List of Open Source Software which can be built on Fugaku

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Spack will be used to manage open source software packages on Fugaku. Fugaku users can easily use pre-installed packages and built packages based on Spack recipes. The following list shows the results of building/compiling packages for aarch64 according to the Spack recipes. Note that the results in this list do not guarantee that each package will work properly. On the other hand, Fujitsu will provide the following packages compiled with Fujitsu compiler on Fugaku as "external" packages, of which Spack can be aware.
  • OpenJDK 11
  • Ruby 2.6.5 or later
  • Python2 2.7.15
  • Python3 3.6.8
  • Numpy 1.14.3
  • SciPy 1.0.0
  • Eclipse IDE 2019-09 R Packages
Please contact us from email:

bioconductor-tximeta 1.18.1

Compiler Fujitsu Compiler Fujitsu C/C++ Compiler 4.10.0 tcsds-1.2.38
Result Dependency Error

Failed Reason

Failed to install dependency package :
------------------------------------------------
==> No patches needed for r-xml2
==> r-xml2: Executing phase: 'install'
==> r-xml2: Successfully installed r-xml2-1.3.3-eljdo6sczengbchdcsnwdyoriozbcbn3
Stage: 4.34s. Install: 38.93s. Post-install: 1.54s. Total: 46.17s
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/r-xml2-1.3.3-eljdo6sczengbchdcsnwdyoriozbcbn3
==> Installing r-plogr-0.2.0-gkwrudrwfagclbsfh46rtjv5vwvjbxpz [50/147]
==> No binary for r-plogr-0.2.0-gkwrudrwfagclbsfh46rtjv5vwvjbxpz found: installing from source
==> Fetching https://spack-llnl-mirror.s3-us-west-2.amazonaws.com/_source-cache/archive/0e/0e63ba2e1f624005fe25c67cdd403636a912e063d682eca07f2f1d65e9870d29.tar.gz
==> No patches needed for r-plogr
==> r-plogr: Executing phase: 'install'
==> r-plogr: Successfully installed r-plogr-0.2.0-gkwrudrwfagclbsfh46rtjv5vwvjbxpz
Stage: 1.85s. Install: 9.37s. Post-install: 1.46s. Total: 14.33s
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/r-plogr-0.2.0-gkwrudrwfagclbsfh46rtjv5vwvjbxpz
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/r-bitops-1.0-7-4sxphy6pdxok77wocgxbz6k3tksnkvpo
==> Installing r-matrixstats-0.63.0-si7zoaomb22lvi4tgf7qofeaapgsq75u [52/147]
==> No binary for r-matrixstats-0.63.0-si7zoaomb22lvi4tgf7qofeaapgsq75u found: installing from source
==> Fetching https://spack-llnl-mirror.s3-us-west-2.amazonaws.com/_source-cache/archive/c0/c000b60421742eb035ff4ceedd3e588a79e4b28985484f0c81361e5a6c351f5f.tar.gz
==> No patches needed for r-matrixstats
==> r-matrixstats: Executing phase: 'install'
==> r-matrixstats: Successfully installed r-matrixstats-0.63.0-si7zoaomb22lvi4tgf7qofeaapgsq75u
Stage: 8.65s. Install: 1m 4.91s. Post-install: 2.11s. Total: 1m 17.76s
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/r-matrixstats-0.63.0-si7zoaomb22lvi4tgf7qofeaapgsq75u
==> Installing r-rappdirs-0.3.3-5jedd4g3tqrv67bsiux6tih73iawwuv2 [53/147]
==> No binary for r-rappdirs-0.3.3-5jedd4g3tqrv67bsiux6tih73iawwuv2 found: installing from source
==> Fetching https://spack-llnl-mirror.s3-us-west-2.amazonaws.com/_source-cache/archive/49/49959f65b45b0b189a2792d6c1339bef59674ecae92f8c2ed9f26ff9e488c184.tar.gz
==> No patches needed for r-rappdirs
==> r-rappdirs: Executing phase: 'install'
==> r-rappdirs: Successfully installed r-rappdirs-0.3.3-5jedd4g3tqrv67bsiux6tih73iawwuv2
Stage: 1.94s. Install: 11.70s. Post-install: 1.40s. Total: 16.39s
