List of Open Source Software which can be built on Fugaku
 |
Spack will be used to manage open source software packages on Fugaku.
Fugaku users can easily use pre-installed packages and built packages based on Spack recipes.
The following list shows the results of building/compiling packages for aarch64 according to the Spack recipes.
Note that the results in this list do not guarantee that each package will work properly.
On the other hand, Fujitsu will provide the following packages compiled with Fujitsu compiler on Fugaku as "external" packages, of which Spack can be aware.
|
bam-readcount 1.0.1
| Compiler | Fujitsu Compiler Fujitsu C/C++ Compiler 4.10.0 tcsds-1.2.38 |
|---|---|
| Result | Dependency Error |
Failed Reason
Failed to install dependency package :
------------------------------------------------
a/a01008/tmpdir/spack-stage/spack-stage-bam-readcount-1.0.1-3jlgb7
q7iecrnx2w4zmmk6ql6wom5hew/spack-build-3jlgb7q/vendor/boost/includ
e -I/vol0003/rccs-sdt/data/a01008/tmpdir/spack-stage/spack-stage-b
am-readcount-1.0.1-3jlgb7q7iecrnx2w4zmmk6ql6wom5hew/spack-build-3j
lgb7q/vendor/samtools-1.10 -I/vol0003/rccs-sdt/data/a01008/tmpdir/
spack-stage/spack-stage-bam-readcount-1.0.1-3jlgb7q7iecrnx2w4zmmk6
ql6wom5hew/spack-build-3jlgb7q/vendor/samtools-1.10/htslib-1.10 -I
/data/rccs-sdt/a01008/tmpdir/spack-stage/spack-stage-bam-readcount
-1.0.1-3jlgb7q7iecrnx2w4zmmk6ql6wom5hew/spack-src/src/lib -Wall -s
td=c++0x -O3 -DNDEBUG -MD -MT build/src/lib/bamrc/CMakeFiles/bamrc
.dir/BasicStat.cpp.o -MF CMakeFiles/bamrc.dir/BasicStat.cpp.o.d -o
CMakeFiles/bamrc.dir/BasicStat.cpp.o -c /data/rccs-sdt/a01008/tmp
dir/spack-stage/spack-stage-bam-readcount-1.0.1-3jlgb7q7iecrnx2w4z
mmk6ql6wom5hew/spack-src/src/lib/bamrc/BasicStat.cpp
2273 [ 73%] Building CXX object build/src/lib/bamrc/CMakeFiles/bamrc.di
r/IndelQueueEntry.cpp.o
2274 cd /vol0003/rccs-sdt/data/a01008/tmpdir/spack-stage/spack-stage-ba
m-readcount-1.0.1-3jlgb7q7iecrnx2w4zmmk6ql6wom5hew/spack-build-3jl
gb7q/build/src/lib/bamrc && /vol0003/rccs-sdt/data/a01008/spack-al
l-test/env-20240227/spack/lib/spack/env/fj/case-insensitive/FCC -
I/vol0003/rccs-sdt/data/a01008/tmpdir/spack-stage/spack-stage-bam-
readcount-1.0.1-3jlgb7q7iecrnx2w4zmmk6ql6wom5hew/spack-build-3jlgb
7q/vendor/src/gtest160/include -I/vol0003/rccs-sdt/data/a01008/tmp
dir/spack-stage/spack-stage-bam-readcount-1.0.1-3jlgb7q7iecrnx2w4z
mmk6ql6wom5hew/spack-build-3jlgb7q/version -I/vol0003/rccs-sdt/dat
a/a01008/tmpdir/spack-stage/spack-stage-bam-readcount-1.0.1-3jlgb7
q7iecrnx2w4zmmk6ql6wom5hew/spack-build-3jlgb7q/vendor/boost/includ
e -I/vol0003/rccs-sdt/data/a01008/tmpdir/spack-stage/spack-stage-b
am-readcount-1.0.1-3jlgb7q7iecrnx2w4zmmk6ql6wom5hew/spack-build-3j
lgb7q/vendor/samtools-1.10 -I/vol0003/rccs-sdt/data/a01008/tmpdir/
spack-stage/spack-stage-bam-readcount-1.0.1-3jlgb7q7iecrnx2w4zmmk6
ql6wom5hew/spack-build-3jlgb7q/vendor/samtools-1.10/htslib-1.10 -I
/data/rccs-sdt/a01008/tmpdir/spack-stage/spack-stage-bam-readcount
-1.0.1-3jlgb7q7iecrnx2w4zmmk6ql6wom5hew/spack-src/src/lib -Wall -s
td=c++0x -O3 -DNDEBUG -MD -MT build/src/lib/bamrc/CMakeFiles/bamrc
