List of Open Source Software which can be built on Fugaku

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Spack will be used to manage open source software packages on Fugaku. Fugaku users can easily use pre-installed packages and built packages based on Spack recipes. The following list shows the results of building/compiling packages for aarch64 according to the Spack recipes. Note that the results in this list do not guarantee that each package will work properly. On the other hand, Fujitsu will provide the following packages compiled with Fujitsu compiler on Fugaku as "external" packages, of which Spack can be aware.
  • OpenJDK 11
  • Ruby 2.6.5 or later
  • Python2 2.7.15
  • Python3 3.6.8
  • Numpy 1.14.3
  • SciPy 1.0.0
  • Eclipse IDE 2019-09 R Packages
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candle-benchmarks 0.1

Compiler Fujitsu Compiler Fujitsu C/C++ Compiler 4.10.0 tcsds-1.2.38
Result Dependency Error

Failed Reason

Failed to install dependency package :
------------------------------------------------
'/vol0004/apps/oss/spack-v0.19/opt/spack/linux-rhel8-a64fx/fj-4.8.1/python-3.10.8-7q66snjvhvy7im57hncbgpirmddrb5sk/bin/python3.10' '-m' 'pip' '-vvv' '--no-input' '--no-cache-dir' '--disable-pip-version-check' 'install' '--no-deps' '--ignore-installed' '--no-build-isolation' '--no-warn-script-location' '--no-index' '--prefix=/vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/py-numpy-1.26.1-lfjg3fewnwt3u4cqwndtt7mluq3bz7yw' '--config-settings=builddir=build' '--config-settings=compile-args=-j16' '--config-settings=setup-args=-Dblas=fjlapackexsve' '--config-settings=setup-args=-Dlapack=fjlapackexsve' '.'

2 errors found in build log:
64
65 Library m found: YES
66 Found CMake: /usr/bin/cmake (3.20.2)
67 WARNING: CMake Toolchain: Failed to determine CMake compilers stat
e
68 Run-time dependency fjlapackexsve found: NO (tried pkgconfig and c
make)
69
>> 70 ../numpy/meson.build:169:4: ERROR: Problem encountered: No BLAS libr
ary detected! Install one, or use the `allow-noblas` build option (n
ote, this may be up to 100x slower for some linear algebra operation
s).
71
72 A full log can be found at /vol0003/rccs-sdt/data/a01008/tmpdir/sp
ack-stage/spack-stage-py-numpy-1.26.1-lfjg3fewnwt3u4cqwndtt7mluq3bz7
yw/spack-src/build/meson-logs/meson-log.txt
73 error: subprocess-exited-with-error
74
75 × Preparing metadata (pyproject.toml) did not run successfully.
76 │ exit code: 1
77 ╰─> See above for output.
78
79 note: This error originates from a subprocess, and is likely not a
problem with pip.
80 full command: /vol0004/apps/oss/spack-v0.19/opt/spack/linux-rhel8-
a64fx/fj-4.8.1/python-3.10.8-7q66snjvhvy7im57hncbgpirmddrb5sk/bin/py
thon3.10 /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/s
pack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/py-pip-23.1.2-e5mqkkojghz
4zpl6zboxzql3mko55ccd/lib/python3.10/site-packages/pip/_vendor/pypro
ject_hooks/_in_process/_in_process.py prepare_metadata_for_build_whe
el /data/rccs-sdt/a01008/tmpdir/tmpgo2xpwjd
81 cwd: /vol0003/rccs-sdt/data/a01008/tmpdir/spack-stage/spack-stage-
py-numpy-1.26.1-lfjg3fewnwt3u4cqwndtt7mluq3bz7yw/spack-src
82 Preparing metadata (pyproject.toml): finished with status 'error'
>> 83 error: metadata-generation-failed
84
85 × Encountered error while generating package metadata.
86 ╰─> See above for output.
87
88 note: This is an issue with the package mentioned above, not pip.
89 hint: See above for details.