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/r-rappdirs-0.3.3-5jedd4g3tqrv67bsiux6tih73iawwuv2
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/r-utf8-1.2.3-3viddmz7c7y2po47qh4aqxyfbi7jzdpx
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/r-fansi-1.0.4-i7snpixz7fv3bdxlyfdrvmevagjybpoo
==> Installing r-biocmanager-1.30.20-uci2ezc62doygskm5qzok7plpvupmxog [56/147]
==> No binary for r-biocmanager-1.30.20-uci2ezc62doygskm5qzok7plpvupmxog found: installing from source
==> Fetching https://spack-llnl-mirror.s3-us-west-2.amazonaws.com/_source-cache/archive/b9/b9e72d7687abbd785a69fecb530ec86ad92257a6be95b8e15953b193a516d5ea.tar.gz
==> No patches needed for r-biocmanager
==> r-biocmanager: Executing phase: 'install'
==> r-biocmanager: Successfully installed r-biocmanager-1.30.20-uci2ezc62doygskm5qzok7plpvupmxog
Stage: 2.56s. Install: 13.49s. Post-install: 1.39s. Total: 19.32s
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/r-biocmanager-1.30.20-uci2ezc62doygskm5qzok7plpvupmxog
==> Installing r-codetools-0.2-19-74dqahqcisidby2umiqfaodfpbirbhdd [57/147]
==> No binary for r-codetools-0.2-19-74dqahqcisidby2umiqfaodfpbirbhdd found: installing from source
==> Fetching https://spack-llnl-mirror.s3-us-west-2.amazonaws.com/_source-cache/archive/c4/c4b7e567c87f33dad85de92f79641e5e5b5deede6d19a9dfa47133d191782dab.tar.gz
==> No patches needed for r-codetools
==> r-codetools: Executing phase: 'install'
==> r-codetools: Successfully installed r-codetools-0.2-19-74dqahqcisidby2umiqfaodfpbirbhdd
Stage: 1.75s. Install: 11.95s. Post-install: 1.46s. Total: 16.54s
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/r-codetools-0.2-19-74dqahqcisidby2umiqfaodfpbirbhdd
==> Installing r-genomeinfodbdata-1.2.10-so5uhtuphhcsi26eazx3zpowaoir6umk [58/147]
==> No binary for r-genomeinfodbdata-1.2.10-so5uhtuphhcsi26eazx3zpowaoir6umk found: installing from source
==> Fetching https://spack-llnl-mirror.s3-us-west-2.amazonaws.com/_source-cache/archive/74/74c5db556d163e8f512d55f5c0d8ce315fb13ac822d31b4b030c20036d58f864.tar.gz
==> No patches needed for r-genomeinfodbdata
==> r-genomeinfodbdata: Executing phase: 'install'
==> r-genomeinfodbdata: Successfully installed r-genomeinfodbdata-1.2.10-so5uhtuphhcsi26eazx3zpowaoir6umk
Stage: 3.65s. Install: 7.89s. Post-install: 1.45s. Total: 14.32s
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/r-genomeinfodbdata-1.2.10-so5uhtuphhcsi26eazx3zpowaoir6umk
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/r-digest-0.6.31-hcawb2ylbccktqmb5o6l2rqyhn2edhtu
==> Installing r-sourcetools-0.1.7-1-vxvasdcgvwbxyeb66swrzbbnl6ah757i [60/147]
==> No binary for r-sourcetools-0.1.7-1-vxvasdcgvwbxyeb66swrzbbnl6ah757i found: installing from source
==> Fetching https://spack-llnl-mirror.s3-us-west-2.amazonaws.com/_source-cache/archive/96/96812bdb7a0dd99690d84e4b0a3def91389e4290f53f01919ef28a50554e31d1.tar.gz
==> No patches needed for r-sourcetools
==> r-sourcetools: Executing phase: 'install'
==> r-sourcetools: Successfully installed r-sourcetools-0.1.7-1-vxvasdcgvwbxyeb66swrzbbnl6ah757i
Stage: 2.73s. Install: 19.29s. Post-install: 1.76s. Total: 25.16s
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/r-sourcetools-0.1.7-1-vxvasdcgvwbxyeb66swrzbbnl6ah757i
==> Installing r-base64enc-0.1-3-6qsmtjccvgtzy3mmkpmvmkdkk6tmge6m [61/147]
==> No binary for r-base64enc-0.1-3-6qsmtjccvgtzy3mmkpmvmkdkk6tmge6m found: installing from source
