List of Open Source Software which can be built on Fugaku

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Spack will be used to manage open source software packages on Fugaku. Fugaku users can easily use pre-installed packages and built packages based on Spack recipes. The following list shows the results of building/compiling packages for aarch64 according to the Spack recipes. Note that the results in this list do not guarantee that each package will work properly. On the other hand, Fujitsu will provide the following packages compiled with Fujitsu compiler on Fugaku as "external" packages, of which Spack can be aware.
  • OpenJDK 11
  • Ruby 2.6.5 or later
  • Python2 2.7.15
  • Python3 3.6.8
  • Numpy 1.14.3
  • SciPy 1.0.0
  • Eclipse IDE 2019-09 R Packages
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autodock-vina 1.2.3

Compiler Fujitsu Compiler Fujitsu C/C++ Compiler 4.10.0 tcsds-1.2.38
Result Dependency Error

Failed Reason

Failed to install dependency package :
------------------------------------------------
==> Warning: config:terminal_title has been replaced by install_status and is ignored
==> Warning: Failed to initialize repository: '$spack/var/spack/repos/local'.
No repo.yaml found in '$spack/var/spack/repos/local'
To remove the bad repository, run this command:
spack repo rm $spack/var/spack/repos/local
==> Installing boost-1.83.0-q5ecxttaocdeccjlvmkszqic3d4vxb56 [1/3]
==> No binary for boost-1.83.0-q5ecxttaocdeccjlvmkszqic3d4vxb56 found: installing from source
==> Using cached archive: /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/var/spack/cache/_source-cache/archive/64/6478edfe2f3305127cffe8caf73ea0176c53769f4bf1585be237eb30798c3b8e.tar.bz2
==> Applied patch /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/var/spack/repos/builtin/packages/boost/fujitsu_version_analysis-1.77.patch
==> Applied patch /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/var/spack/repos/builtin/packages/boost/bootstrap-compiler.patch
==> Ran patch() for boost
==> boost: Executing phase: 'install'
==> boost: Successfully installed boost-1.83.0-q5ecxttaocdeccjlvmkszqic3d4vxb56
Stage: 25m 1.32s. Install: 22m 8.65s. Post-install: 6m 4.37s. Total: 53m 16.17s
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/boost-1.83.0-q5ecxttaocdeccjlvmkszqic3d4vxb56
[+] /usr (external gmake-4.2.1-eszqmok6vi6wxcmklx6bqloeidbh25kb)
==> Installing autodock-vina-1.2.3-wq7t7w5qvohkvgoekiwhccu3nup2ky4h [3/3]
==> No binary for autodock-vina-1.2.3-wq7t7w5qvohkvgoekiwhccu3nup2ky4h found: installing from source
==> Fetching https://spack-llnl-mirror.s3-us-west-2.amazonaws.com/_source-cache/archive/22/22f85b2e770b6acc363429153b9551f56e0a0d88d25f747a40d2f55a263608e0.tar.gz
==> No patches needed for autodock-vina
==> autodock-vina: Executing phase: 'edit'
==> autodock-vina: Executing phase: 'build'
==> Error: ProcessError: Command exited with status 2:
'make' '-j16'

3 errors found in build log:
151 # warning "The minimum language standard to use Boost.Math will
be C++14 starting in July 2023 (Boost 1.82 release)"
152 ^
153 1 warning generated.
154 1 warning generated.
155 In file included from ../../../src/lib/parallel_mc.cpp:26:
156 In file included from ../../../src/lib/parallel_progress.h:26:
>> 157 /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt
/spack/linux-rhel8-a64fx/fj-4.10.0/boost-1.83.0-q5ecxttaocdeccjlvmk
szqic3d4vxb56/include/boost/progress.hpp:23:3: error: This header i
s deprecated and will be removed. (You can define BOOST_TIMER_ENABL
E_DEPRECATED to suppress this error.)
158 # error This header is deprecated and will be removed. (You can def
ine BOOST_TIMER_ENABLE_DEPRECATED to suppress this error.)
159 ^
160 /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt
/spack/linux-rhel8-a64fx/fj-4.10.0/boost-1.83.0-q5ecxttaocdeccjlvmk
szqic3d4vxb56/include/boost/progress.hpp:27:1: warning: This header
is deprecated. Use the facilities in <boost/timer/timer.hpp> or <b
oost/timer/progress_display.hpp> instead. [-W#pragma-messages]
161 BOOST_HEADER_DEPRECATED( "the facilities in <boost/timer/timer.hpp>
or <boost/timer/progress_display.hpp>" )
162 ^
163 /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt
/spack/linux-rhel8-a64fx/fj-4.10.0/boost-1.83.0-q5ecxttaocdeccjlvmk
szqic3d4vxb56/include/boost/config/header_deprecated.hpp:23:37: not
e: expanded from macro 'BOOST_HEADER_DEPRECATED'

...

169 <scratch space>:87:2: note: expanded from here
170 message("This header is deprecated. Use " "the facilities in <boos
t/timer/timer.hpp> or <boost/timer/progress_display.hpp>" " instead
.")
171 ^
172 In file included from ../../../src/lib/parallel_mc.cpp:26:
173 In file included from ../../../src/lib/parallel_progress.h:26:
174 In file included from /vol0003/rccs-sdt/data/a01008/spack-all-test/
env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/boost-1.83
.0-q5ecxttaocdeccjlvmkszqic3d4vxb56/include/boost/progress.hpp:29:
>> 175 /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt
/spack/linux-rhel8-a64fx/fj-4.10.0/boost-1.83.0-q5ecxttaocdeccjlvmk
szqic3d4vxb56/include/boost/timer.hpp:21:3: error: This header is d
eprecated and will be removed. (You can define BOOST_TIMER_ENABLE_D
EPRECATED to suppress this error.)
176 # error This header is deprecated and will be removed. (You can def
ine BOOST_TIMER_ENABLE_DEPRECATED to suppress this error.)
177 ^
178 /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt
/spack/linux-rhel8-a64fx/fj-4.10.0/boost-1.83.0-q5ecxttaocdeccjlvmk
szqic3d4vxb56/include/boost/timer.hpp:25:1: warning: This header is
deprecated. Use the facilities in <boost/timer/timer.hpp> instead.
[-W#pragma-messages]
179 BOOST_HEADER_DEPRECATED( "the facilities in <boost/timer/timer.hpp>
" )
180 ^
181 /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt
/spack/linux-rhel8-a64fx/fj-4.10.0/boost-1.83.0-q5ecxttaocdeccjlvmk
szqic3d4vxb56/include/boost/config/header_deprecated.hpp:23:37: not
e: expanded from macro 'BOOST_HEADER_DEPRECATED'

...

186 ^
187 <scratch space>:90:2: note: expanded from here
188 message("This header is deprecated. Use " "the facilities in <boos
t/timer/timer.hpp>" " instead.")
189 ^
190 1 warning generated.
191 3 warnings and 2 errors generated.
>> 192 make: *** [../../makefile_common:33: parallel_mc.o] Error 1
193 make: *** Waiting for unfinished jobs....
194 1 warning generated.
195 1 warning generated.
196 1 warning generated.
197 1 warning generated.
198 1 warning generated.

See build log for details:
/data/rccs-sdt/a01008/tmpdir/spack-stage/spack-stage-autodock-vina-1.2.3-wq7t7w5qvohkvgoekiwhccu3nup2ky4h/spack-build-out.txt


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