List of Open Source Software which can be built on Fugaku

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Spack will be used to manage open source software packages on Fugaku. Fugaku users can easily use pre-installed packages and built packages based on Spack recipes. The following list shows the results of building/compiling packages for aarch64 according to the Spack recipes. Note that the results in this list do not guarantee that each package will work properly. On the other hand, Fujitsu will provide the following packages compiled with Fujitsu compiler on Fugaku as "external" packages, of which Spack can be aware.
  • OpenJDK 11
  • Ruby 2.6.5 or later
  • Python2 2.7.15
  • Python3 3.6.8
  • Numpy 1.14.3
  • SciPy 1.0.0
  • Eclipse IDE 2019-09 R Packages
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biobambam2 2.0.177

Compiler Fujitsu Compiler Fujitsu C/C++ Compiler 4.10.0 tcsds-1.2.38
Result Dependency Error

Failed Reason

Failed to install dependency package :
------------------------------------------------
==> Warning: config:terminal_title has been replaced by install_status and is ignored
==> Warning: Failed to initialize repository: '$spack/var/spack/repos/local'.
No repo.yaml found in '$spack/var/spack/repos/local'
To remove the bad repository, run this command:
spack repo rm $spack/var/spack/repos/local
[+] /usr (external autoconf-2.69-titfazaulrbnqxmahzxzof53lmsnabip)
[+] /usr (external automake-1.16.1-fryterkxezzfuo7itm4kijqfnazo5uk4)
[+] /usr (external gmake-4.2.1-eszqmok6vi6wxcmklx6bqloeidbh25kb)
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/gnuconfig-2022-09-17-w33oejhx46ex2iql4orzjqdmt2kdqdb2
[+] /usr (external libtool-2.4.6-c63win5txkc7eap5ppbbjjoaqyj5i6wx)
[+] /usr (external m4-1.4.18-craoyd3hmfdcanz7zxglna5yxcvdtoem)
==> Installing libmaus2-2.0.767-lria4pbrufnznae53tr3c5nbkqxdwilk [7/8]
==> No binary for libmaus2-2.0.767-lria4pbrufnznae53tr3c5nbkqxdwilk found: installing from source
==> Fetching https://spack-llnl-mirror.s3-us-west-2.amazonaws.com/_source-cache/archive/40/40cec9bef2fb61d8df0a35cdf76c59a1d8389686d393805138c364d0c029f03c.tar.gz
==> No patches needed for libmaus2
==> libmaus2: Executing phase: 'autoreconf'
==> libmaus2: Executing phase: 'configure'
==> libmaus2: Executing phase: 'build'
==> Error: ProcessError: Command exited with status 2:
'make' '-j16' 'V=1'

7 errors found in build log:
2418 checking host system type... aarch64-unknown-linux-gnu
2419 checking target system type... aarch64-unknown-linux-gnu
2420 checking how to print strings... printf
2421 checking for gcc... /vol0003/rccs-sdt/data/a01008/spack-all-test/e
nv-20240227/spack/lib/spack/env/fj/fcc
2422 checking whether the C compiler works... yes
2423 checking for C compiler default output file name... a.out
>> 2424 checking for suffix of executables... parallel-tests: error: requi
red file './test-driver' not found
2425 parallel-tests: 'automake --add-missing' can install 'test-drive
r'
>> 2426 make[3]: *** [Makefile:567: /data/rccs-sdt/a01008/tmpdir/spack-sta
ge/spack-stage-libmaus2-2.0.767-lria4pbrufnznae53tr3c5nbkqxdwilk/s
pack-src/Makefile.in] Error 1
2427 make[3]: *** Waiting for unfinished jobs....
2428
2429 checking whether we are cross compiling... no
2430 checking for suffix of object files... o
2431 checking whether we are using the GNU C compiler... yes
2432 checking whether /vol0003/rccs-sdt/data/a01008/spack-all-test/env-
20240227/spack/lib/spack/env/fj/fcc accepts -g... yes

...

2490 checking for a BSD-compatible install... /usr/bin/install -c
2491 checking whether build environment is sane... yes
2492 checking for a thread-safe mkdir -p... /usr/bin/mkdir -p
2493 checking whether make sets $(MAKE)... yes
2494 checking whether make supports the include directive... yes (GNU s
tyle)
2495 checking whether make supports nested variables... yes
>> 2496 configure: error: source directory already configured; run "make d
istclean" there first
>> 2497 make[3]: *** [Makefile:590: config.status] Error 1
2498 make[3]: Leaving directory '/vol0003/rccs-sdt/data/a01008/tmpdir/s
pack-stage/spack-stage-libmaus2-2.0.767-lria4pbrufnznae53tr3c5nbkq
xdwilk/spack-src'
>> 2499 make[2]: *** [Makefile:677: /data/rccs-sdt/a01008/tmpdir/spack-sta
ge/spack-stage-libmaus2-2.0.767-lria4pbrufnznae53tr3c5nbkqxdwilk/s
pack-src/aclocal.m4] Error 2
2500 make[2]: Leaving directory '/vol0003/rccs-sdt/data/a01008/tmpdir/s
pack-stage/spack-stage-libmaus2-2.0.767-lria4pbrufnznae53tr3c5nbkq
xdwilk/spack-src/test'
>> 2501 make[1]: *** [Makefile:677: all-recursive] Error 1
2502 make[1]: Leaving directory '/vol0003/rccs-sdt/data/a01008/tmpdir/s
pack-stage/spack-stage-libmaus2-2.0.767-lria4pbrufnznae53tr3c5nbkq
xdwilk/spack-src'
>> 2503 make: *** [Makefile:561: all] Error 2

See build log for details:
/data/rccs-sdt/a01008/tmpdir/spack-stage/spack-stage-libmaus2-2.0.767-lria4pbrufnznae53tr3c5nbkqxdwilk/spack-build-out.txt

==> Warning: Skipping build of biobambam2-2.0.177-layhllmacitnnnm3g3aw3zgf7rn4domi since libmaus2-2.0.767-lria4pbrufnznae53tr3c5nbkqxdwilk failed
==> Error: biobambam2-2.0.177-layhllmacitnnnm3g3aw3zgf7rn4domi: Package was not installed
==> Error: Installation request failed. Refer to reported errors for failing package(s).


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