==> Fetching https://spack-llnl-mirror.s3-us-west-2.amazonaws.com/_source-cache/archive/6d/6d856d8a364bcdc499a0bf38bfd283b7c743d08f0b288174fba7dbf0a04b688d.tar.gz
==> No patches needed for r-base64enc
==> r-base64enc: Executing phase: 'install'
==> r-base64enc: Successfully installed r-base64enc-0.1-3-6qsmtjccvgtzy3mmkpmvmkdkk6tmge6m
Stage: 1.69s. Install: 10.97s. Post-install: 1.41s. Total: 15.42s
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/r-base64enc-0.1-3-6qsmtjccvgtzy3mmkpmvmkdkk6tmge6m
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/r-lattice-0.21-8-spgumwxtqyecexni3jjwkpsrtak6nksb
==> Installing r-yaml-2.3.7-v3bpru65ewjfl4jwybetfdfenn2t4uni [63/147]
==> No binary for r-yaml-2.3.7-v3bpru65ewjfl4jwybetfdfenn2t4uni found: installing from source
==> Fetching https://spack-llnl-mirror.s3-us-west-2.amazonaws.com/_source-cache/archive/d2/d20cb219e0f9c48aba02f132f81cfa9ecda5e22c925e36726840218ed56680ab.tar.gz
==> No patches needed for r-yaml
==> r-yaml: Executing phase: 'install'
==> r-yaml: Successfully installed r-yaml-2.3.7-v3bpru65ewjfl4jwybetfdfenn2t4uni
Stage: 2.51s. Install: 25.19s. Post-install: 1.62s. Total: 30.53s
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/r-yaml-2.3.7-v3bpru65ewjfl4jwybetfdfenn2t4uni
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/r-evaluate-0.20-wknfhrvtsfp5p2wi536ewzrj2me6fq2o
==> Installing r-sys-3.4.1-5hmjlyxyuvsm6go4udarrialze4fdvlk [65/147]
==> No binary for r-sys-3.4.1-5hmjlyxyuvsm6go4udarrialze4fdvlk found: installing from source
==> Fetching https://spack-llnl-mirror.s3-us-west-2.amazonaws.com/_source-cache/archive/32/324e6d8fde58264e62bc04867b719c5fd16296de1542689801b8cb13621ecf52.tar.gz
==> No patches needed for r-sys
==> r-sys: Executing phase: 'install'
==> r-sys: Successfully installed r-sys-3.4.1-5hmjlyxyuvsm6go4udarrialze4fdvlk
Stage: 2.09s. Install: 11.25s. Post-install: 1.36s. Total: 15.93s
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/r-sys-3.4.1-5hmjlyxyuvsm6go4udarrialze4fdvlk
==> Installing r-bh-1.81.0-1-wcdouayimhmxvxfpezyiopop2idgipf6 [66/147]
==> No binary for r-bh-1.81.0-1-wcdouayimhmxvxfpezyiopop2idgipf6 found: installing from source
==> Fetching https://spack-llnl-mirror.s3-us-west-2.amazonaws.com/_source-cache/archive/f5/f51c8badd6f181e06353314e1d15a6ec1495cc498ee74b6fa4ea8aba6e97ff64.tar.gz
==> No patches needed for r-bh
==> r-bh: Executing phase: 'install'
==> r-bh: Successfully installed r-bh-1.81.0-1-wcdouayimhmxvxfpezyiopop2idgipf6
Stage: 4m 31.31s. Install: 10m 16.84s. Post-install: 4m 25.78s. Total: 19m 16.84s
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/r-bh-1.81.0-1-wcdouayimhmxvxfpezyiopop2idgipf6
==> Installing r-stringi-1.7.12-ecbs5luppljy676qohjkvx4yt5zls4kk [67/147]
==> No binary for r-stringi-1.7.12-ecbs5luppljy676qohjkvx4yt5zls4kk found: installing from source
==> Fetching https://spack-llnl-mirror.s3-us-west-2.amazonaws.com/_source-cache/archive/ef/efe8ac2900001f986a75db5641fbb24587a6d23de274a6a85c39dfa58921e009.tar.gz
==> No patches needed for r-stringi
==> r-stringi: Executing phase: 'install'
==> r-stringi: Successfully installed r-stringi-1.7.12-ecbs5luppljy676qohjkvx4yt5zls4kk
Stage: 39.18s. Install: 3m 14.64s. Post-install: 1.60s. Total: 3m 57.32s
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/r-stringi-1.7.12-ecbs5luppljy676qohjkvx4yt5zls4kk
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/r-r6-2.5.1-i5c5r2f4bm4u3iaq6ml4r7axwpdzciq7
==> Installing r-fastmap-1.1.1-ekrmpz5rvljchk3dvlsl5o4nv3galwiy [69/147]
