Failed Reason

Failed to install dependency package :
------------------------------------------------
65 from /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spac
k/opt/spack/linux-rhel8-a64fx/fj-4.10.0/ruby-2.7.2-l37xxfjn33kdtyxe2
l2bznpzsywvzqf7/lib/ruby/2.7.0/mkmf.rb:1731:in `create_header'
66 from extconf.rb:96:in `<main>'
67
68 To see why this extension failed to compile, please check the mkmf.l
og which can be found here:
69

See build log for details:
/data/rccs-sdt/a01008/tmpdir/spack-stage/spack-stage-ruby-narray-0.9.1.8-d62p47xldwxtrpd24qet2qzzo3diijh2/spack-build-out.txt

==> Installing ruby-unicode-display-width-1.7.0-rqvamm5qcpwvm7lgtuure5spxhexibrm [115/145]
==> No binary for ruby-unicode-display-width-1.7.0-rqvamm5qcpwvm7lgtuure5spxhexibrm found: installing from source
==> Fetching https://spack-llnl-mirror.s3-us-west-2.amazonaws.com/_source-cache/archive/2d/2dd6faa95e022a9f52841d29be6c622c58fff9fb0b84fb2cb30d4f0e13fa8a73.tar.gz
==> No patches needed for ruby-unicode-display-width
==> ruby-unicode-display-width: Executing phase: 'build'
==> ruby-unicode-display-width: Executing phase: 'install'
==> ruby-unicode-display-width: Successfully installed ruby-unicode-display-width-1.7.0-rqvamm5qcpwvm7lgtuure5spxhexibrm
Stage: 1.64s. Build: 1.96s. Install: 1m 0.35s. Post-install: 1.26s. Total: 1m 6.19s
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/ruby-unicode-display-width-1.7.0-rqvamm5qcpwvm7lgtuure5spxhexibrm
==> Installing ruby-zentest-4.12.0-4cyb7uyaef4fybhr6bro7ynylrgwjfto [116/145]
==> No binary for ruby-zentest-4.12.0-4cyb7uyaef4fybhr6bro7ynylrgwjfto found: installing from source
==> Fetching https://spack-llnl-mirror.s3-us-west-2.amazonaws.com/_source-cache/archive/53/5301757c3ab29dd2222795c1b076dd348f4d92fe0426e97a13ae56fea47a786e
==> No patches needed for ruby-zentest
==> ruby-zentest: Executing phase: 'build'
==> ruby-zentest: Executing phase: 'install'
==> ruby-zentest: Successfully installed ruby-zentest-4.12.0-4cyb7uyaef4fybhr6bro7ynylrgwjfto
Stage: 1.30s. Build: 0.01s. Install: 59.22s. Post-install: 2.01s. Total: 1m 3.49s
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/ruby-zentest-4.12.0-4cyb7uyaef4fybhr6bro7ynylrgwjfto
==> Installing perl-carp-clan-6.06-lx3ozmk57pq3wocn6ytsfy5pyimgzjhk [117/145]
==> No binary for perl-carp-clan-6.06-lx3ozmk57pq3wocn6ytsfy5pyimgzjhk found: installing from source
==> Fetching https://spack-llnl-mirror.s3-us-west-2.amazonaws.com/_source-cache/archive/ea/ea4ac8f611354756d43cb369880032901e9cc4cc7e0bebb7b647186dac00c9d4.tar.gz
==> No patches needed for perl-carp-clan
==> perl-carp-clan: Executing phase: 'configure'
==> perl-carp-clan: Executing phase: 'build'
==> perl-carp-clan: Executing phase: 'install'
==> perl-carp-clan: Successfully installed perl-carp-clan-6.06-lx3ozmk57pq3wocn6ytsfy5pyimgzjhk
Stage: 1.86s. Configure: 1.24s. Build: 1.71s. Install: 0.80s. Post-install: 0.97s. Total: 7.41s
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/perl-carp-clan-6.06-lx3ozmk57pq3wocn6ytsfy5pyimgzjhk
==> Installing perl-pegex-0.75-f5gpufe3xd6wg7me7begkpitraisyvpl [118/145]
==> No binary for perl-pegex-0.75-f5gpufe3xd6wg7me7begkpitraisyvpl found: installing from source
==> Fetching https://spack-llnl-mirror.s3-us-west-2.amazonaws.com/_source-cache/archive/4d/4dc8d335de80b25247cdb3f946f0d10d9ba0b3c34b0ed7d00316fd068fd05edc.tar.gz
==> No patches needed for perl-pegex
==> perl-pegex: Executing phase: 'configure'
==> perl-pegex: Executing phase: 'build'
