List of Open Source Software which can be built on Fugaku

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Spack will be used to manage open source software packages on Fugaku. Fugaku users can easily use pre-installed packages and built packages based on Spack recipes. The following list shows the results of building/compiling packages for aarch64 according to the Spack recipes. Note that the results in this list do not guarantee that each package will work properly. On the other hand, Fujitsu will provide the following packages compiled with Fujitsu compiler on Fugaku as "external" packages, of which Spack can be aware.
  • OpenJDK 11
  • Ruby 2.6.5 or later
  • Python2 2.7.15
  • Python3 3.6.8
  • Numpy 1.14.3
  • SciPy 1.0.0
  • Eclipse IDE 2019-09 R Packages
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bracken 2.8

Compiler Fujitsu Compiler Fujitsu C/C++ Compiler 4.10.0 tcsds-1.2.38
Result Dependency Error

Failed Reason

Failed to install dependency package :
------------------------------------------------
==> Warning: config:terminal_title has been replaced by install_status and is ignored
==> Warning: Failed to initialize repository: '$spack/var/spack/repos/local'.
No repo.yaml found in '$spack/var/spack/repos/local'
To remove the bad repository, run this command:
spack repo rm $spack/var/spack/repos/local
[+] /usr (external perl-5.26.3-rkgbbov2pluaat3kknhtag5ui3vltkqk)
[+] /usr (external popt-1.18-ojgizmyrlxs7e6lski3lntrfttrkz7qi)
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/zlib-ng-2.1.4-m4nsqgrityww4eqljits3svzi4wynus3
[+] /usr (external gettext-0.19.8.1-6jl23wn6jpwquhvqibpwhvia7vxsgrq3)
[+] /usr (external gmake-4.2.1-eszqmok6vi6wxcmklx6bqloeidbh25kb)
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/gnuconfig-2022-09-17-w33oejhx46ex2iql4orzjqdmt2kdqdb2
[+] /usr (external gnutls-3.6.16-zd75auy6lg2wyteuizlxhp6mt6d6jykt)
[+] /usr (external pkgconf-1.4.2-mmjuloqcob6vnd6bylwgum67waaa3kht)
[+] /vol0004/apps/oss/spack-v0.19/opt/spack/linux-rhel8-a64fx/fj-4.8.1/python-3.10.8-7q66snjvhvy7im57hncbgpirmddrb5sk (external python-3.10.8-zcbuy6dnhwhmsrco46b6ayaywy4nrfcy)
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/libiconv-1.17-nh4rfr3f3pcowrx2xcn2l45yyfy3xzk6
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/rsync-3.1.3-2gmgyo5wa7ts5ttuaawxpw7dgzrnlyoc
==> Installing wget-1.21.3-5k7gdbbo5fvggqwyhzxznyhfppo2xogl [12/14]
==> No binary for wget-1.21.3-5k7gdbbo5fvggqwyhzxznyhfppo2xogl found: installing from source
==> Fetching https://spack-llnl-mirror.s3-us-west-2.amazonaws.com/_source-cache/archive/57/5726bb8bc5ca0f6dc7110f6416e4bb7019e2d2ff5bf93d1ca2ffcc6656f220e5.tar.gz
==> Applied patch /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/var/spack/repos/builtin/packages/wget/gnulib.patch
==> wget: Executing phase: 'autoreconf'
==> wget: Executing phase: 'configure'
==> wget: Executing phase: 'build'
==> Error: ProcessError: Command exited with status 2:
'make' '-j16' 'V=1'

2 errors found in build log:
705 ==> wget: Executing phase: 'build'
706 ==> [2024-03-10-21:49:09.485733] 'make' '-j16' 'V=1'
707 CDPATH="${ZSH_VERSION+.}:" && cd /data/rccs-sdt/a01008/tmpdir/spack
-stage/spack-stage-wget-1.21.3-5k7gdbbo5fvggqwyhzxznyhfppo2xogl/spa
ck-src && /bin/sh '/data/rccs-sdt/a01008/tmpdir/spack-stage/spack-s
tage-wget-1.21.3-5k7gdbbo5fvggqwyhzxznyhfppo2xogl/spack-src/build-a
ux/missing' aclocal-1.16 -I m4
708 configure.ac:938: warning: macro 'AM_PATH_GPGME' not found in libra
ry
709 CDPATH="${ZSH_VERSION+.}:" && cd /data/rccs-sdt/a01008/tmpdir/spack
-stage/spack-stage-wget-1.21.3-5k7gdbbo5fvggqwyhzxznyhfppo2xogl/spa
ck-src && /bin/sh '/data/rccs-sdt/a01008/tmpdir/spack-stage/spack-s
tage-wget-1.21.3-5k7gdbbo5fvggqwyhzxznyhfppo2xogl/spack-src/build-a
ux/missing' autoconf
710 cd /data/rccs-sdt/a01008/tmpdir/spack-stage/spack-stage-wget-1.21.
3-5k7gdbbo5fvggqwyhzxznyhfppo2xogl/spack-src && /bin/sh /data/rccs-
sdt/a01008/tmpdir/spack-stage/spack-stage-wget-1.21.3-5k7gdbbo5fvgg
qwyhzxznyhfppo2xogl/spack-src/build-aux/missing automake-1.16 --gnu
>> 711 configure.ac:33: error: possibly undefined macro: AX_CODE_COVERAGE
712 If this token and others are legitimate, please use m4_patter
n_allow.
713 See the Autoconf documentation.
>> 714 make: *** [Makefile:1738: /data/rccs-sdt/a01008/tmpdir/spack-stage/
spack-stage-wget-1.21.3-5k7gdbbo5fvggqwyhzxznyhfppo2xogl/spack-src/
configure] Error 1
715 make: *** Waiting for unfinished jobs....

See build log for details:
/data/rccs-sdt/a01008/tmpdir/spack-stage/spack-stage-wget-1.21.3-5k7gdbbo5fvggqwyhzxznyhfppo2xogl/spack-build-out.txt

==> Warning: Skipping build of kraken2-2.1.2-qj4ysj24ywgmv4y7ffjuj34fgweqbjph since wget-1.21.3-5k7gdbbo5fvggqwyhzxznyhfppo2xogl failed
==> Warning: Skipping build of bracken-2.8-ceqtvnlacx5htw4iwwczzbccy4f6hlnu since kraken2-2.1.2-qj4ysj24ywgmv4y7ffjuj34fgweqbjph failed
==> Error: bracken-2.8-ceqtvnlacx5htw4iwwczzbccy4f6hlnu: Package was not installed
==> Error: Installation request failed. Refer to reported errors for failing package(s).


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