba2 [42/46]
==> No binary for py-python-dateutil-2.5.2-hnnnls4s3lrlztmuojqkwkrylheinba2 found: installing from source
==> Fetching https://spack-llnl-mirror.s3-us-west-2.amazonaws.com/_source-cache/archive/06/063907ef47f6e187b8fe0728952e4effb587a34f2dc356888646f9b71fbb2e4b.tar.gz
==> No patches needed for py-python-dateutil
==> py-python-dateutil: Executing phase: 'install'
==> py-python-dateutil: Successfully installed py-python-dateutil-2.5.2-hnnnls4s3lrlztmuojqkwkrylheinba2
Stage: 2.23s. Install: 14.24s. Post-install: 1.16s. Total: 1m 36.30s
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/py-python-dateutil-2.5.2-hnnnls4s3lrlztmuojqkwkrylheinba2
==> Error: augustus-3.3.2-beudgnk2w5awyyrfx5uyxojlsnk6yz5d: Package was not installed
==> Error: Installation request failed. Refer to reported errors for failing package(s).