See build log for details:
/data/rccs-sdt/a01008/tmpdir/spack-stage/spack-stage-py-numpy-1.26.1-lfjg3fewnwt3u4cqwndtt7mluq3bz7yw/spack-build-out.txt

==> Warning: Skipping build of py-mdanalysis-2.6.1-d2nah4qyem2doglbhr2jenknxs7heimj since py-numpy-1.26.1-lfjg3fewnwt3u4cqwndtt7mluq3bz7yw failed
==> Warning: Skipping build of candle-benchmarks-0.1-ilyu6rtqwqp4i5onekub7dvah3f4rb73 since py-mdanalysis-2.6.1-d2nah4qyem2doglbhr2jenknxs7heimj failed
==> Warning: Skipping build of py-pythran-0.12.2-4dxkluj7hm6kjsvyhmferjyducxgz5mo since py-numpy-1.26.1-lfjg3fewnwt3u4cqwndtt7mluq3bz7yw failed
==> Warning: Skipping build of py-scipy-1.11.3-f3xhggschvlmztu6eb52gv2x7sc6pqaj since py-pythran-0.12.2-4dxkluj7hm6kjsvyhmferjyducxgz5mo failed
==> Warning: Skipping build of py-griddataformats-1.0.1-g65cj6b5hagwedlbg4jfbe2axlsqw6f3 since py-scipy-1.11.3-f3xhggschvlmztu6eb52gv2x7sc6pqaj failed
==> Warning: Skipping build of py-keras-2.4.3-zx7xciieoaypjutoozykt42tjrq6mjin since py-scipy-1.11.3-f3xhggschvlmztu6eb52gv2x7sc6pqaj failed
==> Warning: Skipping build of py-theano-1.0.5-huikhnxhdmokfgsiuaee7q47vqjzcgoq since py-scipy-1.11.3-f3xhggschvlmztu6eb52gv2x7sc6pqaj failed
==> Warning: Skipping build of py-scikit-learn-1.3.2-i33kdpnnaiy43fqeb445cqmkcvuegjej since py-scipy-1.11.3-f3xhggschvlmztu6eb52gv2x7sc6pqaj failed
==> Warning: Skipping build of py-seaborn-0.11.2-kifddjoxbl4o6uh2kaluehmu6gkm4azd since py-scipy-1.11.3-f3xhggschvlmztu6eb52gv2x7sc6pqaj failed
==> Warning: Skipping build of py-mrcfile-1.3.0-4jzgymfflqaymvscvwxmqvwpqzbfwt4m since py-numpy-1.26.1-lfjg3fewnwt3u4cqwndtt7mluq3bz7yw failed
==> Warning: Skipping build of py-tidynamics-1.1.2-buy22525rw45jhvjxmy4dimisk4r7nab since py-numpy-1.26.1-lfjg3fewnwt3u4cqwndtt7mluq3bz7yw failed
==> Warning: Skipping build of py-numexpr-2.8.4-crtnbjyjucdyh4hottaagjcykbcssfha since py-numpy-1.26.1-lfjg3fewnwt3u4cqwndtt7mluq3bz7yw failed
==> Warning: Skipping build of py-pandas-1.5.3-ktebclieg6ttamachbavm22wrxiqzijw since py-numexpr-2.8.4-crtnbjyjucdyh4hottaagjcykbcssfha failed
==> Warning: Skipping build of py-pygpu-0.7.6-czujzvi75n3b53ejbe3k4s736p6s3dni since py-numpy-1.26.1-lfjg3fewnwt3u4cqwndtt7mluq3bz7yw failed
==> Warning: Skipping build of py-bottleneck-1.3.7-lsiwlfri5p3ak2fli6cew25t5lovm2af since py-numpy-1.26.1-lfjg3fewnwt3u4cqwndtt7mluq3bz7yw failed
==> Warning: Skipping build of py-matplotlib-2.2.3-5nwdj6em7lf2ogfmlubpur5pgmyaqbua since py-numpy-1.26.1-lfjg3fewnwt3u4cqwndtt7mluq3bz7yw failed
==> Warning: Skipping build of py-h5py-3.8.0-ce4gokv3rvu2vnhhap4rfyyryqrsrirt since py-numpy-1.26.1-lfjg3fewnwt3u4cqwndtt7mluq3bz7yw failed
==> Warning: Skipping build of py-biopython-1.81-qwene6tpeg5oygs7od2bjrt6m5aq6hgv since py-numpy-1.26.1-lfjg3fewnwt3u4cqwndtt7mluq3bz7yw failed
==> Installing py-pyyaml-6.0-sxhaerazzd7onnopthhr4rivuhs6m6tk [86/115]
==> No binary for py-pyyaml-6.0-sxhaerazzd7onnopthhr4rivuhs6m6tk found: installing from source
==> Fetching https://spack-llnl-mirror.s3-us-west-2.amazonaws.com/_source-cache/archive/68/68fb519c14306fec9720a2a5b45bc9f0c8d1b9c72adf45c37baedfcd949c35a2.tar.gz
==> No patches needed for py-pyyaml
==> py-pyyaml: Executing phase: 'install'
==> py-pyyaml: Successfully installed py-pyyaml-6.0-sxhaerazzd7onnopthhr4rivuhs6m6tk
Stage: 20.80s. Install: 46.46s. Post-install: 2.17s. Total: 1m 10.61s
