List of Open Source Software which can be built on Fugaku
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Spack will be used to manage open source software packages on Fugaku.
Fugaku users can easily use pre-installed packages and built packages based on Spack recipes.
The following list shows the results of building/compiling packages for aarch64 according to the Spack recipes.
Note that the results in this list do not guarantee that each package will work properly.
On the other hand, Fujitsu will provide the following packages compiled with Fujitsu compiler on Fugaku as "external" packages, of which Spack can be aware.
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bpp-popgen 2.4.1
| Compiler | Fujitsu Compiler Fujitsu C/C++ Compiler 4.10.0 tcsds-1.2.38 |
|---|---|
| Result | Dependency Error |
Failed Reason
Failed to install dependency package :
------------------------------------------------
==> Warning: config:terminal_title has been replaced by install_status and is ignored
==> Warning: Failed to initialize repository: '$spack/var/spack/repos/local'.
No repo.yaml found in '$spack/var/spack/repos/local'
To remove the bad repository, run this command:
spack repo rm $spack/var/spack/repos/local
[+] /usr (external curl-7.61.1-qsvgylcys5hkzdnl2pdh4blrprxlsp5m)
[+] /usr (external ncurses-6.1-a6lc7oq2dlgphtibbpp6x72mqgmscros)
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/zlib-ng-2.1.4-m4nsqgrityww4eqljits3svzi4wynus3
[+] /usr (external gmake-4.2.1-eszqmok6vi6wxcmklx6bqloeidbh25kb)
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/cmake-3.27.7-ussgjuqkqbxi5dcv7kbp6bugdcjc5ph6
==> Installing bpp-core-2.4.1-mstvbptez73mhkqd4wessee3eh4ykkyn [6/8]
==> No binary for bpp-core-2.4.1-mstvbptez73mhkqd4wessee3eh4ykkyn found: installing from source
Reversed (or previously applied) patch detected! Assume -R? [n]
Apply anyway? [n]
3 out of 3 hunks ignored -- saving rejects to file src/Bpp/Numeric/Function/ThreePointsNumericalDerivative.cpp.rej
Reversed (or previously applied) patch detected! Assume -R? [n]
Apply anyway? [n]
1 out of 1 hunk ignored -- saving rejects to file src/Bpp/Numeric/Hmm/RescaledHmmLikelihood.cpp.rej
==> Using cached archive: /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/var/spack/cache/_source-cache/archive/11/1150b8ced22cff23dd4770d7c23fad11239070b44007740e77407f0d746c0af6.tar.gz
==> Patch /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/var/spack/repos/builtin/packages/bpp-core/clarify_isnan.patch failed.
==> Error: ProcessError: Command exited with status 1:
'/usr/bin/patch' '-s' '-p' '1' '-i' '/vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/var/spack/repos/builtin/packages/bpp-core/clarify_isnan.patch' '-d' '.'
==> Warning: Skipping build of bpp-seq-2.4.1-zeyanrtkxuk6qwtv6tnezamafvrztwzz since bpp-core-2.4.1-mstvbptez73mhkqd4wessee3eh4ykkyn failed
==> Warning: Skipping build of bpp-popgen-2.4.1-tbtcl2cqgrphtboefl4johetthck5j3z since bpp-seq-2.4.1-zeyanrtkxuk6qwtv6tnezamafvrztwzz failed
==> Error: bpp-popgen-2.4.1-tbtcl2cqgrphtboefl4johetthck5j3z: Package was not installed
==> Error: Installation request failed. Refer to reported errors for failing package(s).
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