.dir/IndelQueueEntry.cpp.o -MF CMakeFiles/bamrc.dir/IndelQueueEntr
y.cpp.o.d -o CMakeFiles/bamrc.dir/IndelQueueEntry.cpp.o -c /data/r
ccs-sdt/a01008/tmpdir/spack-stage/spack-stage-bam-readcount-1.0.1-
3jlgb7q7iecrnx2w4zmmk6ql6wom5hew/spack-src/src/lib/bamrc/IndelQueu
eEntry.cpp
2275 [ 74%] Building CXX object build/src/lib/bamrc/CMakeFiles/bamrc.di
r/IndelQueue.cpp.o
2276 cd /vol0003/rccs-sdt/data/a01008/tmpdir/spack-stage/spack-stage-ba
m-readcount-1.0.1-3jlgb7q7iecrnx2w4zmmk6ql6wom5hew/spack-build-3jl
gb7q/build/src/lib/bamrc && /vol0003/rccs-sdt/data/a01008/spack-al
l-test/env-20240227/spack/lib/spack/env/fj/case-insensitive/FCC -
I/vol0003/rccs-sdt/data/a01008/tmpdir/spack-stage/spack-stage-bam-
readcount-1.0.1-3jlgb7q7iecrnx2w4zmmk6ql6wom5hew/spack-build-3jlgb
7q/vendor/src/gtest160/include -I/vol0003/rccs-sdt/data/a01008/tmp
dir/spack-stage/spack-stage-bam-readcount-1.0.1-3jlgb7q7iecrnx2w4z
mmk6ql6wom5hew/spack-build-3jlgb7q/version -I/vol0003/rccs-sdt/dat
a/a01008/tmpdir/spack-stage/spack-stage-bam-readcount-1.0.1-3jlgb7
q7iecrnx2w4zmmk6ql6wom5hew/spack-build-3jlgb7q/vendor/boost/includ
e -I/vol0003/rccs-sdt/data/a01008/tmpdir/spack-stage/spack-stage-b
am-readcount-1.0.1-3jlgb7q7iecrnx2w4zmmk6ql6wom5hew/spack-build-3j
lgb7q/vendor/samtools-1.10 -I/vol0003/rccs-sdt/data/a01008/tmpdir/
spack-stage/spack-stage-bam-readcount-1.0.1-3jlgb7q7iecrnx2w4zmmk6
ql6wom5hew/spack-build-3jlgb7q/vendor/samtools-1.10/htslib-1.10 -I
/data/rccs-sdt/a01008/tmpdir/spack-stage/spack-stage-bam-readcount
-1.0.1-3jlgb7q7iecrnx2w4zmmk6ql6wom5hew/spack-src/src/lib -Wall -s
td=c++0x -O3 -DNDEBUG -MD -MT build/src/lib/bamrc/CMakeFiles/bamrc
.dir/IndelQueue.cpp.o -MF CMakeFiles/bamrc.dir/IndelQueue.cpp.o.d
-o CMakeFiles/bamrc.dir/IndelQueue.cpp.o -c /data/rccs-sdt/a01008/
tmpdir/spack-stage/spack-stage-bam-readcount-1.0.1-3jlgb7q7iecrnx2
w4zmmk6ql6wom5hew/spack-src/src/lib/bamrc/IndelQueue.cpp
2277 In file included from /data/rccs-sdt/a01008/tmpdir/spack-stage/spa
ck-stage-bam-readcount-1.0.1-3jlgb7q7iecrnx2w4zmmk6ql6wom5hew/spac
k-src/src/lib/bamrc/BasicStat.cpp:1:
>> 2278 /data/rccs-sdt/a01008/tmpdir/spack-stage/spack-stage-bam-readcount
-1.0.1-3jlgb7q7iecrnx2w4zmmk6ql6wom5hew/spack-src/src/lib/bamrc/Ba
sicStat.hpp:5:10: fatal error: 'sam.h' file not found
2279 #include "sam.h"
2280 ^~~~~~~
2281 1 error generated.
>> 2282 make[2]: *** [build/src/lib/bamrc/CMakeFiles/bamrc.dir/build.make:
79: build/src/lib/bamrc/CMakeFiles/bamrc.dir/BasicStat.cpp.o] Erro
r 1
2283 make[2]: *** Waiting for unfinished jobs....
2284 In file included from /data/rccs-sdt/a01008/tmpdir/spack-stage/spa
ck-stage-bam-readcount-1.0.1-3jlgb7q7iecrnx2w4zmmk6ql6wom5hew/spac
k-src/src/lib/bamrc/IndelQueueEntry.cpp:1:
2285 In file included from /data/rccs-sdt/a01008/tmpdir/spack-stage/spa
ck-stage-bam-readcount-1.0.1-3jlgb7q7iecrnx2w4zmmk6ql6wom5hew/spac
k-src/src/lib/bamrc/IndelQueueEntry.hpp:3:
>> 2286 /data/rccs-sdt/a01008/tmpdir/spack-stage/spack-stage-bam-readcount
-1.0.1-3jlgb7q7iecrnx2w4zmmk6ql6wom5hew/spack-src/src/lib/bamrc/Ba
sicStat.hpp:5:10: fatal error: 'sam.h' file not found
2287 #include "sam.h"
2288 ^~~~~~~
2289 1 error generated.