==> No binary for r-fastmap-1.1.1-ekrmpz5rvljchk3dvlsl5o4nv3galwiy found: installing from source
==> Fetching https://spack-llnl-mirror.s3-us-west-2.amazonaws.com/_source-cache/archive/36/3623809dd016ae8abd235200ba7834effc4b916915a059deb76044137c5c7173.tar.gz
==> No patches needed for r-fastmap
==> r-fastmap: Executing phase: 'install'
==> r-fastmap: Successfully installed r-fastmap-1.1.1-ekrmpz5rvljchk3dvlsl5o4nv3galwiy
Stage: 2.07s. Install: 19.72s. Post-install: 1.33s. Total: 24.37s
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/r-fastmap-1.1.1-ekrmpz5rvljchk3dvlsl5o4nv3galwiy
==> Installing r-snow-0.4-4-3tki6ivmvtiowqs5lbhldbuhuuzqayjt [70/147]
==> No binary for r-snow-0.4-4-3tki6ivmvtiowqs5lbhldbuhuuzqayjt found: installing from source
==> Fetching https://spack-llnl-mirror.s3-us-west-2.amazonaws.com/_source-cache/archive/84/84587f46f222a96f3e2fde10ad6ec6ddbd878f4e917cd926d632f61a87db13c9.tar.gz
==> No patches needed for r-snow
==> r-snow: Executing phase: 'install'
==> r-snow: Successfully installed r-snow-0.4-4-3tki6ivmvtiowqs5lbhldbuhuuzqayjt
Stage: 1.87s. Install: 11.46s. Post-install: 1.39s. Total: 16.05s
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/r-snow-0.4-4-3tki6ivmvtiowqs5lbhldbuhuuzqayjt
==> Installing r-lazyeval-0.2.2-rmpyxyxlp6hwqrjerrgtf3od2mhtyis2 [71/147]
==> No binary for r-lazyeval-0.2.2-rmpyxyxlp6hwqrjerrgtf3od2mhtyis2 found: installing from source
==> Fetching https://spack-llnl-mirror.s3-us-west-2.amazonaws.com/_source-cache/archive/d6/d6904112a21056222cfcd5eb8175a78aa063afe648a562d9c42c6b960a8820d4.tar.gz
==> No patches needed for r-lazyeval
==> r-lazyeval: Executing phase: 'install'
==> r-lazyeval: Successfully installed r-lazyeval-0.2.2-rmpyxyxlp6hwqrjerrgtf3od2mhtyis2
Stage: 3.20s. Install: 18.35s. Post-install: 1.42s. Total: 24.37s
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/r-lazyeval-0.2.2-rmpyxyxlp6hwqrjerrgtf3od2mhtyis2
==> Installing r-rcpp-1.0.10-nj6vezeniwcuaqcoiblry5qqrer5qizv [72/147]
==> No binary for r-rcpp-1.0.10-nj6vezeniwcuaqcoiblry5qqrer5qizv found: installing from source
==> Fetching https://spack-llnl-mirror.s3-us-west-2.amazonaws.com/_source-cache/archive/1e/1e65e24a9981251ab5fc4f9fd65fe4eab4ba0255be3400a8c5abe20b62b5d546.tar.gz
==> No patches needed for r-rcpp
==> r-rcpp: Executing phase: 'install'
==> r-rcpp: Successfully installed r-rcpp-1.0.10-nj6vezeniwcuaqcoiblry5qqrer5qizv
Stage: 17.69s. Install: 1m 44.90s. Post-install: 9.21s. Total: 2m 13.19s
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/r-rcpp-1.0.10-nj6vezeniwcuaqcoiblry5qqrer5qizv
==> Installing r-bit64-4.0.5-s5vg7hwj6zgcd5xkhz4wj4enovkyzuqp [73/147]
==> No binary for r-bit64-4.0.5-s5vg7hwj6zgcd5xkhz4wj4enovkyzuqp found: installing from source
==> Fetching https://spack-llnl-mirror.s3-us-west-2.amazonaws.com/_source-cache/archive/25/25df6826ea5e93241c4874cad4fa8dadc87a40f4ff74c9107aa12a9e033e1578.tar.gz
==> No patches needed for r-bit64
==> r-bit64: Executing phase: 'install'
==> r-bit64: Successfully installed r-bit64-4.0.5-s5vg7hwj6zgcd5xkhz4wj4enovkyzuqp
Stage: 2.79s. Install: 42.13s. Post-install: 1.60s. Total: 47.97s
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/r-bit64-4.0.5-s5vg7hwj6zgcd5xkhz4wj4enovkyzuqp
==> Error: error parsing database:
[Errno 2] No such file or directory: '/vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/.spack-db/index.json'


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