==> perl-pegex: Executing phase: 'install'
==> perl-pegex: Successfully installed perl-pegex-0.75-f5gpufe3xd6wg7me7begkpitraisyvpl
Stage: 4.63s. Configure: 1.35s. Build: 3.93s. Install: 3.18s. Post-install: 1.59s. Total: 15.68s
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/perl-pegex-0.75-f5gpufe3xd6wg7me7begkpitraisyvpl
==> Warning: glib-2.78.0-74p33i3rlx64dojcar5xzu3de6xzra6v failed to install
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/perl-http-cookies-6.10-t44dmyna5fj2svulgamjflz2d6qs5owy
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/perl-http-negotiate-6.01-neuqbcgjbwrf6gnyiz4wwjzvmgays3ak
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/perl-http-daemon-6.01-a2itgdc6kkxdutbyk2chjsslyp5vaqc4
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/libxpm-3.5.12-vc4ena325wn2zvugm26gbumskbwvyq2e
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/libgd-2.3.3-is5hfx5ltgpbnqlcji3j46mjw4lnuibm
==> Installing mysql-8.0.29-u5ah7xoxf327yrkuw3r7xutyggwq5j6z [125/145]
==> No binary for mysql-8.0.29-u5ah7xoxf327yrkuw3r7xutyggwq5j6z found: installing from source
==> Fetching https://spack-llnl-mirror.s3-us-west-2.amazonaws.com/_source-cache/archive/51/512170fa6f78a694d6f18d197e999d2716ee68dc541d7644dd922a3663407266.tar.gz
==> No patches needed for mysql
==> mysql: Executing phase: 'cmake'
==> Error: ProcessError: Command exited with status 1:
'/vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/cmake-3.27.7-ussgjuqkqbxi5dcv7kbp6bugdcjc5ph6/bin/cmake' '-G' 'Unix Makefiles' '-DCMAKE_INSTALL_PREFIX:STRING=/vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/mysql-8.0.29-u5ah7xoxf327yrkuw3r7xutyggwq5j6z' '-DCMAKE_BUILD_TYPE:STRING=Release' '-DCMAKE_INTERPROCEDURAL_OPTIMIZATION:BOOL=OFF' '-DCMAKE_VERBOSE_MAKEFILE:BOOL=ON' '-DCMAKE_INSTALL_RPATH_USE_LINK_PATH:BOOL=ON' '-DCMAKE_INSTALL_RPATH:STRING=/vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/mysql-8.0.29-u5ah7xoxf327yrkuw3r7xutyggwq5j6z/lib;/vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/mysql-8.0.29-u5ah7xoxf327yrkuw3r7xutyggwq5j6z/lib64;/vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/boost-1.77.0-te4k6nvulb3nyj643pfxcuqz2dfocyjk/lib;/vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/zlib-ng-2.1.4-m4nsqgrityww4eqljits3svzi4wynus3/lib;/vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/zstd-1.5.5-o7dcxyae4kjgruht44yuloa27ddisxfe/lib' '-DCMAKE_PREFIX_PATH:STRING=/vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/rpcsvc-proto-1.4.3-fhadmt3mj5rritf7o5fwwwmu4eemetoe;/vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/doxygen-1.9.6-gfyvxy6rdccyi4ldjsc2po4g6hucdfcg;/vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/cmake-3.27.7-ussgjuqkqbxi5dcv7kbp6bugdcjc5ph6;/vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/boost-1.77.0-te4k6nvulb3nyj643pfxcuqz2dfocyjk;/vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/zstd-1.5.5-o7dcxyae4kjgruht44yuloa27ddisxfe;/vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/zlib-ng-2.1.4-m4nsqgrityww4eqljits3svzi4wynus3;/vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/bison-3.8.2-kviw7pt3aorzqonkoy2vxqd5nzod5xdv' '-DBOOST_ROOT=/vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/boost-1.77.0-te4k6nvulb3nyj643pfxcuqz2dfocyjk' '-DWITH_EDITLINE=system' '-Dlibedit_INCLUDE_DIR=/usr/include' '-Dlibedit_LIBRARY=/usr/lib64' '/data/rccs-sdt/a01008/tmpdir/spack-stage/spack-stage-mysql-8.0.29-u5ah7xoxf327yrkuw3r7xutyggwq5j6z/spack-src'