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/py-pyyaml-6.0-sxhaerazzd7onnopthhr4rivuhs6m6tk
==> Installing py-beniget-0.4.1-fjgnbw4hrnegpb72v7j2i7ypj53mtqn6 [87/115]
==> No binary for py-beniget-0.4.1-fjgnbw4hrnegpb72v7j2i7ypj53mtqn6 found: installing from source
==> Fetching https://spack-llnl-mirror.s3-us-west-2.amazonaws.com/_source-cache/archive/75/75554b3b8ad0553ce2f607627dad3d95c60c441189875b98e097528f8e23ac0c.tar.gz
==> No patches needed for py-beniget
==> py-beniget: Executing phase: 'install'
==> py-beniget: Successfully installed py-beniget-0.4.1-fjgnbw4hrnegpb72v7j2i7ypj53mtqn6
Stage: 1.95s. Install: 12.96s. Post-install: 0.92s. Total: 17.09s
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/py-beniget-0.4.1-fjgnbw4hrnegpb72v7j2i7ypj53mtqn6
==> Installing py-meson-python-0.13.1-ssaeqvinwtoagmdqkgtdy4pvhgrzm3jf [88/115]
==> No binary for py-meson-python-0.13.1-ssaeqvinwtoagmdqkgtdy4pvhgrzm3jf found: installing from source
==> Fetching https://spack-llnl-mirror.s3-us-west-2.amazonaws.com/_source-cache/archive/63/63b3170001425c42fa4cfedadb9051cbd28925ff8eed7c40d36ba0099e3c7618.tar.gz
==> No patches needed for py-meson-python
==> py-meson-python: Executing phase: 'install'
==> py-meson-python: Successfully installed py-meson-python-0.13.1-ssaeqvinwtoagmdqkgtdy4pvhgrzm3jf
Stage: 6.30s. Install: 17.85s. Post-install: 1.41s. Total: 27.81s
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/py-meson-python-0.13.1-ssaeqvinwtoagmdqkgtdy4pvhgrzm3jf
==> Installing py-pydot-1.4.2-utiielgsobor2gmljvnxljsjndqodvuu [89/115]
==> No binary for py-pydot-1.4.2-utiielgsobor2gmljvnxljsjndqodvuu found: installing from source
==> Fetching https://spack-llnl-mirror.s3-us-west-2.amazonaws.com/_source-cache/archive/24/248081a39bcb56784deb018977e428605c1c758f10897a339fce1dd728ff007d.tar.gz
==> No patches needed for py-pydot
==> py-pydot: Executing phase: 'install'
==> py-pydot: Successfully installed py-pydot-1.4.2-utiielgsobor2gmljvnxljsjndqodvuu
Stage: 7.70s. Install: 7.84s. Post-install: 1.74s. Total: 19.72s
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/py-pydot-1.4.2-utiielgsobor2gmljvnxljsjndqodvuu
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/git-2.42.0-dwkradysco77qa5hmcp5ciqvhb3sfcuu
==> Installing py-requests-2.31.0-nicptzwoelvgzrkapl4moyg4f4ev5hfb [91/115]
==> No binary for py-requests-2.31.0-nicptzwoelvgzrkapl4moyg4f4ev5hfb found: installing from source
==> Fetching https://spack-llnl-mirror.s3-us-west-2.amazonaws.com/_source-cache/archive/94/942c5a758f98d790eaed1a29cb6eefc7ffb0d1cf7af05c3d2791656dbd6ad1e1.tar.gz
==> No patches needed for py-requests
==> py-requests: Executing phase: 'install'
==> py-requests: Successfully installed py-requests-2.31.0-nicptzwoelvgzrkapl4moyg4f4ev5hfb
Stage: 2.67s. Install: 17.31s. Post-install: 2.34s. Total: 26.77s
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/py-requests-2.31.0-nicptzwoelvgzrkapl4moyg4f4ev5hfb
==> Installing py-mmtf-python-1.1.2-deey5fiynkb6diwjpkxenfg3swli2art [92/115]
==> No binary for py-mmtf-python-1.1.2-deey5fiynkb6diwjpkxenfg3swli2art found: installing from source
==> Fetching https://spack-llnl-mirror.s3-us-west-2.amazonaws.com/_source-cache/archive/a5/a5caa7fcd2c1eaa16638b5b1da2d3276cbd3ed3513f0c2322957912003b6a8df.tar.gz
==> No patches needed for py-mmtf-python
==> py-mmtf-python: Executing phase: 'install'