2290 In file included from /data/rccs-sdt/a01008/tmpdir/spack-stage/spa
ck-stage-bam-readcount-1.0.1-3jlgb7q7iecrnx2w4zmmk6ql6wom5hew/spac
k-src/src/lib/bamrc/IndelQueue.cpp:1:
2291 In file included from /data/rccs-sdt/a01008/tmpdir/spack-stage/spa
ck-stage-bam-readcount-1.0.1-3jlgb7q7iecrnx2w4zmmk6ql6wom5hew/spac
k-src/src/lib/bamrc/IndelQueue.hpp:3:
>> 2292 /data/rccs-sdt/a01008/tmpdir/spack-stage/spack-stage-bam-readcount
-1.0.1-3jlgb7q7iecrnx2w4zmmk6ql6wom5hew/spack-src/src/lib/bamrc/Ba
sicStat.hpp:5:10: fatal error: 'sam.h' file not found
2293 #include "sam.h"
2294 ^~~~~~~
>> 2295 make[2]: *** [build/src/lib/bamrc/CMakeFiles/bamrc.dir/build.make:
93: build/src/lib/bamrc/CMakeFiles/bamrc.dir/IndelQueueEntry.cpp.o
] Error 1
2296 1 error generated.
>> 2297 make[2]: *** [build/src/lib/bamrc/CMakeFiles/bamrc.dir/build.make:
107: build/src/lib/bamrc/CMakeFiles/bamrc.dir/IndelQueue.cpp.o] Er
ror 1
2298 make[2]: Leaving directory '/vol0003/rccs-sdt/data/a01008/tmpdir/s
pack-stage/spack-stage-bam-readcount-1.0.1-3jlgb7q7iecrnx2w4zmmk6q
l6wom5hew/spack-build-3jlgb7q'
>> 2299 make[1]: *** [CMakeFiles/Makefile2:410: build/src/lib/bamrc/CMakeF
iles/bamrc.dir/all] Error 2
2300 make[1]: *** Waiting for unfinished jobs....
2301 int,const void *,size_t,int,ssize_t
2302 checking for sys/types.h... (cached) yes
2303 checking for sys/socket.h... (cached) yes
2304 checking for MSG_NOSIGNAL... yes
2305 checking for sys/types.h... (cached) yes
...
3099 /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/op
t/spack/linux-rhel8-a64fx/fj-4.10.0/cmake-3.27.7-ussgjuqkqbxi5dcv7
kbp6bugdcjc5ph6/bin/cmake -E make_directory /vol0003/rccs-sdt/data
/a01008/tmpdir/spack-stage/spack-stage-bam-readcount-1.0.1-3jlgb7q
7iecrnx2w4zmmk6ql6wom5hew/spack-build-3jlgb7q/CMakeFiles
3100 /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/op
t/spack/linux-rhel8-a64fx/fj-4.10.0/cmake-3.27.7-ussgjuqkqbxi5dcv7
kbp6bugdcjc5ph6/bin/cmake -E touch /vol0003/rccs-sdt/data/a01008/t
mpdir/spack-stage/spack-stage-bam-readcount-1.0.1-3jlgb7q7iecrnx2w
4zmmk6ql6wom5hew/spack-build-3jlgb7q/CMakeFiles/curl-complete
3101 /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/op
t/spack/linux-rhel8-a64fx/fj-4.10.0/cmake-3.27.7-ussgjuqkqbxi5dcv7
kbp6bugdcjc5ph6/bin/cmake -E touch /vol0003/rccs-sdt/data/a01008/t
mpdir/spack-stage/spack-stage-bam-readcount-1.0.1-3jlgb7q7iecrnx2w
4zmmk6ql6wom5hew/spack-build-3jlgb7q/vendor/src/curl-stamp/curl-do
ne
3102 make[2]: Leaving directory '/vol0003/rccs-sdt/data/a01008/tmpdir/s
pack-stage/spack-stage-bam-readcount-1.0.1-3jlgb7q7iecrnx2w4zmmk6q
l6wom5hew/spack-build-3jlgb7q'
3103 [ 78%] Built target curl
3104 make[1]: Leaving directory '/vol0003/rccs-sdt/data/a01008/tmpdir/s
pack-stage/spack-stage-bam-readcount-1.0.1-3jlgb7q7iecrnx2w4zmmk6q
l6wom5hew/spack-build-3jlgb7q'
>> 3105 make: *** [Makefile:169: all] Error 2
See build log for details:
/data/rccs-sdt/a01008/tmpdir/spack-stage/spack-stage-bam-readcount-1.0.1-3jlgb7q7iecrnx2w4zmmk6ql6wom5hew/spack-build-out.txt
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