1 error found in build log:
45 -- BOOST_INCLUDE_DIR
46 -- LOCAL_BOOST_DIR LOCAL_BOOST_DIR-NOTFOUND
47 -- LOCAL_BOOST_ZIP LOCAL_BOOST_ZIP-NOTFOUND
48 -- Could not find (the correct version of) boost.
49 -- MySQL currently requires boost_1_77_0
50
>> 51 CMake Error at cmake/boost.cmake:108 (MESSAGE):
52 You can download it with -DDOWNLOAD_BOOST=1 -DWITH_BOOST=<director
y>
53
54 This CMake script will look for boost in <directory>. If it is no
t there,
55 it will download and unpack it (in that directory) for you.
56
57 You can also download boost manually, from

See build log for details:
/data/rccs-sdt/a01008/tmpdir/spack-stage/spack-stage-mysql-8.0.29-u5ah7xoxf327yrkuw3r7xutyggwq5j6z/spack-build-out.txt

==> Warning: Skipping build of perl-dbd-mysql-4.050-q3c2jzlj6ng27xxu6wstr45coyq3ylzb since mysql-8.0.29-u5ah7xoxf327yrkuw3r7xutyggwq5j6z failed
==> Warning: Skipping build of blat-37-v7ujipczyjc7ewx4whj7bsszmnhp2f6w since mysql-8.0.29-u5ah7xoxf327yrkuw3r7xutyggwq5j6z failed
==> Installing ruby-terminal-table-1.8.0-pzmo5sffyflqlo6xgqprctjgmpj4lf2y [126/145]
==> No binary for ruby-terminal-table-1.8.0-pzmo5sffyflqlo6xgqprctjgmpj4lf2y found: installing from source
==> Fetching https://spack-llnl-mirror.s3-us-west-2.amazonaws.com/_source-cache/archive/69/69b8e157f5dc3f056b5242923ab3e729a16c6f893b3a5d540e71135a973e5fbe.tar.gz
==> No patches needed for ruby-terminal-table
==> ruby-terminal-table: Executing phase: 'build'
==> ruby-terminal-table: Executing phase: 'install'
==> ruby-terminal-table: Successfully installed ruby-terminal-table-1.8.0-pzmo5sffyflqlo6xgqprctjgmpj4lf2y
Stage: 1.89s. Build: 5.80s. Install: 1m 11.60s. Post-install: 1.10s. Total: 1m 21.56s
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/ruby-terminal-table-1.8.0-pzmo5sffyflqlo6xgqprctjgmpj4lf2y
==> Installing ruby-rubyinline-3.12.5-q6gf66osrob2dxadwssjb4j3sz5zcyiw [127/145]
==> No binary for ruby-rubyinline-3.12.5-q6gf66osrob2dxadwssjb4j3sz5zcyiw found: installing from source
==> Fetching https://spack-llnl-mirror.s3-us-west-2.amazonaws.com/_source-cache/archive/d4/d4559cb86b7fedd2e9b4b0a3bd99a1955186dbc09f1269920a0dd5c67639c156
==> No patches needed for ruby-rubyinline
==> ruby-rubyinline: Executing phase: 'build'
==> ruby-rubyinline: Executing phase: 'install'
==> ruby-rubyinline: Successfully installed ruby-rubyinline-3.12.5-q6gf66osrob2dxadwssjb4j3sz5zcyiw
Stage: 1.28s. Build: 0.01s. Install: 1m 1.21s. Post-install: 1.58s. Total: 1m 5.06s
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/ruby-rubyinline-3.12.5-q6gf66osrob2dxadwssjb4j3sz5zcyiw
==> Installing perl-bit-vector-7.4-gj36nm4l4gv3sl7zfcfd3pqkrzx74yjo [128/145]
==> No binary for perl-bit-vector-7.4-gj36nm4l4gv3sl7zfcfd3pqkrzx74yjo found: installing from source