==> py-mmtf-python: Successfully installed py-mmtf-python-1.1.2-deey5fiynkb6diwjpkxenfg3swli2art
Stage: 2.52s. Install: 16.88s. Post-install: 1.49s. Total: 22.00s
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/py-mmtf-python-1.1.2-deey5fiynkb6diwjpkxenfg3swli2art
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/py-setuptools-scm-7.1.0-nkc2xtoife4i3z45cwahqlnfcxxq3ffy
==> Installing py-tqdm-4.66.1-mtd5o42d4h7wds2mcif4bijxqznk57io [94/115]
==> No binary for py-tqdm-4.66.1-mtd5o42d4h7wds2mcif4bijxqznk57io found: installing from source
==> Fetching https://spack-llnl-mirror.s3-us-west-2.amazonaws.com/_source-cache/archive/d8/d88e651f9db8d8551a62556d3cff9e3034274ca5d66e93197cf2490e2dcb69c7.tar.gz
==> No patches needed for py-tqdm
==> py-tqdm: Executing phase: 'install'
==> py-tqdm: Successfully installed py-tqdm-4.66.1-mtd5o42d4h7wds2mcif4bijxqznk57io
Stage: 4.01s. Install: 17.40s. Post-install: 2.32s. Total: 27.10s
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/py-tqdm-4.66.1-mtd5o42d4h7wds2mcif4bijxqznk57io
==> Installing py-cppy-1.2.1-porqdw3o4isiktj5ihcuhnnvdivj5kw3 [95/115]
==> No binary for py-cppy-1.2.1-porqdw3o4isiktj5ihcuhnnvdivj5kw3 found: installing from source
==> Fetching https://spack-llnl-mirror.s3-us-west-2.amazonaws.com/_source-cache/archive/83/83b43bf17b1085ac15c5debdb42154f138b928234b21447358981f69d0d6fe1b.tar.gz
==> No patches needed for py-cppy
==> py-cppy: Executing phase: 'install'
==> py-cppy: Successfully installed py-cppy-1.2.1-porqdw3o4isiktj5ihcuhnnvdivj5kw3
Stage: 2.38s. Install: 15.04s. Post-install: 1.61s. Total: 22.19s
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/py-cppy-1.2.1-porqdw3o4isiktj5ihcuhnnvdivj5kw3
==> Installing py-python-dateutil-2.8.2-aj4jw5b3skcdcl37umot4ovqikyfjwjq [96/115]
==> No binary for py-python-dateutil-2.8.2-aj4jw5b3skcdcl37umot4ovqikyfjwjq found: installing from source
==> Using cached archive: /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/var/spack/cache/_source-cache/archive/01/0123cacc1627ae19ddf3c27a5de5bd67ee4586fbdd6440d9748f8abb483d3e86.tar.gz
==> No patches needed for py-python-dateutil
==> py-python-dateutil: Executing phase: 'install'
==> py-python-dateutil: Successfully installed py-python-dateutil-2.8.2-aj4jw5b3skcdcl37umot4ovqikyfjwjq
Stage: 2.66s. Install: 12.85s. Post-install: 2.03s. Total: 20.51s
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/py-python-dateutil-2.8.2-aj4jw5b3skcdcl37umot4ovqikyfjwjq
==> Installing py-kiwisolver-1.4.5-alf7dg76w6xizccrqddoxatrfua5hbyw [97/115]
==> No binary for py-kiwisolver-1.4.5-alf7dg76w6xizccrqddoxatrfua5hbyw found: installing from source
==> Fetching https://spack-llnl-mirror.s3-us-west-2.amazonaws.com/_source-cache/archive/e5/e57e563a57fb22a142da34f38acc2fc1a5c864bc29ca1517a88abc963e60d6ec.tar.gz
==> No patches needed for py-kiwisolver
==> py-kiwisolver: Executing phase: 'install'
==> py-kiwisolver: Successfully installed py-kiwisolver-1.4.5-alf7dg76w6xizccrqddoxatrfua5hbyw
Stage: 4.12s. Install: 1m 7.61s. Post-install: 1.72s. Total: 1m 16.88s
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/py-kiwisolver-1.4.5-alf7dg76w6xizccrqddoxatrfua5hbyw
==> Error: candle-benchmarks-0.1-ilyu6rtqwqp4i5onekub7dvah3f4rb73: Package was not installed
==> Error: Installation request failed. Refer to reported errors for failing package(s).


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