==> Fetching https://spack-llnl-mirror.s3-us-west-2.amazonaws.com/_source-cache/archive/3c/3c6daa671fecfbc35f92a9385b563d65f50dfc6bdc8b4805f9ef46c0d035a926.tar.gz
==> No patches needed for perl-bit-vector
==> perl-bit-vector: Executing phase: 'configure'
==> perl-bit-vector: Executing phase: 'build'
==> perl-bit-vector: Executing phase: 'install'
==> perl-bit-vector: Successfully installed perl-bit-vector-7.4-gj36nm4l4gv3sl7zfcfd3pqkrzx74yjo
Stage: 2.59s. Configure: 1.24s. Build: 22.17s. Install: 1.11s. Post-install: 1.02s. Total: 29.01s
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/perl-bit-vector-7.4-gj36nm4l4gv3sl7zfcfd3pqkrzx74yjo
==> Installing perl-inline-c-0.81-wh2lmf37aaqgvxmpcpk7ym6qfrxwmhhc [129/145]
==> No binary for perl-inline-c-0.81-wh2lmf37aaqgvxmpcpk7ym6qfrxwmhhc found: installing from source
==> Fetching https://spack-llnl-mirror.s3-us-west-2.amazonaws.com/_source-cache/archive/f1/f185258d9050d7f79b4f00f12625cc469c2f700ff62d3e831cb18d80d2c87aac.tar.gz
==> No patches needed for perl-inline-c
==> perl-inline-c: Executing phase: 'configure'
==> perl-inline-c: Executing phase: 'build'
==> perl-inline-c: Executing phase: 'install'
==> perl-inline-c: Successfully installed perl-inline-c-0.81-wh2lmf37aaqgvxmpcpk7ym6qfrxwmhhc
Stage: 3.47s. Configure: 1.58s. Build: 2.17s. Install: 1.52s. Post-install: 1.34s. Total: 11.68s
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/perl-inline-c-0.81-wh2lmf37aaqgvxmpcpk7ym6qfrxwmhhc
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/perl-libwww-perl-6.68-uqujrm7oqi72of46ny3uoo2d2q2fjhoz
==> Installing perl-xml-parser-2.46-sjyrtkfqpqhb6cuvvnejkjr25eajdoo4 [131/145]
==> No binary for perl-xml-parser-2.46-sjyrtkfqpqhb6cuvvnejkjr25eajdoo4 found: installing from source
==> Using cached archive: /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/var/spack/cache/_source-cache/archive/d3/d331332491c51cccfb4cb94ffc44f9cd73378e618498d4a37df9e043661c515d.tar.gz
==> No patches needed for perl-xml-parser
==> perl-xml-parser: Executing phase: 'configure'
==> perl-xml-parser: Executing phase: 'build'
==> Error: ProcessError: Command exited with status 2:
'make' '-j16'

1 error found in build log:
23 Note that if you build against a shareable library in a non-standard
location
24 you may (on some platforms) also have to set your LD_LIBRARY_PATH en
vironment
25 variable at run time for perl to find the library.
26
27 ==> perl-xml-parser: Executing phase: 'build'
28 ==> [2024-03-10-23:14:49.434221] 'make' '-j16'
>> 29 make: *** No targets specified and no makefile found. Stop.

See build log for details:
/data/rccs-sdt/a01008/tmpdir/spack-stage/spack-stage-perl-xml-parser-2.46-sjyrtkfqpqhb6cuvvnejkjr25eajdoo4/spack-build-out.txt

==> Error: biopieces-2016-04-12-qj4sn2vyyc4wo3flus7l6nat6niqiff3: Package was not installed
==> Error: Installation request failed. Refer to reported errors for failing package(s).